PASTAA: identifying transcription factors associated with sets of co-regulated genes.
Helge G. RoiderThomas MankeSean O'KeeffeMartin VingronStefan A. HaasPublished in: Bioinform. (2009)
Keyphrases
- gene expression
- transcription factors
- dna binding
- transcription factor binding sites
- differentially expressed
- differentially expressed genes
- microarray
- regulatory networks
- gene regulation
- microarray data
- binding sites
- gene regulatory
- biological processes
- regulatory elements
- saccharomyces cerevisiae
- gene expression data
- dna sequences
- gene regulatory networks
- cell cycle
- component analysis
- genomic data
- gene sets
- systems biology
- genome wide
- cis regulatory
- gene ontology
- computational biology
- biomedical literature
- gene expression profiles
- signaling pathways
- differential expression
- transcriptional regulation
- genome sequences
- biological networks
- sequence data
- gene selection
- high throughput
- co occurrence
- data sets
- microarray datasets
- microarray data analysis
- reverse engineering
- high dimensionality
- high dimensional