Eleazar Eskin

Publication Activity (10 Years)

Years Active: 1999-2022
Publications (10 Years): 20

Top Venues

J. Comput. Biol.

RECOMB

Bioinform.

ICCABS

Publications

Mohammed Alser, Sharon Waymost, Ram Ayyala, Brendan Lawlor, Richard J. Abdill, Neha Rajkumar, Nathan LaPierre, Jaqueline J. Brito, Andre M. Ribeiro-dos-Santos, Can Firtina, Nour Almadhoun, Varuni Sarwal, Eleazar Eskin, Qiyang Hu, Derek Strong, Byoung-Do Kim, Malak S. Abedalthagafi, Onur Mutlu, Serghei Mangul
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities. CoRR (2022)
Varuni Sarwal, Sebastian Niehus, Ram Ayyala, Minyoung Kim, Aditya Sarkar, Sei Chang, Angela Lu, Neha Rajkumar, Nicholas Darfci-Maher, Russell Littman, Karishma Chhugani, Arda Soylev, Zoia Comarova, Emily Wesel, Jacqueline Castellanos, Rahul Chikka, Margaret G. Distler, Eleazar Eskin, Jonathan Flint, Serghei Mangul
A comprehensive benchmarking of WGS-based deletion structural variant callers. Briefings Bioinform. 23 (4) (2022)
Yue Wu, Eleazar Eskin, Sriram Sankararaman
A Unifying Framework for Imputing Summary Statistics in Genome-Wide Association Studies. J. Comput. Biol. 27 (3) (2020)
Nathan LaPierre, Kodi Taraszka, Helen Huang, Rosemary He, Farhad Hormozdiari, Eleazar Eskin
Identifying Causal Variants by Fine Mapping Across Multiple Studies. RECOMB (2020)
Keith Mitchell, Jaqueline J. Brito, Igor Mandric, Qiaozhen Wu, Sergey Knyazev, Sei Chang, Lana S. Martin, Aaron Karlsberg, Ekaterina Gerasimov, Russell Littman, Brian L. Hill, Nicholas C. Wu, Harry (Taegyun) Yang, Kevin Hsieh, Linus Chen, Eli Littman, Taylor Shabani, German Enik, Douglas Yao, Ren Sun, Jan Schroeder, Eleazar Eskin, Alex Zelikovsky, Pavel Skums, Mihai Pop, Serghei Mangul
Benchmarking of computational error-correction methods for next-generation sequencing data. BCB (2020)
Dat Duong, Wasi Uddin Ahmad, Eleazar Eskin, Kai-Wei Chang, Jingyi Jessica Li
Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions. J. Comput. Biol. 26 (1) (2019)
Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin
Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. J. Comput. Biol. 26 (11) (2019)
Lisa Gai, Eleazar Eskin
Finding associated variants in genome-wide association studies on multiple traits. Bioinform. 34 (13) (2018)
Yue Wu, Eleazar Eskin, Sriram Sankararaman
A Unifying Framework for Summary Statistic Imputation. RECOMB (2018)
Dan He, Zhanyong Wang, Laxmi Parida, Eleazar Eskin
IPED2: Inheritance Path Based Pedigree Reconstruction Algorithm for Complicated Pedigrees. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. J. Comput. Biol. 24 (6) (2017)
Gleb Kichaev, Megan Roytman, Ruth Johnson, Eleazar Eskin, Sara Lindström, Peter Kraft, Bogdan Pasaniuc
Improved methods for multi-trait fine mapping of pleiotropic risk loci. Bioinform. 33 (2) (2017)
Dat Duong, Lisa Gai, Sagi Snir, Eun Yong Kang, Buhm Han, Jae Hoon Sul, Eleazar Eskin
Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes. Bioinform. 33 (14) (2017)
