Wolfgang Huber

Publication Activity (10 Years)

Years Active: 1991-2023
Publications (10 Years): 8

Top Topics

Quality Metrics

Mass Spectrometry

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Sudeep Sahadevan, Thileepan Sekaran, Nadia Ashaf, Marko Fritz, Matthias W. Hentze, Wolfgang Huber, Thomas Schwarzl
htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets. Bioinform. 39 (1) (2023)
Thomas Naake, Johannes Rainer, Wolfgang Huber
MsQuality: an interoperable open-source package for the calculation of standardized quality metrics of mass spectrometry data. Bioinform. 39 (10) (2023)
Alina Batzilla, Junyan Lu, Jarno Kivioja, Kerstin Putzker, Joe Lewis, Thorsten Zenz, Wolfgang Huber
Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling. PLoS Comput. Biol. 18 (8) (2022)
Thomas Naake, Wolfgang Huber
MatrixQCvis: shiny-based interactive data quality exploration for omics data. Bioinform. 38 (4) (2022)
Constantin Ahlmann-Eltze, Wolfgang Huber
glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data. Bioinform. 36 (24) (2021)
Irene Papatheodorou, Nuno A. Fonseca, Maria Keays, Y. Amy Tang, Elisabet Barrera, Wojciech Bazant, Melissa L. Burke, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta, Satu Koskinen, Suhaib Mohammed, Matthew J. Geniza, Justin Preece, Pankaj Jaiswal, Andrew F. Jarnuczak, Wolfgang Huber, Oliver Stegle, Juan Antonio Vizcaíno, Alvis Brazma, Robert Petryszak
Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Res. 46 (Database-Issue) (2018)
Mike L. Smith, Andrzej K. Oles, Wolfgang Huber
Authoring Bioconductor workflows with BiocWorkflowTools. F1000Research 7 (2018)
Robert Petryszak, Maria Keays, Y. Amy Tang, Nuno A. Fonseca, Elisabet Barrera, Tony Burdett, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Simon Jupp, Satu Koskinen, Oliver Mannion, Laura Huerta, Karine Megy, Catherine Snow, Eleanor Williams, Mitra Barzine, Emma Hastings, Hendrik Weisser, James C. Wright, Pankaj Jaiswal, Wolfgang Huber, Jyoti Choudhary, Helen E. Parkinson, Alvis Brazma
Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Res. 44 (Database-Issue) (2016)
Felix A. Klein, Tibor Pakozdi, Simon Anders, Yad Ghavi-Helm, Eileen E. M. Furlong, Wolfgang Huber
FourCSeq: analysis of 4C sequencing data. Bioinform. 31 (19) (2015)
Simon Anders, Paul Theodor Pyl, Wolfgang Huber
HTSeq - a Python framework to work with high-throughput sequencing data. Bioinform. 31 (2) (2015)
Julian Gehring, Bernd Fischer, Michael F. Lawrence, Wolfgang Huber
SomaticSignatures: inferring mutational signatures from single-nucleotide variants. Bioinform. 31 (22) (2015)
Paul Theodor Pyl, Julian Gehring, Bernd Fischer, Wolfgang Huber
h5vc: scalable nucleotide tallies with HDF5. Bioinform. 30 (10) (2014)
Robert Petryszak, Tony Burdett, Benedetto Fiorelli, Nuno A. Fonseca, Mar Gonzalez-Porta, Emma Hastings, Wolfgang Huber, Simon Jupp, Maria Keays, Nataliya Kryvych, Julie A. McMurry, John C. Marioni, James Malone, Karine Megy, Gabriella Rustici, Y. Amy Tang, Jan Taubert, Eleanor Williams, Oliver Mannion, Helen E. Parkinson, Alvis Brazma
Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. Nucleic Acids Res. 42 (Database-Issue) (2014)
Christoph Sommer, Michael Held, Bernd Fischer, Wolfgang Huber, Daniel Gerlich
CellH5: a format for data exchange in high-content screening. Bioinform. 29 (12) (2013)
Danni Yu, Wolfgang Huber, Olga Vitek
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size. Bioinform. 29 (10) (2013)
Grégoire Pau, Thomas Walter, Beate Neumann, Jean-Karim Hériché, Jan Ellenberg, Wolfgang Huber
Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay. BMC Bioinform. 14 (2013)
Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey
Software for Computing and Annotating Genomic Ranges. PLoS Comput. Biol. 9 (8) (2013)
Matthew N. McCall, Peter N. Murakami, Margus Lukk, Wolfgang Huber, Rafael A. Irizarry
Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples. BMC Bioinform. 12 (2011)
Elin Axelsson, Thomas Sandmann, Thomas Horn, Michael Boutros, Wolfgang Huber, Bernd Fischer
Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi. BMC Bioinform. 12 (2011)
Grégoire Pau, Florian Fuchs, Oleg Sklyar, Michael Boutros, Wolfgang Huber
