Dan He

Publication Activity (10 Years)

Years Active: 2010-2018
Publications (10 Years): 10

Top Venues

Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Comput. Biol.

CoRR

University of California, Los Angeles, USA (PHD)

Education History

University of California, Los Angeles, USA

PHD

Publications

Dan He, Subrata Saha, Richard Finkers, Laxmi Parida
Efficient algorithms for polyploid haplotype phasing. BMC Genom. 19 (S2) (2018)
Dan He, Zhanyong Wang, Laxmi Parida, Eleazar Eskin
IPED2: Inheritance Path Based Pedigree Reconstruction Algorithm for Complicated Pedigrees. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Dan He, Laxmi Parida
MUSE: A Multi-locus Sampling-based Epistasis Algorithm for Quantitative Genetic Trait Prediction. PSB (2017)
Dan He, Laxmi Parida
Does encoding matter? A novel view on the quantitative genetic trait prediction problem. BMC Bioinform. 17 (S-9) (2016)
Dan He, David Kuhn, Laxmi Parida
Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction. Bioinform. 32 (12) (2016)
Dan He, Irina Rish, David Haws, Laxmi Parida
MINT: Mutual Information Based Transductive Feature Selection for Genetic Trait Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (3) (2016)
Dan He, Zhanyong Wang, Laxmi Parida
MINED: An Efficient Mutual Information Based Epistasis Detection Method to Improve Quantitative Genetic Trait Prediction. ISBRA (2015)
Dan He, Laxmi Parida
Does encoding matter? A novel view on the quantitative genetic trait prediction problem. BIBM (2015)
Oyetunji E. Ogundijo, Dan He, Laxmi Parida
Performance evaluation of different encoding strategies for quantitative genetic trait prediction. ICCABS (2015)
Dan He, Laxmi Parida
SAME: a sampling-based multi-locus epistasis algorithm for quantitative genetic trait prediction. BCB (2015)
Dan He, Irina Rish, Laxmi Parida
Transductive HSIC Lasso. SDM (2014)
Dan He, Zhanyong Wang, Laxmi Parida, Eleazar Eskin
IPED2: inheritance path based pedigree reconstruction algorithm for complicated pedigrees. BCB (2014)
Dan He, Zhanyong Wang, Laxmi Parida, Eleazar Eskin
IPED2: Inheritance Path based Pedigree Reconstruction Algorithm for Complicated Pedigrees. CoRR (2014)
Dan He, Eleazar Eskin
IPED2X: A robust pedigree reconstruction algorithm for complicated pedigrees. J. Bioinform. Comput. Biol. 12 (6) (2014)
Dan He, Eleazar Eskin
IPEDX: An exact algorithm for pedigree reconstruction using genotype data. BIBM (2013)
Dan He, Buhm Han, Eleazar Eskin
Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data. J. Comput. Biol. 20 (2) (2013)
Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin
IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data. RECOMB (2013)
Dan He, Irina Rish, David Haws, Simon Teyssedre, Zivan Karaman, Laxmi Parida
MINT: Mutual Information based Transductive Feature Selection for Genetic Trait Prediction. CoRR (2013)
Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He, Bogdan Pasaniuc, Eleazar Eskin
Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinform. 29 (18) (2013)
Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin
IPED: Inheritance Path-based Pedigree Reconstruction Algorithm Using Genotype Data. J. Comput. Biol. 20 (10) (2013)
Dan He, Buhm Han, Eleazar Eskin
Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data. RECOMB (2012)
Dan He, Farhad Hormozdiari, Nicholas A. Furlotte, Eleazar Eskin
Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions. Bioinform. 27 (11) (2011)
Dan He, Pratima Kunwar, Eleazar Eskin, Helen Horton, Peter B. Gilbert, Tomer Hertz
Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials. BCB (2011)
Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin
Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinform. 12 (S-6) (2011)
Dan He, Arthur Choi, Knot Pipatsrisawat, Adnan Darwiche, Eleazar Eskin
Optimal algorithms for haplotype assembly from whole-genome sequence data. Bioinform. 26 (12) (2010)
Dan He, Nicholas A. Furlotte, Eleazar Eskin
Detection and reconstruction of tandemly organized de novo copy number variations. BMC Bioinform. 11 (S-11) (2010)
Dan He, Eleazar Eskin
Effective Algorithms for Fusion Gene Detection. WABI (2010)

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Publication Activity (10 Years)

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Dan He