Steffen Heyne

Publication Activity (10 Years)

Years Active: 2008-2019
Publications (10 Years): 3

Top Topics

Secondary Structure

Pattern Matching

Top Venues

Nucleic Acids Res.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon Patrick Ryan, Thomas Manke
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis. Bioinform. 35 (22) (2019)
Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Fidel Ramírez, Devon Patrick Ryan, Björn A. Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, Thomas Manke
deepTools2: a next generation web server for deep-sequencing data analysis. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Fabrizio Costa, Steffen Heyne, Dominic Rose, Rolf Backofen
Scalable structural clustering of local RNA secondary structures. CMSR@ECCB (2014)
Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Otto, Sebastian Will
Local Exact Pattern Matching for Non-FixedRNA Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Christina Otto, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Rolf Backofen, Sebastian Will
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs. BMC Bioinform. 15 (2014)
Sebastian Will, Michael F. Siebauer, Steffen Heyne, Jan Engelhardt, Peter F. Stadler, Kristin Reiche, Rolf Backofen
LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search. Algorithms Mol. Biol. 8 (2013)
Christina Schmiedl, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Sebastian Will, Rolf Backofen
Exact Pattern Matching for RNA Structure Ensembles. RECOMB (2012)
Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Schmiedl, Sebastian Will
Local Exact Pattern Matching for Non-fixed RNA Structures. CPM (2012)
Steffen Heyne, Fabrizio Costa, Dominic Rose, Rolf Backofen
GraphClust: alignment-free structural clustering of local RNA secondary structures. Bioinform. 28 (12) (2012)
Nuno D. Mendes, Steffen Heyne, Ana T. Freitas, Marie-France Sagot, Rolf Backofen
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches. Bioinform. 28 (23) (2012)
Cameron Smith, Steffen Heyne, Andreas S. Richter, Sebastian Will, Rolf Backofen
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Steffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen
Lightweight comparison of RNAs based on exact sequence-structure matches. Bioinform. 25 (16) (2009)
Steffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen
Lightweight Comparison of RNAs based on Exact Sequence-structure Matches. German Conference on Bioinformatics (2008)