Christian Höner zu Siederdissen

Publication Activity (10 Years)

Years Active: 2006-2022
Publications (10 Years): 14

Top Topics

Coordinate Systems

Dynamic Programming

Grammatical Inference

Secondary Structure

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Dustyn Eggers, Christian Höner zu Siederdissen, Peter F. Stadler
Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. BSB (2022)
Sarah J. Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler
Compositional Properties of Alignments. Math. Comput. Sci. 15 (4) (2021)
Fabian Gärtner, Felix Kühnl, Carsten R. Seemann, Christian Höner zu Siederdissen, Peter F. Stadler
Superbubbles as an empirical characteristic of directed networks. Netw. Sci. 9 (1) (2021)
Fabian Gärtner, Felix Kühnl, Carsten R. Seemann, Christian Höner zu Siederdissen, Peter F. Stadler
Superbubbles as an Empirical Characteristic of Directed Networks. CoRR (2020)
Maria Beatriz Walter Costa, Christian Höner zu Siederdissen, Marko Dunjic, Peter F. Stadler, Katja Nowick
SSS-test: a novel test for detecting positive selection on RNA secondary structure. BMC Bioinform. 20 (1) (2019)
Joachim Ludwig, Christian Höner zu Siederdissen, Zishu Liu, Peter F. Stadler, Susann Müller
flowEMMi: an automated model-based clustering tool for microbial cytometric data. BMC Bioinform. 20 (1) (2019)
Fabian Gärtner, Christian Höner zu Siederdissen, Lydia Müller, Peter F. Stadler
Coordinate systems for supergenomes. Algorithms Mol. Biol. 13 (1) (2018)
Florian Eggenhofer, Ivo L. Hofacker, Rolf Backofen, Christian Höner zu Siederdissen
CMV: visualization for RNA and protein family models and their comparisons. Bioinform. 34 (15) (2018)
Sarah J. Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler
Alignments as Compositional Structures. CoRR (2018)
Marwa Al Arab, Matthias Bernt, Christian Höner zu Siederdissen, Kifah Tout, Peter F. Stadler
Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements. Algorithms Mol. Biol. 12 (1) (2017)
Sarah Berkemer, Christian Höner zu Siederdissen, Peter F. Stadler
Algebraic Dynamic Programming on Trees. Algorithms 10 (4) (2017)
Maik Riechert, Christian Höner zu Siederdissen, Peter F. Stadler
Algebraic dynamic programming for multiple context-free grammars. Theor. Comput. Sci. 639 (2016)
Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler
Algebraic Dynamic Programming over general data structures. BMC Bioinform. 16 (S19) (2015)
Christian Höner zu Siederdissen, Ivo L. Hofacker, Peter F. Stadler
Product Grammars for Alignment and Folding. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (3) (2015)
Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler
Dynamic Programming for Set Data Types. BSB (2014)
Andrew Farmer, Christian Höner zu Siederdissen, Andy Gill
The HERMIT in the stream: fusing stream fusion's concatMap. PEPM (2014)
Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler
Comparative Detection of Processed Small RNAs in Archaea. IWBBIO (2014)
Christian Höner zu Siederdissen, Ivo L. Hofacker, Peter F. Stadler
How to Multiply Dynamic Programming Algorithms. BSB (2013)
Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (4) (2013)
Florian Eggenhofer, Ivo L. Hofacker, Christian Höner zu Siederdissen
CMCompare webserver: comparing RNA families via covariance models. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
RNA Folding Algorithms with G-Quadruplexes. BSB (2012)
Christian Höner zu Siederdissen
Sneaking around concatMap: efficient combinators for dynamic programming. ICFP (2012)
Christian Höner zu Siederdissen, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker
A folding algorithm for extended RNA secondary structures. Bioinform. 27 (13) (2011)
Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
ViennaRNA Package 2.0. Algorithms Mol. Biol. 6 (2011)
Robert Giegerich, Christian Höner zu Siederdissen
Semantics and Ambiguity of Stochastic RNA Family Models. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Christian Höner zu Siederdissen, Ivo L. Hofacker
Discriminatory power of RNA family models. Bioinform. 26 (18) (2010)
Christian Höner zu Siederdissen, Susanne Ragg, Sven Rahmann
Discovering Biomarkers for Myocardial Infarction from SELDI-TOF Spectra. GfKl (2006)