Bogdan Pasaniuc

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 14

Top Topics

Summary Statistics

Top Venues

PLoS Comput. Biol.

J. Comput. Biol.

Publications

Xinran Wang, Zeyun Lu, Arjun Bhattacharya, Bogdan Pasaniuc, Nicholas Mancuso
twas_sim, a Python-based tool for simulation and power analysis of transcriptome-wide association analysis. Bioinform. 39 (5) (2023)
Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman
Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits. PLoS Comput. Biol. 17 (10) (2021)
Arunabha Majumdar, Claudia Giambartolomei, Na Cai, Tanushree Haldar, Tommer Schwarz, Michael Gandal, Jonathan Flint, Bogdan Pasaniuc
Leveraging eQTLs to identify individual-level tissue of interest for a complex trait. PLoS Comput. Biol. 17 (5) (2021)
Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. J. Comput. Biol. 28 (8) (2021)
Kritika Singh, Gita Pathak, Tyne Miller-Flemming, Frank Wendt, Nava Ehsan, Kangcheng Hou, Ruth Johnson, Zeyun Lu, Shyamalika Gopalan, Loic Yang, Pejman Mohammadi, Bogdan Pasaniuc, Renato Polimanti, Lea Davis, Nicholas Mancuso
Integrative Analyses Identify Susceptibility Genes Underlying COVID-19 Hospitalization. AMIA (2021)
Arunabha Majumdar, Kathryn S. Burch, Tanushree Haldar, Sriram Sankararaman, Bogdan Pasaniuc, W. James Gauderman, John S. Witte
A two-step approach to testing overall effect of gene-environment interaction for multiple phenotypes. Bioinform. 36 (24) (2021)
Filipp Rondel, Akram Sadat Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data. ISBRA (2020)
Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman
A Scalable Method for Estimating the Regional Polygenicity of Complex Traits. RECOMB (2020)
Ali Pazokitoroudi, Yue Wu, Kathryn S. Burch, Kangcheng Hou, Bogdan Pasaniuc, Sriram Sankararaman
Scalable Multi-component Linear Mixed Models with Application to SNP Heritability Estimation. RECOMB (2019)
Hanna Julienne, Huwenbo Shi, Bogdan Pasaniuc, Hugues Aschard
RAISS: robust and accurate imputation from summary statistics. Bioinform. 35 (22) (2019)
Ruth Johnson, Huwenbo Shi, Bogdan Pasaniuc, Sriram Sankararaman
A unifying framework for joint trait analysis under a non-infinitesimal model. Bioinform. 34 (13) (2018)
Claudia Giambartolomei, Jimmy Zhenli Liu, Wen Zhang, Mads Hauberg, Huwenbo Shi, James Boocock, Joe Pickrell, Andrew E. Jaffe, The CommonMind Consortium, Bogdan Pasaniuc, Panos Roussos
A Bayesian framework for multiple trait colocalization from summary association statistics. Bioinform. 34 (15) (2018)
Gleb Kichaev, Megan Roytman, Ruth Johnson, Eleazar Eskin, Sara Lindström, Peter Kraft, Bogdan Pasaniuc
Improved methods for multi-trait fine mapping of pleiotropic risk loci. Bioinform. 33 (2) (2017)
Robert Brown, Gleb Kichaev, Nicholas Mancuso, James Boocock, Bogdan Pasaniuc
Enhanced methods to detect haplotypic effects on gene expression. Bioinform. 33 (15) (2017)
Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc
A Spatial Haplotype Copying Model with Applications to Genotype Imputation. J. Comput. Biol. 22 (5) (2015)
Farhad Hormozdiari, Gleb Kichaev, Wen-Yun Yang, Bogdan Pasaniuc, Eleazar Eskin
Identification of causal genes for complex traits. Bioinform. 31 (12) (2015)
Huwenbo Shi, Bogdan Pasaniuc, Kenneth L. Lange
A multivariate Bernoulli model to predict DNaseI hypersensitivity status from haplotype data. Bioinform. 31 (21) (2015)
Robert Brown, Bogdan Pasaniuc
Enhanced Methods for Local Ancestry Assignment in Sequenced Admixed Individuals. PLoS Comput. Biol. 10 (4) (2014)
Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc
A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. RECOMB (2014)
Bogdan Pasaniuc, Noah Zaitlen, Huwenbo Shi, Gaurav Bhatia, Alexander Gusev, Joseph Pickrell, Joel Hirschhorn, David P. Strachan, Nick Patterson, Alkes L. Price
Fast and accurate imputation of summary statistics enhances evidence of functional enrichment. Bioinform. 30 (20) (2014)
Farhad Hormozdiari, Emrah Kostem, Eun Yong Kang, Bogdan Pasaniuc, Eleazar Eskin
Identifying causal variants at loci with multiple signals of association. BCB (2014)
Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He, Bogdan Pasaniuc, Eleazar Eskin
Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinform. 29 (18) (2013)
Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian E. Henderson, David Reich, Christopher A. Haiman, Esteban Gonzàlez Burchard, Eran Halperin
Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinform. 29 (11) (2013)
Noah Zaitlen, Bogdan Pasaniuc, Nick Patterson, Samuela Pollack, Benjamin Voight, Leif Groop, David Altshuler, Brian E. Henderson, Laurence N. Kolonel, Loic Le Marchand, Kevin Waters, Christopher A. Haiman, Barbara E. Stranger, Emmanouil T. Dermitzakis, Peter Kraft, Alkes L. Price
Analysis of case-control association studies with known risk variants. Bioinform. 28 (13) (2012)
Yael Baran, Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Esteban Gonzàlez Burchard, Eran Halperin
Fast and accurate inference of local ancestry in Latino populations. Bioinform. 28 (10) (2012)
Bogdan Pasaniuc, Robert S. Garfinkel, Ion I. Mandoiu, Alexander Zelikovsky
Optimal Testing of Digital Microfluidic Biochips. INFORMS J. Comput. 23 (4) (2011)
Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. J. Comput. Biol. 18 (3) (2011)
Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin
Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinform. 12 (S-6) (2011)
Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. RECOMB (2010)
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
GEDI: Scalable Algorithms for Genotype Error Detection and Imputation CoRR (2009)
Bogdan Pasaniuc, Justin Kennedy, Ion I. Mandoiu
Imputation-Based Local Ancestry Inference in Admixed Populations. ISBRA (2009)
Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin
Inference of locus-specific ancestry in closely related populations. Bioinform. 25 (12) (2009)
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. J. Comput. Biol. 15 (9) (2008)
Alexander Gusev, Ion I. Mandoiu, Bogdan Pasaniuc
Highly Scalable Genotype Phasing by Entropy Minimization. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (2) (2008)
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. WABI (2007)
Bogdan Pasaniuc, Ion I. Mandoiu
Highly Scalable Genotype Phasing by Entropy Minimization. EMBC (2006)