Martin Vingron

ORCID

Publication Activity (10 Years)

Years Active: 1989-2023
Publications (10 Years): 24

Top Venues

Publications

Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2023 Outstanding Contributions to ISCB Award: Shoba Ranganathan. Bioinform. 39 (Supplement-1) (2023)
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2023 ISCB innovator award: Dana Pe'er. Bioinform. 39 (Supplement-1) (2023)
Trisevgeni Rapakoulia, Sara Lopez Ruiz De Vargas, Persia Akbari Omgba, Verena Laupert, Igor Ulitsky, Martin Vingron
CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction. Bioinform. 39 (11) (2023)
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2023 ISCB Overton Prize: Jingyi Jessica Li. Bioinform. 39 (Supplement-1) (2023)
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
2023 ISCB accomplishments by a senior scientist award: Mark Gerstein. Bioinform. 39 (Supplement-1) (2023)
Sorin Istrail, Pavel A. Pevzner, Fengzhu Sun, Martin Vingron
Special Issue: Professor Michael Waterman's 80th Birthday, Part 1. J. Comput. Biol. 29 (7) (2022)
Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail
Michael Waterman's Contributions to Computational Biology and Bioinformatics. J. Comput. Biol. 29 (7) (2022)
Lam-Ha Ly, Martin Vingron
Effect of imputation on gene network reconstruction from single-cell RNA-seq data. Patterns 3 (2) (2022)
Christiana N. Fogg, Diane E. Kovats, Martin Vingron
ISCB Honors 2021 Award Recipients Peer Bork, Barbara Engelhardt, Ben Raphael, Teresa Attwood. Bioinform. 37 (Supplement) (2021)
David Heller, Martin Vingron
SVIM-asm: structural variant detection from haploid and diploid genome assemblies. Bioinform. 36 (22-23) (2021)
Philipp Benner, Martin Vingron
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. J. Comput. Biol. 27 (4) (2020)
M-Hossein Moeinzadeh, Jun Yang, Evgeny Muzychenko, Giuseppe Gallone, David Heller, Knut Reinert, Stefan A. Haas, Martin Vingron
Ranbow: A fast and accurate method for polyploid haplotype reconstruction. PLoS Comput. Biol. 16 (5) (2020)
Tobias Zehnder, Philipp Benner, Martin Vingron
Predicting enhancers in mammalian genomes using supervised hidden Markov models. BMC Bioinform. 20 (1) (2019)
Wolfgang Kopp, Martin Vingron
DNA Motif Match Statistics Without Poisson Approximation. J. Comput. Biol. 26 (8) (2019)
Philipp Benner, Martin Vingron
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. RECOMB (2019)
David Heller, Martin Vingron
SVIM: structural variant identification using mapped long reads. Bioinform. 35 (17) (2019)
Mahsa Ghanbari, Julia Lasserre, Martin Vingron
The Distance Precision Matrix: computing networks from non-linear relationships. Bioinform. 35 (6) (2019)
Alena van Bömmel, Michael I. Love, Ho-Ryun Chung, Martin Vingron
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. PLoS Comput. Biol. 14 (8) (2018)
Edgar Steiger, Martin Vingron
Sparse-Group Bayesian Feature Selection Using Expectation Propagation for Signal Recovery and Network Reconstruction. CoRR (2018)
Wolfgang Kopp, Martin Vingron
An improved compound Poisson model for the number of motif hits in DNA sequences. Bioinform. 33 (24) (2017)
Matthew R. Huska, Martin Vingron
Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns. PLoS Comput. Biol. 12 (12) (2016)
Sergiy Ancherbak, Ercan E. Kuruoglu, Martin Vingron
Time-Dependent Gene Network Modelling by Sequential Monte Carlo. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (6) (2016)
Matthias Heinig, Maria Colomé-Tatché, Aaron Taudt, Carola Rintisch, Sebastian Schafer, Michal Pravenec, Norbert Hübner, Martin Vingron, Frank Johannes
histoneHMM: Differential analysis of histone modifications with broad genomic footprints. BMC Bioinform. 16 (2015)
Mahsa Ghanbari, Julia Lasserre, Martin Vingron
Reconstruction of gene networks using prior knowledge. BMC Syst. Biol. 9 (2015)
Guofeng Meng, Martin Vingron
Condition-specific target prediction from motifs and expression. Bioinform. 30 (12) (2014)
Navodit Misra, Ewa Szczurek, Martin Vingron
Inferring the paths of somatic evolution in cancer. Bioinform. 30 (17) (2014)
Alessandro Mammana, Martin Vingron, Ho-Ryun Chung
Inferring nucleosome positions with their histone mark annotation from ChIP data. Bioinform. 29 (20) (2013)
Julia Lasserre, Ho-Ryun Chung, Martin Vingron
Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks. PLoS Comput. Biol. 9 (9) (2013)
Jonathan Göke, Marcel H. Schulz, Julia Lasserre, Martin Vingron
Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts. Bioinform. 28 (5) (2012)
Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron, Ewan Birney
RNA-seq assembly across the dynamic range of expression levels. Bioinform. 28 (8) (2012)
Alena Mysicková, Martin Vingron
Detection of interacting transcription factors in human tissues using predicted DNA binding affinity. BMC Genom. 13 (S-1) (2012)
Shengyu Ni, Martin Vingron
R2KS: A Novel Measure for Comparing Gene Expression Based on Ranked Gene Lists. J. Comput. Biol. 19 (6) (2012)
Julia Lasserre, Steffen Arnold, Martin Vingron, Petra Reinke, Carl Hinrichs