Xin Li, Yungil Kim, Emily K. Tsang, Joe R. Davis, Farhan N. Damani, Colby Chiang, Gaelen T. Hess, Zachary Zappala, Benjamin J. Strober, Alexandra J. Scott, Amy Li, Andrea Ganna, Michael C. Bassik, Jason D. Merker, François Aguet, Kristin G. Ardlie, Beryl B. Cummings, Ellen T. Gelfand, Gad Getz, Kane Hadley, Robert E. Handsaker, Katherine H. Huang, Seva Kashin, Konrad J. Karczewski, Monkol Lek, Xiao Li, Daniel G. MacArthur, Jared L. Nedzel, Duyen T. Nguyen, Michael S. Noble, Ayellet V. Segrè, Casandra A. Trowbridge, Taru Tukiainen, Nathan S. Abell, Brunilda Balliu, Ruth Barshir, Omer Basha, Alexis Battle, Gireesh K. Bogu, Andrew Brown, Christopher D. Brown, Stephane E. Castel, Lin S. Chen, Donald F. Conrad, Nancy J. Cox, Olivier Delaneau, Emmanouil T. Dermitzakis, Barbara E. Engelhardt, Eleazar Eskin, Pedro G. Ferreira, Laure Frésard, Eric R. Gamazon, Diego Garrido-Martín, Ariel D. H. Gewirtz, Genna Gliner, Michael J. Gloudemans, Roderic Guigó, Ira M. Hall, Buhm Han, Yuan He, Farhad Hormozdiari, Cedric Howald, Hae Kyung Im, Brian Jo, Eun Yong Kang, Sarah Kim-Hellmuth, Tuuli Lappalainen, Gen Li, Boxiang Liu, Serghei Mangul, Mark I. McCarthy, Ian C. McDowell, Pejman Mohammadi, Jean Monlong, Stephen B. Montgomery
The impact of rare variation on gene expression across tissues. Nat. 550 (7675) (2017)
Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin
Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. RECOMB (2017)
Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin, Eran Halperin
A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference. RECOMB (2017)
C. H. Lee, Eleazar Eskin, Buhm Han
Increasing the power of meta-analysis of genome-wide association studies to detect heterogeneous effects. Bioinform. 33 (14) (2017)
Dat Duong, Jennifer Zou, Farhad Hormozdiari, Jae Hoon Sul, Jason Ernst, Buhm Han, Eleazar Eskin
Using genomic annotations increases statistical power to detect eGenes. Bioinform. 32 (12) (2016)
Serghei Mangul, Harry (Taegyun) Yang, Farhad Hormozdiari, Elizabeth Tseng, Alex Zelikovsky, Eleazar Eskin
HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. ISBRA (2016)
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. RECOMB (2016)
Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc
A Spatial Haplotype Copying Model with Applications to Genotype Imputation. J. Comput. Biol. 22 (5) (2015)
Zhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin
Gene-Gene Interactions Detection Using a Two-stage Model. J. Comput. Biol. 22 (6) (2015)
Farhad Hormozdiari, Gleb Kichaev, Wen-Yun Yang, Bogdan Pasaniuc, Eleazar Eskin
Identification of causal genes for complex traits. Bioinform. 31 (12) (2015)
Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nicholas A. Furlotte, Brian Parks, Aldons J. Lusis, Eleazar Eskin
Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure. RECOMB (2015)
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
2SNV: Quasispecies reconstruction from PacBio reads. ICCABS (2015)
Eleazar Eskin
Discovering genes involved in disease and the mystery of missing heritability. Commun. ACM 58 (10) (2015)
Farhad Hormozdiari, Eleazar Eskin
Memory efficient assembly of human genome. J. Bioinform. Comput. Biol. 13 (2) (2015)
Farhad Hormozdiari, Jong Wha J. Joo, Akshay Wadia, Feng Guan, Rafail Ostrovsky, Amit Sahai, Eleazar Eskin
Privacy preserving protocol for detecting genetic relatives using rare variants. Bioinform. 30 (12) (2014)
Zhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin
Gene-Gene Interactions Detection Using a Two-Stage Model. RECOMB (2014)
Serghei Mangul, Nicholas C. Wu, Nicholas Mancuso, Alex Zelikovsky, Ren Sun, Eleazar Eskin
Accurate viral population assembly from ultra-deep sequencing data. Bioinform. 30 (12) (2014)
Buhm Han, Eun Yong Kang, Soumya Raychaudhuri, Paul I. W. de Bakker, Eleazar Eskin
Fast pairwise IBD association testing in genome-wide association studies. Bioinform. 30 (2) (2014)
Dan He, Zhanyong Wang, Laxmi Parida, Eleazar Eskin
