Burkhard Morgenstern

ORCID

Publication Activity (10 Years)

Years Active: 1997-2022
Publications (10 Years): 10

Top Venues

Bielefeld University, Germany (PHD)

Education History

Bielefeld University, Germany

PHD

Publications

Niklas Birth, Thomas Dencker, Burkhard Morgenstern
Insertions and deletions as phylogenetic signal in an alignment-free context. PLoS Comput. Biol. 18 (8) (2022)
Angana Chakraborty, Burkhard Morgenstern, Sanghamitra Bandyopadhyay
S-conLSH: alignment-free gapped mapping of noisy long reads. BMC Bioinform. 22 (1) (2021)
Anna-Katharina Lau, Svenja Dörrer, Chris-André Leimeister, Christoph Bleidorn, Burkhard Morgenstern
Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage. BMC Bioinform. (20) (2019)
Chris-André Leimeister, Thomas Dencker, Burkhard Morgenstern
Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points. Bioinform. 35 (2) (2019)
Thomas Dencker, Chris-André Leimeister, Michael Gerth, Christoph Bleidorn, Sagi Snir, Burkhard Morgenstern
Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees. RECOMB-CG (2018)
Chris-André Leimeister, Salma Sohrabi-Jahromi, Burkhard Morgenstern
Fast and accurate phylogeny reconstruction using filtered spaced-word matches. Bioinform. 33 (7) (2017)
Burkhard Morgenstern, Svenja Schöbel, Chris-André Leimeister
Phylogeny reconstruction based on the length distribution of k-mismatch common substrings. Algorithms Mol. Biol. 12 (1) (2017)
Lars Hahn, Chris-André Leimeister, Rachid Ounit, Stefano Lonardi, Burkhard Morgenstern
rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison. PLoS Comput. Biol. 12 (10) (2016)
Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege, Chris Leimeister
Estimating evolutionary distances between genomic sequences from spaced-word matches. Algorithms Mol. Biol. 10 (2015)
Lars Hahn, Chris-André Leimeister, Burkhard Morgenstern
RasBhari: optimizing spaced seeds for database searching, read mapping and alignment-free sequence comparison. CoRR (2015)
Sebastian Horwege, Sebastian Lindner, Marcus Boden, Klas Hatje, Martin Kollmar, Chris-André Leimeister, Burkhard Morgenstern
: fast alignment-free sequence comparison based on inexact word matches. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Chris-André Leimeister, Marcus Boden, Sebastian Horwege, Sebastian Lindner, Burkhard Morgenstern
Fast alignment-free sequence comparison using spaced-word frequencies. Bioinform. 30 (14) (2014)
Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege, Chris-André Leimeister
Estimating Evolutionary Distances from Spaced-Word Matches. WABI (2014)
Chris-André Leimeister, Burkhard Morgenstern
-mismatch average common substring approach to alignment-free sequence comparison. Bioinform. 30 (14) (2014)
Marcus Boden, Martin Schöneich, Sebastian Horwege, Sebastian Lindner, Chris Leimeister, Burkhard Morgenstern
Alignment-free sequence comparison with spaced k-mers. GCB (2013)
Layal Al Ait, Zaher Yamak, Burkhard Morgenstern
DIALIGN at GOBICS - multiple sequence alignment using various sources of external information. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Anne-Kathrin Schultz, Ingo Bulla, Mariama Abdou-Chekaraou, Emmanuel Gordien, Burkhard Morgenstern, Fabien Zoulim, Paul Dény, Mario Stanke
jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Layal Al Ait, Eduardo Corel, Burkhard Morgenstern
Using protein-domain information for multiple sequence alignment. BIBE (2012)
Cong V. C. Truong, Linn F. Groeneveld, Burkhard Morgenstern, Eildert Groeneveld
MolabIS - An Integrated Information System for Storing and Managing Molecular Genetics Data. BMC Bioinform. 12 (2011)
Thomas Unterthiner, Anne-Kathrin Schultz, Jan Bulla, Burkhard Morgenstern, Mario Stanke, Ingo Bulla
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown. BMC Bioinform. 12 (2011)
Eduardo Corel, Florian Pitschi, Burkhard Morgenstern
algorithm for the consistency problem in multiple sequence alignment. Bioinform. 26 (8) (2010)
Amarendran R. Subramanian, Suvrat Hiran, Rasmus Steinkamp, Peter Meinicke, Eduardo Corel, Burkhard Morgenstern
DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Ingo Bulla, Anne-Kathrin Schultz, Fabian Schreiber, Ming Zhang, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
HIV classification using the coalescent theory. Bioinform. 26 (11) (2010)
Dietmar Sommerfeld, Thomas Lingner, Mario Stanke, Burkhard Morgenstern, Harald Richter
AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis. Future Gener. Comput. Syst. 25 (3) (2009)
Fabian Schreiber, Kerstin Pick, Dirk Erpenbeck, Gert Wörheide, Burkhard Morgenstern
OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. BMC Bioinform. 10 (2009)
Fabian Schreiber, Gert Wörheide, Burkhard Morgenstern
OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Anne-Kathrin Schultz, Ming Zhang, Ingo Bulla, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
jpHMM: Improving the reliability of recombination prediction in HIV-1. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. Algorithms Mol. Biol. 3 (2008)
Holger Wagner, Burkhard Morgenstern, Andreas W. M. Dress
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family. Algorithms Mol. Biol. 3 (2008)
Katharina Jasmin Hoff, Maike Tech, Thomas Lingner, Rolf Daniel, Burkhard Morgenstern, Peter Meinicke
