Sergey Knyazev

Publication Activity (10 Years)

Years Active: 2014-2021
Publications (10 Years): 12

Top Topics

Granger Causality

Severe Acute Respiratory Syndrome

Top Venues

J. Comput. Biol.

Briefings Bioinform.

Publications

Ellsworth M. Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, Sergey Knyazev, Roxana Cintron, William M. Switzer
MicrobeTrace: Retooling molecular epidemiology for rapid public health response. PLoS Comput. Biol. 17 (9) (2021)
Daniel Novikov, Sergey Knyazev, Mark Grinshpon, Pelin B. Icer, Pavel Skums, Alex Zelikovsky
Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations. J. Comput. Biol. 28 (11) (2021)
Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson
From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering. J. Comput. Biol. 28 (11) (2021)
Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. J. Comput. Biol. 28 (8) (2021)
Sergey Knyazev, Daniel Novikov, Mark Grinshpon, Harman Singh, Ram Ayyala, Varuni Sarwal, Roya Hosseini, Pelin Icer Baykal, Pavel Skums, Ellsworth Campbell, Serghei Mangul, Alex Zelikovsky
A Novel Network Representation of SARS-CoV-2 Sequencing Data. ISBRA (2021)
Sergey Knyazev, Lauren Hughes, Pavel Skums, Alexander Zelikovsky
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era. Briefings Bioinform. 22 (1) (2021)
Filipp Rondel, Akram Sadat Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data. ISBRA (2020)
Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson
Clustering Based Identification of SARS-CoV-2 Subtypes. ICCABS (2020)
Keith Mitchell, Jaqueline J. Brito, Igor Mandric, Qiaozhen Wu, Sergey Knyazev, Sei Chang, Lana S. Martin, Aaron Karlsberg, Ekaterina Gerasimov, Russell Littman, Brian L. Hill, Nicholas C. Wu, Harry (Taegyun) Yang, Kevin Hsieh, Linus Chen, Eli Littman, Taylor Shabani, German Enik, Douglas Yao, Ren Sun, Jan Schroeder, Eleazar Eskin, Alex Zelikovsky, Pavel Skums, Mihai Pop, Serghei Mangul
Benchmarking of computational error-correction methods for next-generation sequencing data. BCB (2020)
Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinform. 34 (1) (2018)
Igor Mandric, Sergey Knyazev, Alex Zelikovsky
Repeat-aware evaluation of scaffolding tools. Bioinform. 34 (15) (2018)
Igor Mandric, Sergey Knyazev, Cory Padilla, Frank Stewart, Ion I. Mandoiu, Alex Zelikovsky
Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities. ISBRA (2017)
Maxim Buzdalov, Sergey Knyazev, Yuri Porozov
Protein Conformation Motion Modeling Using Sep-CMA-ES. ICMLA (2014)
Sergey Knyazev, Sergey Tarakanov, Vladimir Kuznetsov, Yuri Porozov, Yevgeni Koucheryavy, Eugene O. Stepanov
Coarse-grained model of protein interaction for bio-inspired nano-communication. ICUMT (2014)