IPED2: inheritance path based pedigree reconstruction algorithm for complicated pedigrees. BCB (2014)
Alexander Artyomenko, Serghei Mangul, Nicholas C. Wu, Eleazar Eskin, Ren Sun, Alex Zelikovsky
Reconstruction of influenza a virus variants from PacBio reads. ICCABS (2014)
Dan He, Zhanyong Wang, Laxmi Parida, Eleazar Eskin
IPED2: Inheritance Path based Pedigree Reconstruction Algorithm for Complicated Pedigrees. CoRR (2014)
Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc
A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. RECOMB (2014)
Dan He, Eleazar Eskin
IPED2X: A robust pedigree reconstruction algorithm for complicated pedigrees. J. Bioinform. Comput. Biol. 12 (6) (2014)
Farhad Hormozdiari, Emrah Kostem, Eun Yong Kang, Bogdan Pasaniuc, Eleazar Eskin
Identifying causal variants at loci with multiple signals of association. BCB (2014)
Serghei Mangul, Nicholas C. Wu, Nicholas Mancuso, Alex Zelikovsky, Ren Sun, Eleazar Eskin
VGA: A method for viral quasispecies assembly from ultra-deep sequencing data. ICCABS (2014)
Dan He, Eleazar Eskin
IPEDX: An exact algorithm for pedigree reconstruction using genotype data. BIBM (2013)
Dan He, Buhm Han, Eleazar Eskin
Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data. J. Comput. Biol. 20 (2) (2013)
Emrah Kostem, Eleazar Eskin
Efficiently Identifying Significant Associations in Genome-Wide Association Studies. RECOMB (2013)
Nathaniel Parrish, Benjamin Sudakov, Eleazar Eskin
Genome reassembly with high-throughput sequencing data. BMC Genom. 14 (S-1) (2013)
Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. J. Comput. Biol. 20 (3) (2013)
Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin
IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data. RECOMB (2013)
Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Christine F. Skibola, Eleazar Eskin, Eran Halperin
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. J. Comput. Biol. 20 (11) (2013)
Emrah Kostem, Eleazar Eskin
Efficiently Identifying Significant Associations in Genome-wide Association Studies. J. Comput. Biol. 20 (10) (2013)
Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He, Bogdan Pasaniuc, Eleazar Eskin
Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinform. 29 (18) (2013)
Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin
IPED: Inheritance Path-based Pedigree Reconstruction Algorithm Using Genotype Data. J. Comput. Biol. 20 (10) (2013)
Farhad Hormozdiari, Eleazar Eskin
Memory efficient assembly of human genome. ICCABS (2013)
Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Chris Skibola, Eleazar Eskin, Eran Halperin
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. RECOMB (2013)
Gregory Darnell, Dat Duong, Buhm Han, Eleazar Eskin
Incorporating prior information into association studies. Bioinform. 28 (12) (2012)
Dan He, Buhm Han, Eleazar Eskin
Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data. RECOMB (2012)
Farhad Hormozdiari, Zhanyong Wang, Wen-Yun Yang, Eleazar Eskin
Efficient genotyping of individuals using overlapping pool sequencing and imputation. ACSCC (2012)
Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. RECOMB (2012)
Can Alkan, Emidio Capriotti, Eleazar Eskin, Fereydoun Hormozdiari, Maricel G. Kann
Session Introduction. Pacific Symposium on Biocomputing (2011)
Dan He, Farhad Hormozdiari, Nicholas A. Furlotte, Eleazar Eskin
Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions. Bioinform. 27 (11) (2011)
