Thomas Manke

Publication Activity (10 Years)

Years Active: 2004-2021
Publications (10 Years): 7

Top Topics

Genotype Phenotype

Quality Control

Top Venues

Nucleic Acids Res.

Publications

Lucille Lopez-Delisle, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn A. Grüning, Fidel Ramírez, Thomas Manke
pyGenomeTracks: reproducible plots for multivariate genomic datasets. Bioinform. 37 (3) (2021)
Joachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn A. Grüning
Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon Patrick Ryan, Thomas Manke
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis. Bioinform. 35 (22) (2019)
Evgeny Anatskiy, Devon Patrick Ryan, Björn A. Grüning, Laura Arrigoni, Thomas Manke, Ulrike Bönisch
Parkour LIMS: high-quality sample preparation in next generation sequencing. Bioinform. 35 (8) (2019)
Joachim Wolff, Vivek Bhardwaj, Stephan Nothjunge, Gautier Richard, Gina Renschler, Ralf Gilsbach, Thomas Manke, Rolf Backofen, Fidel Ramírez, Björn A. Grüning
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Tugçe Aktas, Ibrahim Avsar Ilik, Daniel Maticzka, Vivek Bhardwaj, Cecilia Pessoa Rodrigues, Gerhard Mittler, Thomas Manke, Rolf Backofen, Asifa Akhtar
invasion of the human genome. Nat. 544 (7648) (2017)
Fidel Ramírez, Devon Patrick Ryan, Björn A. Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, Thomas Manke
deepTools2: a next generation web server for deep-sequencing data analysis. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A. Grüning, Thomas Manke
deepTools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Maxim Barenboim, Thomas Manke
ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation. Bioinform. 29 (17) (2013)
Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas
PASTAA: identifying transcription factors associated with sets of co-regulated genes. Bioinform. 25 (4) (2009)
Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron
Prioritization of gene regulatory interactions from large-scale modules in yeast. BMC Bioinform. 9 (2008)
Thomas Manke, Helge G. Roider, Martin Vingron
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Comput. Biol. 4 (3) (2008)
Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron
Predicting transcription factor affinities to DNA from a biophysical model. Bioinform. 23 (2) (2007)
Thomas Manke, Christoph Dieterich, Martin Vingron
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome. Regulatory Genomics (2004)