Dmitrij Frishman

Publication Activity (10 Years)

Years Active: 1996-2024
Publications (10 Years): 10

Top Topics

Structural Features

Protein Structure

Subcellular Localization

Top Venues

Briefings Bioinform.

Publications

Alma Davidson, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans. RECOMB-CG (2024)
Anja Mösch, Dmitrij Frishman
TCRpair: prediction of functional pairing between HLA-A*02: 01-restricted T-cell receptor α and β chains. Bioinform. 37 (21) (2021)
Jan Zaucha, Michael Heinzinger, A. Kulandaisamy, Evans Kataka, Óscar Llorian Salvádor, Petr Popov, Burkhard Rost, M. Michael Gromiha, Boris S. Zhorov, Dmitrij Frishman
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins. Briefings Bioinform. 22 (3) (2021)
Peter Hönigschmid, Stephan Breimann, Martina Weigl, Dmitrij Frishman
AllesTM: predicting multiple structural features of transmembrane proteins. BMC Bioinform. 21 (1) (2020)
A. Kulandaisamy, S. Binny Priya, R. Sakthivel, Svetlana Tarnovskaya, Ilya Bizin, Peter Hönigschmid, Dmitrij Frishman, M. Michael Gromiha
MutHTP: mutations in human transmembrane proteins. Bioinform. 34 (13) (2018)
Fei Qi, Magdalena Motz, Kirsten Jung, Jürgen Lassak, Dmitrij Frishman
Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation. PLoS Comput. Biol. 14 (2) (2018)
Hannah F. Löchel, Mona Riemenschneider, Dmitrij Frishman, Dominik Heider
SCOTCH: subtype A coreceptor tropism classification in HIV-1. Bioinform. 34 (15) (2018)
Victor Jaravine, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman
Assessment of cancer and virus antigens for cross-reactivity in human tissues. Bioinform. 33 (1) (2017)
David M. Kristensen, Usman Saeed, Dmitrij Frishman, Eugene V. Koonin
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea. BMC Bioinform. 16 (2015)
Kerstin Haase, Silke Raffegerst, Dolores J. Schendel, Dmitrij Frishman
Expitope: a web server for epitope expression. Bioinform. 31 (11) (2015)
Manja Marz, Niko Beerenwinkel, Christian Drosten, Markus Fricke, Dmitrij Frishman, Ivo L. Hofacker, Dieter Hoffmann, Martin Middendorf, Thomas Rattei, Peter F. Stadler, Armin Töpfer
Challenges in RNA virus bioinformatics. Bioinform. 30 (13) (2014)
Philipp Blohm, Goar Frishman, Pawel Smialowski, Florian Goebels, Benedikt Wachinger, Andreas Ruepp, Dmitrij Frishman
Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis. Nucleic Acids Res. 42 (Database-Issue) (2014)
Florian Goebels, Dmitrij Frishman
Prediction of protein interaction types based on sequence and network features. BMC Syst. Biol. 7 (S-6) (2013)
Dmitry N. Ivankov, Natalya S. Bogatyreva, Peter Hönigschmid, Bastian Dislich, Sebastian Hogl, Peer-Hendrik Kuhn, Dmitrij Frishman, Stefan F. Lichtenthaler
QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Andrey Chursov, Sebastian J. Kopetzky, Gennady Bocharov, Dmitrij Frishman, Alexander Shneider
RNAtips: analysis of temperature-induced changes of RNA secondary structure. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1 (4) (2013)
Stefka Tyanova, Jürgen Cox, Jesper V. Olsen, Matthias Mann, Dmitrij Frishman
Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins. PLoS Comput. Biol. 9 (1) (2013)
Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis, Thomas Rattei, Mathias C. Walter, Dmitrij Frishman, Karsten Suhre, Manuel Spannagl, Klaus F. X. Mayer, Volker Stümpflen, Alexey V. Antonov
MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res. 39 (Database-Issue) (2011)
Qibin Luo, Philipp Pagel, Baiba Vilne, Dmitrij Frishman
DIMA 3.0: Domain Interaction Map. Nucleic Acids Res. 39 (Database-Issue) (2011)
Andreas Kowarsch, Angelika Fuchs, Dmitrij Frishman, Philipp Pagel
Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions. PLoS Comput. Biol. 6 (9) (2010)
Martin Sturm, Michael Hackenberg, David Langenberger, Dmitrij Frishman
TargetSpy: a supervised machine learning approach for microRNA target prediction. BMC Bioinform. 11 (2010)
Pawel Smialowski, Dmitrij Frishman, Stefan Kramer
Pitfalls of supervised feature selection. Bioinform. 26 (3) (2010)
Pawel Smialowski, Philipp Pagel, Philip Wong, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, Corinna Montrone, Thomas Rattei, Dmitrij Frishman, Andreas Ruepp
The Negatome database: a reference set of non-interacting protein pairs. Nucleic Acids Res. 38 (Database-Issue) (2010)
Mathias C. Walter, Thomas Rattei, Roland Arnold, Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner Mewes, Dmitrij Frishman
PEDANT covers all complete RefSeq genomes. Nucleic Acids Res. 37 (Database-Issue) (2009)
Hans-Werner Mewes, Sabine Dietmann, Dmitrij Frishman, Richard Gregory, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Münsterkötter, Andreas Ruepp, Manuel Spannagl, Volker Stümpflen, Thomas Rattei
MIPS: analysis and annotation of genome information in 2007. Nucleic Acids Res. 36 (Database-Issue) (2008)
Philipp Pagel, Matthias Oesterheld, Oksana Tovstukhina, Normann Strack, Volker Stümpflen, Dmitrij Frishman
DIMA 2.0 - predicted and known domain interactions. Nucleic Acids Res. 36 (Database-Issue) (2008)
Angelika Fuchs, Antonio J. Martin-Galiano, Matan Kalman, Sarel Jacob Fleishman, Nir Ben-Tal, Dmitrij Frishman