EBImage - an R package for image processing with applications to cellular phenotypes. Bioinform. 26 (7) (2010)
Audrey Kauffmann, Robert Gentleman, Wolfgang Huber
arrayQualityMetrics - a bioconductor package for quality assessment of microarray data. Bioinform. 25 (3) (2009)
Richard Bourgon, Eugenio Mancera, Alessandro Brozzi, Lars M. Steinmetz, Wolfgang Huber
using semi-supervised clustering. Bioinform. 25 (8) (2009)
Grégoire Pau, Wolfgang Huber
The hwriter package: Composing HTML documents with R objects. R J. 1 (1) (2009)
Audrey Kauffmann, Tim F. Rayner, Helen E. Parkinson, Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber
Importing ArrayExpress datasets into R/Bioconductor. Bioinform. 25 (16) (2009)
Joern Toedling, Wolfgang Huber
Analyzing ChIP-chip Data Using Bioconductor. PLoS Comput. Biol. 4 (11) (2008)
Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman
Estimating node degree in bait-prey graphs. Bioinform. 24 (2) (2008)
Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. Bioinform. 24 (8) (2008)
Charles Girardot, Oleg Sklyar, Sophie Grosz, Wolfgang Huber, Eileen E. M. Furlong
CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data. Bioinform. 23 (6) (2007)
Joern Toedling, Oleg Sklyar, Wolfgang Huber
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts. BMC Bioinform. 8 (2007)
Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny J. Fischer, Silke Sperling, Wolfgang Huber
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts. BMC Bioinform. 8 (2007)
Tineke Casneuf, Yves Van de Peer, Wolfgang Huber
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation. BMC Bioinform. 8 (2007)
Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman
Graphs in molecular biology. BMC Bioinform. 8 (S-6) (2007)
Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy Simpson, Oliver Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer Pepperkok, Annemarie Poustka, Stefan Wiemann
The LIFEdb database in 2006. Nucleic Acids Res. 34 (Database-Issue) (2006)
Wolfgang Huber, Joern Toedling, Lars M. Steinmetz
Transcript mapping with high-density oligonucleotide tiling arrays. Bioinform. 22 (16) (2006)
Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean R. Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinform. 21 (16) (2005)
Andreas Buness, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka
arrayMagic: two-colour cDNA microarray quality control, preprocessing. Bioinform. 21 (4) (2005)
Martin Jankela, Wolfgang Puffitsch, Wolfgang Huber
Towards a Rapid Prototyping Framework for Architecture Exploration in Embedded Systems. WISES (2004)
Ulrich Mansmann, Markus Ruschhaupt, Wolfgang Huber
Reproducible Statistical Analysis in Microarray Profiling Studies. PARA (2004)
Karl Hendling, Thomas Losert, Wolfgang Huber, Martin Jandl
Interference minimizing bandwidth guaranteed on-line routing algorithm for traffic engineering. ICON (2004)
Wolfgang Huber, Robert Gentleman
matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements. Bioinform. 20 (10) (2004)
Martin Delvai, Wolfgang Huber, Peter P. Puschner, Andreas Steininger
Processor Support for Temporal Predictability - The SPEAR Design Example. ECRTS (2003)
Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron
Variance Stabilization and Robust Normalization for Microarray Gene Expression Data. COMPSTAT (2002)
Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron
Variance stabilization applied to microarray data calibration and to the quantification of differential expression. ISMB (2002)
Michael Pitman, Wolfgang Huber, Hans W. Horn, Andreas Krämer, Julia E. Rice, William C. Swope
FLASHFLOOD: A 3D Field-based similarity search and alignment method for flexible molecules. J. Comput. Aided Mol. Des. 15 (7) (2001)
Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron
Identifying splits with clear separation: a new class discovery method for gene expression data. ISMB (Supplement of Bioinformatics) (2001)
Burkhart Fischer, Stefan Gezeck, Wolfgang Huber
The three-loop model: a neural network for the generation of saccadic reaction times. Biol. Cybern. 72 (3) (1995)
Wolfgang Huber
Die EG-Politik im Bereich des Informationsmarktes. ISI (1991)