Gene prediction in metagenomic fragments: A large scale machine learning approach. BMC Bioinform. 9 (2008)
Peter Meinicke, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Göbel, Ivo Feussner, Petr Karlovsky, Burkhard Morgenstern
Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps. Algorithms Mol. Biol. 3 (2008)
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, Carla Kuiken, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. BMC Bioinform. 7 (2006)
Ming Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Burkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler
Multiple sequence alignment with user-defined anchor points. Algorithms Mol. Biol. 1 (2006)
Burkhard Morgenstern, Peter F. Stadler
New journal: Algorithms for Molecular Biology. Algorithms Mol. Biol. 1 (2006)
Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern
prediction of alternative transcripts. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Maike Tech, Burkhard Morgenstern, Peter Meinicke
TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinform. 7 (2006)
Maike Tech, Nico Pfeifer, Burkhard Morgenstern, Peter Meinicke
TICO: a tool for improving predictions of prokaryotic translation initiation sites. Bioinform. 21 (17) (2005)
Mario Stanke, Burkhard Morgenstern
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Dirk Pöhler, Nadine Werner, Rasmus Steinkamp, Burkhard Morgenstern
Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann, Burkhard Morgenstern
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. BMC Bioinform. 6 (2005)
Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff
Multiple sequence alignment with user-defined constraints at GOBICS. Bioinform. 21 (7) (2005)
Martin Schmollinger, Kay Nieselt, Michael Kaufmann, Burkhard Morgenstern
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors. BMC Bioinform. 5 (2004)
Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern
The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Burkhard Morgenstern
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl
Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites. BMC Bioinform. 5 (2004)
Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler
Multiple sequence alignment with user-defined constraints. German Conference on Bioinformatics (2004)
Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Burkhard Morgenstern
AGenDA: gene prediction by cross-species sequence comparison. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern
AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern
AGenDA: homology-based gene prediction. Bioinform. 19 (12) (2003)
Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern
Fast and sensitive multiple alignment of large genomic sequences. BMC Bioinform. 4 (2003)
Burkhard Morgenstern, Sachin Goel, Alexander Sczyrba, Andreas W. M. Dress
AltAVisT: Comparing alternative multiple sequence alignments. Bioinform. 19 (3) (2003)
Michael Sammeth, Burkhard Morgenstern, Jens Stoye
Divide-and-conquer multiple alignment with segment-based constraints. ECCB (2003)
Burkhard Morgenstern
A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences. Appl. Math. Lett. 15 (1) (2002)
Oliver Rinner, Burkhard Morgenstern
AGenDA: Gene prediction by comparative sequence analysis. Silico Biol. 2 (3) (2002)
Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil
MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 30 (1) (2002)
Michael Brudno, Burkhard Morgenstern
Fast and Sensitive Alignment of Large Genomic Sequences. CSB (2002)
Burkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, Hans-Werner Mewes
Exon discovery by genomic sequence alignment. Bioinform. 18 (6) (2002)
Oliver Rinner, Burkhard Morgenstern
Gene prediction by comparative sequence analysis. German Conference on Bioinformatics (2001)
Birgitta Geier, Gabi Kastenmüller, Matthias Fellenberg, Hans-Werner Mewes, Burkhard Morgenstern
The HIB database of annotated UniGene clusters. Bioinform. 17 (6) (2001)
Saïd Abdeddaïm, Burkhard Morgenstern
Speeding Up the DIALIGN Multiple Alignment Program by Using the 'Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB). JOBIM (2000)
Burkhard Morgenstern
A space-efficient algorithm for aligning large genomic sequences. Bioinform. 16 (10) (2000)
Burkhard Morgenstern
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinform. 15 (3) (1999)
Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert
An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinform. 15 (3) (1999)
Burkhard Morgenstern
DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment. German Conference on Bioinformatics (1998)
Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern
An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics (1998)
Burkhard Morgenstern, William R. Atchley, Klaus Hahn, Andreas W. M. Dress
Segment-Based Scores for Pairwise and Multiple Sequence Alignments. ISMB (1998)
Burkhard Morgenstern, Kornelie Frech, Andreas W. M. Dress, Thomas Werner
DIALIGN: finding local similarities by multiple sequence alignment. Bioinform. 14 (3) (1998)
Burkhard Morgenstern, Thomas Werner
Dialign 1.0: Multiple alignment by Segment rather than by Position comparison. German Conference on Bioinformatics (1997)

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Publication Activity (10 Years)

Top Topics

Top Venues

Burkhard Morgenstern