Nancy J. Cox

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 12

Top Topics

High Throughput

Influenza Virus

Association Studies

Top Venues

J. Am. Medical Informatics Assoc.

Nat. Comput. Sci.

Publications

Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky
Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nat. Comput. Sci. 3 (7) (2023)
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nat. Comput. Sci. 3 (5) (2023)
Nick Strayer, Siwei Zhang, Lydia Yao, Tess Vessels, Cosmin Adrian Bejan, Ryan S. Hsi, Jana K. Shirey-Rice, Justin M. Balko, Douglas B. Johnson, Elizabeth J. Phillips, Alex Bick, Todd L. Edwards, Digna R. Velez Edwards, Jill M. Pulley, Quinn Stanton Wells, Michael R. Savona, Nancy J. Cox, Dan M. Roden, Douglas M. Ruderfer, Yaomin Xu
Interactive network-based clustering and investigation of multimorbidity association matrices with associationSubgraphs. Bioinform. 39 (1) (2023)
Hufeng Zhou, Theodore Arapoglou, Xihao Li, Zilin Li, Xiuwen Zheng, Jill Moore, Abhijith Asok, Sushant Kumar, Elizabeth E. Blue, Steven Buyske, Nancy J. Cox, Adam Felsenfeld, Mark Gerstein, Eimear Kenny, Bingshan Li, Tara Cox Matise, Anthony Philippakis, Heidi L. Rehm, Heidi J. Sofia, Grace Snyder, Zhiping Weng, Benjamin M. Neale, Shamil R. Sunyaev, Xihong Lin
FAVOR: functional annotation of variants online resource and annotator for variation across the human genome. Nucleic Acids Res. 51 (D1) (2023)
Patrick Wu, Scott D. Nelson, Juan Zhao, Cosby A. Stone Jr., QiPing Feng, Qingxia Chen, Eric A. Larson, Bingshan Li, Nancy J. Cox, C. Michael Stein, Elizabeth Phillips, Dan M. Roden, Joshua C. Denny, Wei-Qi Wei
DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Neil S. Zheng, Jeremy L. Warner, Travis J. Osterman, Quinn S. Wells, Xiao-Ou Shu, Stephen A. Deppen, Seth J. Karp, Shon Dwyer, QiPing Feng, Nancy J. Cox, Josh F. Peterson, C. Michael Stein, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei
A retrospective approach to evaluating potential adverse outcomes associated with delay of procedures for cardiovascular and cancer-related diagnoses in the context of COVID-19. J. Biomed. Informatics 113 (2021)
Annika B. Faucon, Megan Shuey, Lea K. Davis, Nancy J. Cox
Implications of Clinical Bias When Building Electronic Algorithms for Medical Record Phenotyping: Lessons from Type 2 Diabetes Mellitus. AMIA (2021)
Neil S. Zheng, QiPing Feng, Vern Eric Kerchberger, Juan Zhao, Todd L. Edwards, Nancy J. Cox, C. Michael Stein, Dan M. Roden, Joshua C. Denny, Wei-Qi Wei
PheMap: a multi-resource knowledge base for high-throughput phenotyping within electronic health records. J. Am. Medical Informatics Assoc. 27 (11) (2020)
Hai Yang, Rui Chen, Quan Wang, Qiang Wei, Ying Ji, Guangze Zheng, Xue Zhong, Nancy J. Cox, Bingshan Li
De novo pattern discovery enables robust assessment of functional consequences of non-coding variants. Bioinform. 35 (9) (2019)