Predicting the outcome of renal transplantation. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Anne-Katrin Emde, Marcel H. Schulz, David Weese, Ruping Sun, Martin Vingron, Vera M. Kalscheuer, Stefan A. Haas, Knut Reinert
Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS. Bioinform. 28 (5) (2012)
Ruping Sun, Michael I. Love, Tomasz Zemojtel, Anne-Katrin Emde, Ho-Ryun Chung, Martin Vingron, Stefan A. Haas
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. Bioinform. 28 (7) (2012)
Akdes Serin, Martin Vingron
DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach. Algorithms Mol. Biol. 6 (2011)
Jonathan Göke, Marc Jung, Sarah Behrens, Lukas Chavez, Sean O'Keeffe, Bernd Timmermann, Hans Lehrach, James Adjaye, Martin Vingron
Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development. PLoS Comput. Biol. 7 (12) (2011)
Yuan Yuan, Yi-Ping Phoebe Chen, Shengyu Ni, Augix Guohua Xu, Lin Tang, Martin Vingron, Mehmet Somel, Philipp Khaitovich
Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series. BMC Bioinform. 12 (2011)
Martin Vingron
Computational Regulatory Genomics. CPM (2011)
Ewa Szczurek, Florian Markowetz, Irit Gat-Viks, Przemyslaw Biecek, Jerzy Tiuryn, Martin Vingron
Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data. BMC Bioinform. 12 (2011)
Szymon M. Kielbasa, Holger Klein, Helge G. Roider, Martin Vingron, Nils Blüthgen
TransFind - predicting transcriptional regulators for gene sets. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Ewa Szczurek, Przemyslaw Biecek, Jerzy Tiuryn, Martin Vingron
Introducing Knowledge into Differential Expression Analysis. J. Comput. Biol. 17 (8) (2010)
Guofeng Meng, Axel Mosig, Martin Vingron
A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes. BMC Bioinform. 11 (2010)
Sarah Behrens, Martin Vingron
Studying the Evolution of Promoter Sequences: A Waiting Time Problem. J. Comput. Biol. 17 (12) (2010)
Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas
PASTAA: identifying transcription factors associated with sets of co-regulated genes. Bioinform. 25 (4) (2009)
Ho-Ryun Chung, Martin Vingron
Comparison of sequence-dependent tiling array normalization approaches. BMC Bioinform. 10 (2009)
Utz J. Pape, Holger Klein, Martin Vingron
Statistical detection of cooperative transcription factors with similarity adjustment. Bioinform. 25 (16) (2009)
Irit Gat-Viks, Martin Vingron
Evidence for Gene-Specific Rather Than Transcription Rate-Dependent Histone H3 Exchange in Yeast Coding Regions. PLoS Comput. Biol. 5 (2) (2009)
Marcel H. Schulz, Sebastian Köhler, Sebastian Bauer, Martin Vingron, Peter N. Robinson
Exact Score Distribution Computation for Similarity Searches in Ontologies. WABI (2009)
Xiaoqiu Huang, Martin Vingron
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction. J. Comput. Biol. 16 (7) (2009)
Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron
Prioritization of gene regulatory interactions from large-scale modules in yeast. BMC Bioinform. 9 (2008)
Utz J. Pape, Holger Klein, Martin Vingron
Statistical Detection of Cooperative Transcription Factors with Similarity Adjustment. German Conference on Bioinformatics (2008)
Utz J. Pape, Sven Rahmann, Martin Vingron
Natural similarity measures between position frequency matrices with an application to clustering. Bioinform. 24 (3) (2008)
Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N. Robinson
Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration. Bioinform. 24 (14) (2008)
Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron
Fast and Adaptive Variable Order Markov Chain Construction. WABI (2008)
Utz J. Pape, Sven Rahmann, Fengzhu Sun, Martin Vingron
Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands. J. Comput. Biol. 15 (6) (2008)
Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron
The BREW workshop series: a stimulating experience in PhD education. Briefings Bioinform. 9 (3) (2008)
Thomas Manke, Helge G. Roider, Martin Vingron
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Comput. Biol. 4 (3) (2008)
Ho-Ryun Chung, Dennis Kostka, Martin Vingron
A physical model for tiling array analysis. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Peter F. Arndt, Martin Vingron
The Otto Warburg International Summer School and Workshop on Networks and Regulation. BMC Bioinform. 8 (S-6) (2007)
Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron
Predicting transcription factor affinities to DNA from a biophysical model. Bioinform. 23 (2) (2007)
Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron
Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis. Bioinform. 23 (22) (2007)
Abha Singh Bais, Steffen Grossmann, Martin Vingron
-regulatory regions. Bioinform. 23 (2) (2007)
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
Integer linear programming approaches for non-unique probe selection. Discret. Appl. Math. 155 (6-7) (2007)
Christoph Dieterich, M. W. Franz, Martin Vingron
Developments in CORG: a gene-centric comparative genomics resource. Nucleic Acids Res. 35 (Database-Issue) (2007)
Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics. J. Comput. Biol. 14 (5) (2007)
Behshad Behzadi, Martin Vingron
Reconstructing Domain Compositions of Ancestral Multi-domain Proteins. Comparative Genomics (2006)
Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt
Alignment Statistics for Long-Range Correlated Genomic Sequences. RECOMB (2006)
Behshad Behzadi, Martin Vingron
An Improved Algorithm for the Macro-evolutionary Phylogeny Problem. CPM (2006)
Hannes Luz, Martin Vingron
Family specific rates of protein evolution. Bioinform. 22 (10) (2006)
Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron
An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets. RECOMB (2006)
Chen-Hsiang Yeang, Martin Vingron
A joint model of regulatory and metabolic networks. BMC Bioinform. 7 (2006)
Christine Steinhoff, Martin Vingron
Normalization and quantification of differential expression in gene expression microarrays. Briefings Bioinform. 7 (2) (2006)
Shobhit Gupta, Martin Vingron, Stefan A. Haas
T-STAG: resource and web-interface for tissue-specific transcripts and genes. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Thomas Meinel, Antje Krause, Hannes Luz, Martin Vingron, Eike Staub
The SYSTERS Protein Family Database in 2005. Nucleic Acids Res. 33 (Database-Issue) (2005)
Hannes Luz, Martin Vingron
Familz specific rates of protein evolution. German Conference on Bioinformatics (2005)
Morris Michael, Christoph Dieterich, Martin Vingron
SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors. Bioinform. 21 (9) (2005)
Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron
05441 Abstracts Collection - Managing and Mining Genome Information: Frontiers in Bioinformatics. Managing and Mining Genome Information (2005)
Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron
05441 Executive Summary - Managing and Mining Genome Information: Frontiers in Bioinformatics. Managing and Mining Genome Information (2005)
Antje Krause, Jens Stoye, Martin Vingron
Large scale hierarchical clustering of protein sequences. BMC Bioinform. 6 (2005)
Stefan Roepcke, Steffen Grossmann, Sven Rahmann, Martin Vingron
T-Reg Comparator: an analysis tool for the comparison of position weight matrices. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Stefan Roepcke, Petko Fiziev, P. H. Seeburg, Martin Vingron
SVC: structured visualization of evolutionary sequence conservation. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler
IntAct: an open source molecular interaction database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Anja von Heydebreck, Silke Sperling, Bogac Kaynak, Hans Lehrach, Martin Vingron
Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays). it Inf. Technol. 46 (1) (2004)
Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinform. 20 (2) (2004)
Katja Rateitschak, Tobias Müller, Martin Vingron
Annotating significant pairs of transcription factor binding sites in regulatory DNA. Silico Biol. 4 (4) (2004)
Thomas Manke, Christoph Dieterich, Martin Vingron
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome. Regulatory Genomics (2004)
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Shobhit Gupta, Dorothea Zink, Bernhard Korn, Martin Vingron, Stefan A. Haas
Genome wide identification and classification of alternative splicing based on EST data. Bioinform. 20 (16) (2004)
Christoph Dieterich, Sven Rahmann, Martin Vingron
Functional inference from non-random distributions of conserved predicted transcription factor binding sites. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Christoph Dieterich, Haiyan Wang, Katja Rateitschak, Hannes Luz, Martin Vingron
CORG: a database for COmparative Regulatory Genomics. Nucleic Acids Res. 31 (1) (2003)
Benno Schwikowski, Martin Vingron
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discret. Appl. Math. 127 (1) (2003)
Christoph Dieterich, Ralf Herwig, Martin Vingron
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. ECCB (2003)
Christine Steinhoff, Tobias Müller, Ulrike A. Nuber, Martin Vingron
Gaussian Mixture Density Estimation Applied to Microarray Data. IDA (2003)
Thomas Meinel, Martin Vingron, Antje Krause
The SYSTERS protein family database: Taxon-related protein family size distributions and singleton frequencies. German Conference on Bioinformatics (2003)
Heiko A. Schmidt, Ekkehard Petzold, Martin Vingron, Arndt von Haeseler
Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. J. Parallel Distributed Comput. 63 (7-8) (2003)
Kurt Fellenberg, Nicole C. Hauser, Benedikt Brors, Jörg D. Hoheisel, Martin Vingron
Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis. Bioinform. 18 (3) (2002)
Dietmar Schomburg, Martin Vingron
Bioinformatics research and education in Germany. Silico Biol. 2 (3) (2002)
Pierre Nicodème, T. Doerks, Martin Vingron
Proteome analysis based on motif statistics. ECCB (2002)
Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron
Variance Stabilization and Robust Normalization for Microarray Gene Expression Data. COMPSTAT (2002)

Martin Vingron.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Martin Vingron