Andrey Rzhetsky

Publication Activity (10 Years)

Years Active: 1994-2023
Publications (10 Years): 15

Top Topics

Association Studies

Top Venues

PLoS Comput. Biol.

Nat. Comput. Sci.

Publications

Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky
Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nat. Comput. Sci. 3 (7) (2023)
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nat. Comput. Sci. 3 (5) (2023)
Jonathan M. Matthews, Brooke Schuster, Sara Saheb Kashaf, Ping Liu, Rakefet Ben-Yishay, Dana Ishay-Ronen, Evgeny Izumchenko, Le Shen, Christopher R. Weber, Margaret Bielski, Sonia S. Kupfer, Mustafa Bilgic, Andrey Rzhetsky, Savas Tay
OrganoID: A versatile deep learning platform for tracking and analysis of single-organoid dynamics. PLoS Comput. Biol. 18 (11) (2022)
Alexander V. Belikov, Andrey Rzhetsky, James A. Evans
Prediction of robust scientific facts from literature. Nat. Mach. Intell. 4 (5) (2022)
Yanan Long, Qi Chen, Henrik Larsson, Andrey Rzhetsky
Observable variations in human sex ratio at birth. PLoS Comput. Biol. 17 (12) (2021)
Chao Zhang, Jaswanth Yella, Yu Huang, Xiaoye Qian, Sergei Petrov, Andrey Rzhetsky, Sthitie Bom
Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word. CoRR (2021)
Chao Zhang, Jaswanth Yella, Yu Huang, Xiaoye Qian, Sergei Petrov, Andrey Rzhetsky, Sthitie Bom
Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word. IEEE BigData (2021)
Chao Zhang, Hanxin Zhang, Atif Ali Khan, Ted Kim, Olasubomi Omoleye, Oluwamayomikun Abiona, Amy Lehman, Christopher O. Olopade, Olufunmilayo I. Olopade, Pedro Lopes, Andrey Rzhetsky
Lightweight Mobile Automated Assistant-to-physician for Global Lower-resource Areas. CoRR (2021)
Hanxin Zhang, Torsten Dahlén, Atif Ali Khan, Gustaf Edgren, Andrey Rzhetsky
Measurable health effects associated with the daylight saving time shift. PLoS Comput. Biol. 16 (6) (2020)
Alexander V. Belikov, Andrey Rzhetsky, James A. Evans
Detecting signal from science: The structure of research communities and prior knowledge improves prediction of genetic regulatory experiments. CoRR (2020)
Hrant Khachatrian, Lilit Nersisyan, Karen Hambardzumyan, Tigran Galstyan, Anna Hakobyan, Arsen Arakelyan, Andrey Rzhetsky, Aram Galstyan
BioRelEx 1.0: Biological Relation Extraction Benchmark. BioNLP@ACL (2019)
Ji-Sung Kim, Xin Gao, Andrey Rzhetsky
RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning. PLoS Comput. Biol. 14 (4) (2018)
Valentin Danchev, Andrey Rzhetsky, James A. Evans
Centralized "big science" communities more likely generate non-replicable results. CoRR (2018)
Ji-Sung Kim, Andrey Rzhetsky
RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning. CoRR (2017)
Andrey Rzhetsky
The Big Mechanism Program: Changing How Science Is Done. DAMDID/RCDL (2016)
Andrey Rzhetsky, Steven C. Bagley, Kanix Wang, Christopher S. Lyttle, Edwin H. Cook Jr., Russ B. Altman, Robert D. Gibbons
Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability. PLoS Comput. Biol. 10 (3) (2014)
Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
David R. Blair, Kanix Wang, Svetlozar Nestorov, James A. Evans, Andrey Rzhetsky
Quantifying the Impact and Extent of Undocumented Biomedical Synonymy. PLoS Comput. Biol. 10 (9) (2014)
Jacob G. Foster, Andrey Rzhetsky, James A. Evans
Tradition and Innovation in Scientists' Research Strategies CoRR (2013)
Larisa N. Soldatova, Andrey Rzhetsky, Kurt De Grave, Ross D. King
Representation of probabilistic scientific knowledge. J. Biomed. Semant. 4 (S-1) (2013)
Shi Yu, Robert Grossman, Andrey Rzhetsky
Global and Local Approach of Part-of-Speech Tagging for Large Corpora. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text (2012)
Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky
A distributed look-up architecture for text mining applications using MapReduce. SC (2011)
Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky
A distributed look-up architecture for text mining applications using mapreduce. HPDC (2011)
Anna Divoli, Eneida A. Mendonça, James A. Evans, Andrey Rzhetsky
Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis. PLoS Comput. Biol. 7 (10) (2011)
Andrey Rzhetsky
Understanding Etiology of Complex Neurodevelopmental Disorders: Two Approaches. AIME (2011)
Andrey Rzhetsky, James A. Evans
War of Ontology Worlds: Mathematics, Computer Code, or Esperanto? PLoS Comput. Biol. 7 (9) (2011)
Larisa N. Soldatova, Andrey Rzhetsky
