Jan Ellenberg

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 4

Top Topics

Biologically Meaningful

High Throughput

Computational Framework

Fluorescence Microscopy

Top Venues

J. Biomed. Semant.

PLoS Comput. Biol.

Publications

Maria Theiss, Jean-Karim Hériché, Craig Russell, David Helekal, Alisdair Soppitt, Jonas Ries, Jan Ellenberg, Alvis Brazma, Virginie Uhlmann
Simulating structurally variable nuclear pore complexes for microscopy. Bioinform. 39 (10) (2023)
Yin Cai, M. Julius Hossain, Jean-Karim Hériché, Antonio Z. Politi, Nike Walther, Birgit Koch, Malte Wachsmuth, Bianca Nijmeijer, Moritz Kueblbeck, Marina Martinic-Kavur, Rene Ladurner, Stephanie Alexander, Jan-Michael Peters, Jan Ellenberg
Experimental and computational framework for a dynamic protein atlas of human cell division. Nat. 561 (7723) (2018)
Carl Barton, Sandro Morganella, Øyvind Ødegård-Fougner, Stephanie Alexander, Jonas Ries, Tomas W. Fitzgerald, Jan Ellenberg, Ewan Birney
ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy. PLoS Comput. Biol. 14 (3) (2018)
Simon Jupp, James Malone, Tony Burdett, Jean-Karim Hériché, Eleanor Williams, Jan Ellenberg, Helen E. Parkinson, Gabriella Rustici
The cellular microscopy phenotype ontology. J. Biomed. Semant. 7 (2016)
Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo
FUN-L: gene prioritization for RNAi screens. Bioinform. 31 (12) (2015)
Grégoire Pau, Thomas Walter, Beate Neumann, Jean-Karim Hériché, Jan Ellenberg, Wolfgang Huber
Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay. BMC Bioinform. 14 (2013)
Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Annelie Wünsche, Jan Ellenberg, Roland Eils, Karl Rohr
Automatic Analysis of Live Cell Image Sequences to determine Temporal Mitotic Phenotypes. Bildverarbeitung für die Medizin (2010)
Thomas Walter, Michael Held, Beate Neumann, Jean-Karim Hériché, Christian Conrad, Rainer Pepperkok, Jan Ellenberg
A genome wide RNAI screen by time lapse microscopy in order to identify mitotic genes - computational aspects and challenges. ISBI (2008)
Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr
Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. ISBI (2007)
Il-Han Kim, William J. Godinez, Nathalie Harder, Felipe Mora-Bermúdez, Jan Ellenberg, Roland Eils, Karl Rohr
Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences. Medical Imaging: Image Processing (2007)
Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr
Determination of Mitotic Delays in 3D Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. Bildverarbeitung für die Medizin (2007)
Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr
Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells. Bildverarbeitung für die Medizin (2006)
Vassili Kovalev, Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr
Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens. CVPR (1) (2006)
Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Phil Rogers, Rainer Pepperkok, Jan Ellenberg
Time-lapse microscopy-based genome wide RNAi screening in live human cells. ISBI (2006)
Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr
Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences. MICCAI (1) (2006)
Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr
Automated recognition of mitotic patterns in fluorescence microscopy images of human cells. ISBI (2006)
Julian Mattes, Johannes Fieres, Joël Beaudouin, Daniel Gerlich, Jan Ellenberg, Roland Eils
New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis. MICCAI (2001)