Sonja J. Prohaska

Publication Activity (10 Years)

Years Active: 2004-2016
Publications (10 Years): 2

Top Topics

Pairwise Comparison

Coefficient Matrix

Top Venues

Algorithms Mol. Biol.

Publications

Henrike Indrischek, Nicolas Wieseke, Peter F. Stadler, Sonja J. Prohaska
The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies. Algorithms Mol. Biol. 11 (2016)
David C. Krakauer, Lydia Müller, Sonja J. Prohaska, Peter F. Stadler
Design specifications for cellular regulation. Theory Biosci. 135 (4) (2016)
Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler
Algebraic Dynamic Programming over general data structures. BMC Bioinform. 16 (S19) (2015)
Manfred D. Laubichler, Peter F. Stadler, Sonja J. Prohaska, Katja Nowick
The relativity of biological function. Theory Biosci. 134 (3-4) (2015)
Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler
Dynamic Programming for Set Data Types. BSB (2014)
Bernhard Misof, Karen Meusemann, Björn Marcus von Reumont, Patrick Kück, Sonja J. Prohaska, Peter F. Stadler
A priori assessment of data quality in molecular phylogenetics. Algorithms Mol. Biol. 9 (2014)
Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler
Comparative Detection of Processed Small RNAs in Archaea. IWBBIO (2014)
Dirk Zeckzer, Daniel Gerighausen, Lydia Steiner, Sonja J. Prohaska
Analyzing Chromatin Using Tiled Binned Scatterplot Matrices. CoRR (2014)
Wolfgang Otto, Peter F. Stadler, Sonja J. Prohaska
Phylogenetic Footprinting and Consistent Sets of Local Aligments. CPM (2011)
Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis. BMC Bioinform. 12 (2011)
Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska
Detection of Protein Domains in Eukaryotic Genome Sequences. BSB (2010)
Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska
Quantitative Comparison of Genomic-Wide Protein Domain Distributions. GCB (2010)
Peter F. Stadler, Sonja J. Prohaska, Christian V. Forst, David C. Krakauer
Defining genes: a computational framework. Theory Biosci. 128 (3) (2009)
Andreas Heffel, Sonja J. Prohaska, Peter F. Stadler, Gerhard Kauer, Jens-Peer Kuska
Automatic Classification of Embryonic Fruit Fly Gene Expression Patterns. Bildverarbeitung für die Medizin (2009)
Axel Mosig, Türker Bíyíkoglu, Sonja J. Prohaska, Peter F. Stadler
Discovering cis-regulatory modules by optimizing barbecues. Discret. Appl. Math. 157 (10) (2009)
Andreas Heffel, Peter F. Stadler, Sonja J. Prohaska, Gerhard Kauer, Jens-Peer Kuska
Process flow for classification and clustering of fruit fly gene expression patterns. ICIP (2008)
Jörg Lehmann, Peter F. Stadler, Sonja J. Prohaska
SynBlast: Assisting the analysis of conserved synteny information. BMC Bioinform. 9 (2008)
Sonja J. Prohaska, Peter F. Stadler
"Genes". Theory Biosci. 127 (3) (2008)
Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler
Noisy: Identification of problematic columns in multiple sequence alignments. Algorithms Mol. Biol. 3 (2008)
Burkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler
Multiple sequence alignment with user-defined anchor points. Algorithms Mol. Biol. 1 (2006)
Athanasius F. Bompfünewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L. Hofacker, Jörg Lehmann, Kristin Missal, Axel Mosig, Bettina Müller, Sonja J. Prohaska, Bärbel M. R. Stadler, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, Christina Witwer
Evolutionary patterns of non-coding RNAs. Theory Biosci. 123 (4) (2005)
Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff
Multiple sequence alignment with user-defined constraints at GOBICS. Bioinform. 21 (7) (2005)
Claudia Fried, Wim Hordijk, Sonja J. Prohaska, Claus R. Stadler, Peter F. Stadler
The Footprint Sorting Problem. J. Chem. Inf. Model. 44 (2) (2004)
Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler
Multiple sequence alignment with user-defined constraints. German Conference on Bioinformatics (2004)
Sonja J. Prohaska, Peter F. Stadler
gene clusters in teleost fishes. Theory Biosci. 123 (1) (2004)