Dan He, Pratima Kunwar, Eleazar Eskin, Helen Horton, Peter B. Gilbert, Tomer Hertz
Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials. BCB (2011)
Jae Hoon Sul, Buhm Han, Eleazar Eskin
Increasing Power of Groupwise Association Test with Likelihood Ratio Test. RECOMB (2011)
Jae Hoon Sul, Buhm Han, Eleazar Eskin
Increasing Power of Groupwise Association Test with Likelihood Ratio Test. J. Comput. Biol. 18 (11) (2011)
Christopher C. Park, Greg D. Gale, Simone de Jong, Anatole Ghazalpour, Brian J. Bennett, Charles R. Farber, Peter Langfelder, Andy Lin, Arshad H. Khan, Eleazar Eskin, Steve Horvath, Aldons J. Lusis, Roel A. Ophoff, Desmond J. Smith
Gene networks associated with conditional fear in mice identified using a systems genetics approach. BMC Syst. Biol. 5 (2011)
Nicholas A. Furlotte, Hyun Min Kang, Chun Ye, Eleazar Eskin
Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity. Bioinform. 27 (13) (2011)
Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin
Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinform. 12 (S-6) (2011)
Nathaniel Parrish, Farhad Hormozdiari, Eleazar Eskin
Assembly of non-unique insertion content using next-generation sequencing. BMC Bioinform. 12 (S-6) (2011)
Jason L. Stein, Xue Hua, Jonathan H. Morra, Suh Lee, Derrek P. Hibar, April J. Ho, Alex D. Leow, Arthur W. Toga, Jae Hoon Sul, Hyun Min Kang, Eleazar Eskin, Andrew J. Saykin, Li Shen, Tatiana Foroud, Nathan Pankratz, Matthew J. Huentelman, David W. Craig, Jill D. Gerber, April N. Allen, Jason J. Corneveaux, Dietrich A. Stephan, Jennifer Webster, Bryan M. DeChairo, Steven G. Potkin, Clifford R. Jack Jr., Michael W. Weiner, Paul M. Thompson
Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease. NeuroImage 51 (2) (2010)
Roberto Santana, Alexander Mendiburu, Noah Zaitlen, Eleazar Eskin, José Antonio Lozano
Multi-marker tagging single nucleotide polymorphism selection using estimation of distribution algorithms. Artif. Intell. Medicine 50 (3) (2010)
Eun Yong Kang, Ilya Shpitser, Eleazar Eskin
Respecting Markov Equivalence in Computing Posterior Probabilities of Causal Graphical Features. AAAI (2010)
Dan He, Arthur Choi, Knot Pipatsrisawat, Adnan Darwiche, Eleazar Eskin
Optimal algorithms for haplotype assembly from whole-genome sequence data. Bioinform. 26 (12) (2010)
Dan He, Nicholas A. Furlotte, Eleazar Eskin
Detection and reconstruction of tandemly organized de novo copy number variations. BMC Bioinform. 11 (S-11) (2010)
Eun Yong Kang, Chun Ye, Ilya Shpitser, Eleazar Eskin
Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples. J. Comput. Biol. 17 (3) (2010)
Hyun Min Kang, Noah Zaitlen, Eleazar Eskin
EMINIM: An Adaptive and Memory-Efficient Algorithm for Genotype Imputation. J. Comput. Biol. 17 (3) (2010)
Dan He, Eleazar Eskin
Effective Algorithms for Fusion Gene Detection. WABI (2010)
Hyun Min Kang, Noah Zaitlen, Buhm Han, Eleazar Eskin
An Adaptive and Memory Efficient Algorithm for Genotype Imputation. RECOMB (2009)
Chun Ye, Simon J. Galbraith, James C. Liao, Eleazar Eskin
Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast. PLoS Comput. Biol. 5 (3) (2009)
Eun Yong Kang, Ilya Shpitser, Chun Ye, Eleazar Eskin
Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples. RECOMB (2009)
Arthur Choi, Noah Zaitlen, Buhm Han, Knot Pipatsrisawat, Adnan Darwiche, Eleazar Eskin
Efficient Genome Wide Tagging by Reduction to SAT. WABI (2008)
Eleazar Eskin
Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information. RECOMB (2008)