Representation of research hypotheses. J. Biomed. Semant. 2 (S-2) (2011)
Lixia Yao, Anna Divoli, Ilya Mayzus, James A. Evans, Andrey Rzhetsky
Benchmarking Ontologies: Bigger or Better? PLoS Comput. Biol. 7 (1) (2011)
Sonjia Waxmonsky, John Goldsmith, Andrey Rzhetsky
Discovering and Counting Biomedical Verbs. ICMLA (2010)
Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur
How to Get the Most out of Your Curation Effort. PLoS Comput. Biol. 5 (5) (2009)
Andrey Rzhetsky, Michael R. Seringhaus, Mark B. Gerstein
Getting Started in Text Mining: Part Two. PLoS Comput. Biol. 5 (7) (2009)
Ivan Iossifov, Raul Rodriguez-Esteban, Ilya Mayzus, Kathleen J. Millen, Andrey Rzhetsky
Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Comput. Biol. 5 (11) (2009)
Lixia Yao, Andrey Rzhetsky
Quantitative systems-level determinants of drug targets. BMC Bioinform. 9 (S-10) (2008)
Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur
Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinform. 24 (18) (2008)
Andrey Rzhetsky
Mining biomedical texts for disease-related pathways. BioNLP@NAACL-HLT (2006)
W. John Wilbur, Andrey Rzhetsky, Hagit Shatkay
New directions in biomedical text annotation: definitions, guidelines and corpus construction. BMC Bioinform. 7 (2006)
Raul Rodriguez-Esteban, Ivan Iossifov, Andrey Rzhetsky
Imitating Manual Curation of Text-Mined Facts in Biomedicine. PLoS Comput. Biol. 2 (9) (2006)
Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman
Biology, Computational Genomics and Evolutionary Biology. Bioinform. 21 (S3) (2005)
Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. J. Biomed. Informatics 37 (1) (2004)
Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky
Probabilistic inference of molecular networks from noisy data sources. Bioinform. 20 (8) (2004)
Shawn M. Gomez, William Stafford Noble, Andrey Rzhetsky
Learning to predict protein-protein interactions from protein sequences. Bioinform. 19 (15) (2003)
Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky
Of truth and pathways: chasing bits of information through myriads of articles. ISMB (2002)
Carol Friedman, Pauline Kra, Andrey Rzhetsky
Two biomedical sublanguages: a description based on the theories of Zellig Harris. J. Biomed. Informatics 35 (4) (2002)
Shawn M. Gomez, Andrey Rzhetsky
Towards the Prediction of Complete Protein-Protein Interaction Networks. Pacific Symposium on Biocomputing (2002)
Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky, W. John Wilbur
Automatically identifying gene/protein terms in MEDLINE abstracts. J. Biomed. Informatics 35 (5-6) (2002)
Hong Yu, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky, W. John Wilbur
Automatic extraction of gene and protein synonyms from MEDLINE and journal articles. AMIA (2002)
Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. ISMB (Supplement of Bioinformatics) (2001)
Andrey Rzhetsky, Pavel Morozov
Markov Chain Monte Carlo Computation of Confidence Intervals for Substitution-Rate Variation in Proteins. Pacific Symposium on Biocomputing (2001)
Vasileios Hatzivassiloglou, Pablo Ariel Duboué, Andrey Rzhetsky
Disambiguating proteins, genes, and RNA in text: a machine learning approach. ISMB (Supplement of Bioinformatics) (2001)
Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics (2001)
Andrey Rzhetsky, Shawn M. Gomez
Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. Bioinform. 17 (10) (2001)
Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman
A knowledge model for analysis and simulation of regulatory networks. Bioinform. 16 (12) (2000)
Michael Krauthammer, Andrey Rzhetsky, Pavel Morozov, Carol Friedman
Using BLAST, A DNA and Protein Sequence Comparison Tool, for Finding Gene and Protein Names in Journal Articles. AMIA (2000)
Hong Yu, Carol Friedman, Andrey Rzhetsky, Pauline Kra
Representing genomic knowledge in the UMLS semantic network. AMIA (1999)
Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Pauline Kra, Carol Friedman
A Knowledge Model for Analysis and Simulation of Regulatory Based on Information in Electronic Publications. AMIA (1999)
Andrey Rzhetsky, Francisco José Ayala, Lily C. Hsu, Cheng Chang, Akira Yoshida
Fitting models of intron evolution to aldehyde dehydrogenase data. Mathematical Hierarchies and Biology (1996)
Andrey Rzhetsky, Masatoshi Nei
METREE: a program package for inferring and testing minimum-evolution trees. Comput. Appl. Biosci. 10 (4) (1994)