Jonathan G. Lees

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 14

Top Topics

Genome Sequences

Protein Function

Gene Prediction

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Ian Sillitoe, Nicola Bordin, Natalie L. Dawson, Vaishali P. Waman, Paul Ashford, Harry M. Scholes, Camilla S. M. Pang, Laurel Woodridge, Clemens Rauer, Neeladri Sen, Mahnaz Abbasian, Sean Le Cornu, Su Datt Lam, Karel Berka, Ivana Hutarová Vareková, Radka Svobodová Vareková, Jonathan G. Lees, Christine A. Orengo
CATH: increased structural coverage of functional space. Nucleic Acids Res. 49 (Database-Issue) (2021)
Su Datt Lam, M. Madan Babu, Jonathan G. Lees, Christine A. Orengo
Biological impact of mutually exclusive exon switching. PLoS Comput. Biol. 17 (3) (2021)
Ian Sillitoe, Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, Paul Ashford, Adeyelu Tolulope, Harry M. Scholes, Ilya Senatorov, Andra Bujan, Fatima Ceballos Rodriguez-Conde, Benjamin Dowling, Janet M. Thornton, Christine A. Orengo
CATH: expanding the horizons of structure-based functional annotations for genome sequences. Nucleic Acids Res. 47 (Database-Issue) (2019)
Tony E. Lewis, Ian Sillitoe, Jonathan G. Lees
cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly. Bioinform. 35 (10) (2019)
Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees
Gene3D: Extensive prediction of globular domains in proteins. Nucleic Acids Res. 46 (Database-Issue) (2018)
Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees
Gene3D: Extensive prediction of globular domains in proteins. Nucleic Acids Res. 46 (Database-Issue) (2018)
Cen Wan, Jonathan G. Lees, Federico Minneci, Christine A. Orengo, David T. Jones
Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster. PLoS Comput. Biol. 13 (10) (2017)
Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, David A. Lee, Paul Ashford, Christine A. Orengo, Ian Sillitoe
CATH: an expanded resource to predict protein function through structure and sequence. Nucleic Acids Res. 45 (Database-Issue) (2017)
Su Datt Lam, Natalie L. Dawson, Sayoni Das, Ian Sillitoe, Paul Ashford, David A. Lee, Sonja Lehtinen, Christine A. Orengo, Jonathan G. Lees
Gene3D: expanding the utility of domain assignments. Nucleic Acids Res. 44 (Database-Issue) (2016)
Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinform. 32 (18) (2016)
Sayoni Das, Ian Sillitoe, David A. Lee, Jonathan G. Lees, Natalie L. Dawson, John Ward, Christine A. Orengo
CATH FunFHMMer web server: protein functional annotations using functional family assignments. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo
CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res. 43 (Database-Issue) (2015)
Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinform. 31 (21) (2015)
Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo
FUN-L: gene prioritization for RNAi screens. Bioinform. 31 (12) (2015)
Jonathan G. Lees, David A. Lee, Romain A. Studer, Natalie L. Dawson, Ian Sillitoe, Sayoni Das, Corin Yeats, Benoit H. Dessailly, Robert Rentzsch, Christine A. Orengo
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis. Nucleic Acids Res. 42 (Database-Issue) (2014)
Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson, Nicholas Furnham, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer, Robert Rentzsch, Corin Yeats, Janet M. Thornton, Christine A. Orengo
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic Acids Res. 41 (Database-Issue) (2013)
Jonathan G. Lees, Corin Yeats, James Richard Perkins, Ian Sillitoe, Robert Rentzsch, Benoit H. Dessailly, Christine A. Orengo
Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis. Nucleic Acids Res. 40 (Database-Issue) (2012)
Corin Yeats, Jonathan G. Lees, Phil Carter, Ian Sillitoe, Christine A. Orengo
The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Jonathan G. Lees, Corin Yeats, Oliver Redfern, Andrew B. Clegg, Christine A. Orengo
Gene3D: merging structure and function for a Thousand genomes. Nucleic Acids Res. 38 (Database-Issue) (2010)
Juan A. G. Ranea, Ian Morilla, Jonathan G. Lees, Adam James Reid, Corin Yeats, Andrew B. Clegg, Francisca Sánchez-Jiménez, Christine A. Orengo
Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling. PLoS Comput. Biol. 6 (9) (2010)
Jonathan G. Lees, Robert W. Janes
Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations. BMC Bioinform. 9 (2008)
Corin Yeats, Jonathan G. Lees, Adam James Reid, Paul Kellam, Nigel J. Martin, Xinhui Liu, Christine A. Orengo
Gene3D: comprehensive structural and functional annotation of genomes. Nucleic Acids Res. 36 (Database-Issue) (2008)
Jonathan G. Lees, Andrew J. Miles, Frank Wien, B. A. Wallace
A reference database for circular dichroism spectroscopy covering fold and secondary structure space. Bioinform. 22 (16) (2006)
Jonathan G. Lees, Andrew J. Miles, Robert W. Janes, B. A. Wallace
Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data. BMC Bioinform. 7 (2006)