Co-evolving residues in membrane proteins. Bioinform. 23 (24) (2007)
M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans-Werner Mewes, Dmitrij Frishman
PEDANT genome database: 10 years online. Nucleic Acids Res. 35 (Database-Issue) (2007)
Pawel Smialowski, Antonio J. Martin-Galiano, Aleksandra Mikolajka, Tobias Girschick, Tad A. Holak, Dmitrij Frishman
Protein solubility: sequence based prediction and experimental verification. Bioinform. 23 (19) (2007)
Irena I. Artamonova, Goar Frishman, Dmitrij Frishman
Applying negative rule mining to improve genome annotation. BMC Bioinform. 8 (2007)
Philip Wong, Dmitrij Frishman
Fold Designability, Distribution, and Disease. PLoS Comput. Biol. 2 (5) (2006)
Thorsten Schmidt, Dmitrij Frishman
PROMPT: a protein mapping and comparison tool. BMC Bioinform. 7 (2006)
Philipp Pagel, Matthias Oesterheld, Volker Stümpflen, Dmitrij Frishman
The DIMA web resource - exploring the protein domain network. Bioinform. 22 (8) (2006)
Andreas Ruepp, Octave Noubibou Doudieu, Jos van den Oever, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Christine Skornia, Steffi Wanka, Thomas Rattei, Philipp Pagel, M. Louise Riley, Dmitrij Frishman, Dimitrij Surmeli, Igor V. Tetko, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. Nucleic Acids Res. 34 (Database-Issue) (2006)
Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen
MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Res. 34 (Database-Issue) (2006)
Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman
Biology, Computational Genomics and Evolutionary Biology. Bioinform. 21 (S3) (2005)
M. Louise Riley, Thorsten Schmidt, Christian Wagner, Hans-Werner Mewes, Dmitrij Frishman
The PEDANT genome database in 2005. Nucleic Acids Res. 33 (Database-Issue) (2005)
A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov
Alternative splicing and protein function. BMC Bioinform. 6 (2005)
Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand, Dmitrij Frishman
Mining sequence annotation databanks for association patterns. Bioinform. 21 (S3) (2005)
Philipp Pagel, Stefan Kovac, Matthias Oesterheld, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Pekka Mark, Volker Stümpflen, Hans-Werner Mewes, Andreas Ruepp, Dmitrij Frishman
The MIPS mammalian protein?Cprotein interaction database. Bioinform. 21 (6) (2005)
Matthias Heinig, Dmitrij Frishman
STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Hans-Werner Mewes, Clara Amid, Roland Arnold, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Philipp Pagel, Normann Strack, Volker Stümpflen, Jens Warfsmann, Andreas Ruepp
MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res. 32 (Database-Issue) (2004)
Marc N. Offman, Ramil N. Nurtdinov, Mikhail S. Gelfand, Dmitrij Frishman
No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions. BMC Bioinform. 5 (2004)
Philipp Pagel, Hans-Werner Mewes, Dmitrij Frishman
Conservation of protein-protein interactions among Ascomycota species. German Conference on Bioinformatics (2003)
Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, Christian Gruber, Birgitta Geier, Andreas Kaps, Kaj Albermann, Andreas Volz, Christian Wagner, Matthias Fellenberg, Klaus Heumann, Hans-Werner Mewes
The PEDANT genome database. Nucleic Acids Res. 31 (1) (2003)
Philip Wong, Grigory Kolesov, Dmitrij Frishman, Walid A. Houry
Phylogenetic Web Profiler. Bioinform. 19 (6) (2003)
Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil
MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 30 (1) (2002)
Grigory Kolesov, Hans-Werner Mewes, Dmitrij Frishman
SNAPper: gene order predicts gene function. Bioinform. 18 (7) (2002)
Dmitrij Frishman, Kaj Albermann, Jean Hani, Klaus Heumann, Agnes Metanomski, Alfred Zollner, Hans-Werner Mewes
Functional and structural genomics using PEDANT. Bioinform. 17 (1) (2001)
Hans-Werner Mewes, Dmitrij Frishman, Christian Gruber, Birgitta Geier, Dirk Haase, Andreas Kaps, Kai Lemcke, Gertrud Mannhaupt, Friedhelm Pfeiffer, Christine M. Schüller, S. Stocker, B. Weil
MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 28 (1) (2000)
Hans-Werner Mewes, Klaus Heumann, Andreas Kaps, Klaus F. X. Mayer, Friedhelm Pfeiffer, S. Stocker, Dmitrij Frishman
MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 27 (1) (1999)
Hans-Werner Mewes, Jean Hani, Friedhelm Pfeiffer, Dmitrij Frishman
MIPS: a database for protein sequences and complete genomes. Nucleic Acids Res. 26 (1) (1998)
Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand
Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics (1998)
Dmitrij Frishman, Klaus Heumann, Arthur M. Lesk, Hans-Werner Mewes
Comprehensive, comprehensible, distributed and intelligent databases: current status. Bioinform. 14 (7) (1998)
Kaj Albermann, M. Bähr, Dmitrij Frishman, A. Gleißner, Jean Hani, Klaus Heumann, Andreas Maierl, Alfred Zollner, Hans-Werner Mewes
The MIPS Yeast Genome Database. German Conference on Bioinformatics (1997)
Andreas Kaps, Klaus Heumann, Dmitrij Frishman, M. Bähr, Hans-Werner Mewes
Visualization and Analysis of the Complete Yeast Genome. German Conference on Bioinformatics - Selected Papers (1996)