Florian Eggenhofer

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 7

Top Topics

Automatically Extracted

Rna Secondary Structure Prediction

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Rick Gelhausen, Teresa Müller, Sarah L. Svensson, Omer S. Alkhnbashi, Cynthia M. Sharma, Florian Eggenhofer, Rolf Backofen
RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria. Briefings Bioinform. 23 (2) (2022)
Michael Uhl, Dominik Rabsch, Florian Eggenhofer, Rolf Backofen
Peakhood: individual site context extraction for CLIP-seq peak regions. Bioinform. 38 (4) (2022)
Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen
CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning
The RNA workbench 2.0: next generation RNA data analysis. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Florian Eggenhofer, Ivo L. Hofacker, Rolf Backofen, Christian Höner zu Siederdissen
CMV: visualization for RNA and protein family models and their comparisons. Bioinform. 34 (15) (2018)
Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Florian Eggenhofer, Ivo L. Hofacker, Christian Höner zu Siederdissen
CMCompare webserver: comparing RNA families via covariance models. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker
RNApredator: fast accessibility-based prediction of sRNA targets. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker
Fast accessibility-based prediction of RNA-RNA interactions. Bioinform. 27 (14) (2011)