Xin Li, Yungil Kim, Emily K. Tsang, Joe R. Davis, Farhan N. Damani, Colby Chiang, Gaelen T. Hess, Zachary Zappala, Benjamin J. Strober, Alexandra J. Scott, Amy Li, Andrea Ganna, Michael C. Bassik, Jason D. Merker, François Aguet, Kristin G. Ardlie, Beryl B. Cummings, Ellen T. Gelfand, Gad Getz, Kane Hadley, Robert E. Handsaker, Katherine H. Huang, Seva Kashin, Konrad J. Karczewski, Monkol Lek, Xiao Li, Daniel G. MacArthur, Jared L. Nedzel, Duyen T. Nguyen, Michael S. Noble, Ayellet V. Segrè, Casandra A. Trowbridge, Taru Tukiainen, Nathan S. Abell, Brunilda Balliu, Ruth Barshir, Omer Basha, Alexis Battle, Gireesh K. Bogu, Andrew Brown, Christopher D. Brown, Stephane E. Castel, Lin S. Chen, Donald F. Conrad, Nancy J. Cox, Olivier Delaneau, Emmanouil T. Dermitzakis, Barbara E. Engelhardt, Eleazar Eskin, Pedro G. Ferreira, Laure Frésard, Eric R. Gamazon, Diego Garrido-Martín, Ariel D. H. Gewirtz, Genna Gliner, Michael J. Gloudemans, Roderic Guigó, Ira M. Hall, Buhm Han, Yuan He, Farhad Hormozdiari, Cedric Howald, Hae Kyung Im, Brian Jo, Eun Yong Kang, Sarah Kim-Hellmuth, Tuuli Lappalainen, Gen Li, Boxiang Liu, Serghei Mangul, Mark I. McCarthy, Ian C. McDowell, Pejman Mohammadi, Jean Monlong, Stephen B. Montgomery
The impact of rare variation on gene expression across tissues. Nat. 550 (7675) (2017)
Paul Geeleher, Eric R. Gamazon, Cathal Seoighe, Nancy J. Cox, Rong Stephanie Huang
Consistency in large pharmacogenomic studies. Nat. 540 (7631) (2016)
Sara Hillenmeyer, Lea K. Davis, Eric R. Gamazon, Edwin H. Cook Jr., Nancy J. Cox, Russ B. Altman
STAMS: STRING-assisted module search for genome wide association studies and application to autism. Bioinform. 32 (24) (2016)
Rui Chen, Qiang Wei, Xiaowei Zhan, Xue Zhong, James S. Sutcliffe, Nancy J. Cox, Edwin H. Cook Jr., Chun Li, Wei Chen, Bingshan Li
A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. Bioinform. 31 (9) (2015)
Wei Zhang, Eric R. Gamazon, Xu Zhang, Anuar Konkashbaev, Cong Liu, Keely L. Szilágyi, M. Eileen Dolan, Nancy J. Cox
SCAN database: facilitating integrative analyses of cytosine modification and expression QTL. Database J. Biol. Databases Curation 2015 (2015)
Trevor Bedford, Steven Riley, Ian G. Barr, Shobha Broor, Mandeep Chadha, Nancy J. Cox, Rodney S. Daniels, C. Palani Gunasekaran, Aeron C. Hurt, Anne Kelso, Alexander Klimov, Nicola S. Lewis, Xiyan Li, John W. McCauley, Takato Odagiri, Varsha Potdar, Andrew Rambaut, Yuelong Shu, Eugene Skepner, Derek J. Smith, Marc A. Suchard, Masato Tashiro, Dayan Wang, Xiyan Xu, Philippe Lemey, Colin A. Russell
Global circulation patterns of seasonal influenza viruses vary with antigenic drift. Nat. 523 (7559) (2015)
Vassily Trubetskoy, Alex Rodriguez, Uptal J. Dave, Nicholas Campbell, Emily L. Crawford, Edwin H. Cook Jr., James S. Sutcliffe, Ian T. Foster, Ravi K. Madduri, Nancy J. Cox, Lea K. Davis
Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes. Bioinform. 31 (2) (2015)
Younghee Lee, Haiquan Li, Jianrong Li, Ellen Rebman, Ikbel Achour, Kelly Regan, Eric R. Gamazon, James L. Chen, Xinan Holly Yang, Nancy J. Cox, Yves A. Lussier
Research and applications: Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases. J. Am. Medical Informatics Assoc. 20 (4) (2013)
Marylyn D. Ritchie, Nancy J. Cox, Cheng Cheng, Scott Weiss, Teri E. Klein, Russ B. Altman
Systems Pharmacogenomics-Bridging the Gap. Pacific Symposium on Biocomputing (2012)
Eric R. Gamazon, Wei Zhang, Anuar Konkashbaev, Shiwei Duan, Emily O. Kistner, Dan L. Nicolae, M. Eileen Dolan, Nancy J. Cox
SCAN: SNP and copy number annotation. Bioinform. 26 (2) (2010)
Dan L. Nicolae, Xiaolin Wu, Kazuaki Miyake, Nancy J. Cox
GEL: a novel genotype calling algorithm using empirical likelihood. Bioinform. 22 (16) (2006)