Erik Corona, Benjamin J. Raphael, Eleazar Eskin
Identification of Deletion Polymorphisms from Haplotypes. RECOMB (2007)
Eleazar Eskin, Sagi Snir
Incorporating homologues into Sequence Embeddings for protein Analysis. J. Bioinform. Comput. Biol. 5 (3) (2007)
Chun Ye, Eleazar Eskin
Discovering tightly regulated and differentially expressed gene sets in whole genome expression data. Bioinform. 23 (2) (2007)
Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin
Reconstructing the Phylogeny of Mobile Elements. RECOMB (2007)
Sarah J. Aerni, Eleazar Eskin
10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB). RECOMB (2006)
Sean O'Rourke, Gal Chechik, Robin Friedman, Eleazar Eskin
Discrete profile comparison using information bottleneck. BMC Bioinform. 7 (S-1) (2006)
Eleazar Eskin, Roded Sharan, Eran Halperin
A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions. J. Bioinform. Comput. Biol. 4 (3) (2006)
Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna
Searching Genomes for Noncoding RNA Using FastR. IEEE ACM Trans. Comput. Biol. Bioinform. 2 (4) (2005)
Eleazar Eskin, Sagi Snir
The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space. CIBCB (2005)
Salvatore J. Stolfo, Frank Apap, Eleazar Eskin, Katherine A. Heller, Shlomo Hershkop, Andrew Honig, Krysta M. Svore
A comparative evaluation of two algorithms for Windows Registry Anomaly Detection. J. Comput. Secur. 13 (4) (2005)
Eleazar Eskin, Eugene Agichtein
Combining Text Mining and Sequence Analysis to Discover Protein Functional Regions. Pacific Symposium on Biocomputing (2004)
Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini
Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs. Regulatory Genomics (2004)
Christina S. Leslie, Eleazar Eskin, Adiel Cohen, Jason Weston, William Stafford Noble
Mismatch string kernels for discriminative protein classification. Bioinform. 20 (4) (2004)
Eran Halperin, Eleazar Eskin
Haplotype reconstruction from genotype data using Imperfect Phylogeny. Bioinform. 20 (12) (2004)
Sean O'Rourke, Gal Chechik, Robin Friedman, Eleazar Eskin
Discrete profile alignment via constrained information bottleneck. NIPS (2004)
Eleazar Eskin
From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles. RECOMB (2004)
Alexander J. Smola, Vishy Vishwanathan, Eleazar Eskin
Laplace Propagation. NIPS (2003)
Eleazar Eskin, William Stafford Noble, Yoram Singer
Protein Family Classification Using Sparse Markov Transducers. J. Comput. Biol. 10 (2) (2003)
Eleazar Eskin, Eran Halperin, Richard M. Karp
Large scale reconstruction of haplotypes from genotype data. RECOMB (2003)
Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner
Genome-Wide Analysis of Bacterial Promoter Regions. Pacific Symposium on Biocomputing (2003)
Christina S. Leslie, Eleazar Eskin, William Stafford Noble
The Spectrum Kernel: A String Kernel for SVM Protein Classification. Pacific Symposium on Biocomputing (2002)
Bernhard Schölkopf, Jason Weston, Eleazar Eskin, Christina S. Leslie, William Stafford Noble
A Kernel Approach for Learning from Almost Orthogonal Patterns. PKDD (2002)
Eleazar Eskin, William Stafford Noble, Yoram Singer
Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences. J. Comput. Biol. 9 (6) (2002)
Christina S. Leslie, Eleazar Eskin, Jason Weston, William Stafford Noble
Mismatch String Kernels for SVM Protein Classification. NIPS (2002)

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Publication Activity (10 Years)

Top Topics

Top Venues

Eleazar Eskin