Eran Halperin

Publication Activity (10 Years)

Years Active: 1998-2024
Publications (10 Years): 23

Top Topics

Collecting Data

Top Venues

PLoS Comput. Biol.

Publications

Zixiang Chen, Jun Han, Yongqian Li, Yiwen Kou, Eran Halperin, Robert E. Tillman, Quanquan Gu
Guided Discrete Diffusion for Electronic Health Record Generation. CoRR (2024)
Brunilda Balliu, Chris Douglas, Darsol Seok, Liat Shenhav, Yue Wu, Doxa Chatzopoulou, William Kaiser, Victor Chen, Jennifer Kim, Sandeep Deverasetty, Inna Arnaudova, Robert Gibbons, Eliza Congdon, Michelle G. Craske, Nelson B. Freimer, Eran Halperin, Sriram Sankararaman, Jonathan Flint
Personalized mood prediction from patterns of behavior collected with smartphones. npj Digit. Medicine 7 (1) (2024)
Kailas Vodrahalli, Gregory D. Lyng, Brian L. Hill, Kimmo Kärkkäinen, Jeffrey Hertzberg, James Zou, Eran Halperin
Understanding and Predicting the Effect of Environmental Factors on People with Type 2 Diabetes. CHIL (2023)
Kevin Wu, Dominik Dahlem, Christopher Hane, Eran Halperin, James Zou
Collecting data when missingness is unknown: a method for improving model performance given under-reporting in patient populations. CHIL (2023)
Joel Stremmel, Ardavan Saeedi, Hamid Hassanzadeh, Sanjit S. Batra, Jeffrey Hertzberg, Jaime Murillo, Eran Halperin
XAIQA: Explainer-Based Data Augmentation for Extractive Question Answering. CoRR (2023)
Zhichao Yang, Sanjit Singh Batra, Joel Stremmel, Eran Halperin
Surpassing GPT-4 Medical Coding with a Two-Stage Approach. CoRR (2023)
Joel Stremmel, Brian L. Hill, Jeffrey Hertzberg, Jaime Murillo, Llewelyn Allotey, Eran Halperin
Extend and Explain: Interpreting Very Long Language Models. CoRR (2022)
Joel Stremmel, Brian L. Hill, Jeffrey Hertzberg, Jaime Murillo, Llewelyn Allotey, Eran Halperin
Extend and Explain: Interpreting Very Long Language Models. ML4H@NeurIPS (2022)
Leah Briscoe, Brunilda Balliu, Sriram Sankararaman, Eran Halperin, Nandita R. Garud
Evaluating supervised and unsupervised background noise correction in human gut microbiome data. PLoS Comput. Biol. 18 (2) (2022)
Béatrice S. Hasler, Daniel H. Landau, Yossi Hasson, Noa Schori-Eyal, Jonathan Giron, Jonathan Levy, Eran Halperin, Doron Friedman
Virtual reality-based conflict resolution: The impact of immersive 360° video on changing view points and moral judgment in the context of violent intergroup conflict. New Media Soc. 23 (8) (2021)
Nadav Rakocz, Jeffrey N. Chiang, Muneeswar G. Nittala, Giulia Corradetti, Liran Tiosano, Swetha Velaga, Michael Thompson, Brian L. Hill, Sriram Sankararaman, Jonathan L. Haines, Margaret A. Pericak-Vance, Dwight Stambolian, Srinivas R. Sadda, Eran Halperin
Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging. npj Digit. Medicine 4 (2021)
Elior Rahmani, Brandon Jew, Eran Halperin
The Effect of Model Directionality on Cell-Type-Specific Differential DNA Methylation Analysis. Frontiers Bioinform. 1 (2021)
Tyler A. Joseph, Liat Shenhav, João B. Xavier, Eran Halperin, Itsik Pe'er
Compositional Lotka-Volterra describes microbial dynamics in the simplex. PLoS Comput. Biol. 16 (5) (2020)
Mike Thompson, Zeyuan Johnson Chen, Elior Rahmani, Eran Halperin
Distinguishing Biological from Technical Sources of Variation Using a Combination of Methylation Datasets. RECOMB (2019)
Liat Shenhav, Ori Furman, Leah Briscoe, Mike Thompson, Justin D. Silverman, Itzhak Mizrahi, Eran Halperin
Modeling the temporal dynamics of the gut microbial community in adults and infants. PLoS Comput. Biol. 15 (6) (2019)
Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin
Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. J. Comput. Biol. 25 (7) (2018)
Roye Rozov, Gil Goldshlager, Eran Halperin, Ron Shamir
Faucet: streaming de novo assembly graph construction. Bioinform. 34 (1) (2018)
Elior Rahmani, Regev Schweiger, Saharon Rosset, Sriram Sankararaman, Eran Halperin
Tensor Composition Analysis Detects Cell-Type Specific Associations in Epigenetic Studies. RECOMB (2018)
Omer Weissbrod, Elior Rahmani, Regev Schweiger, Saharon Rosset, Eran Halperin
Association testing of bisulfite-sequencing methylation data via a Laplace approximation. Bioinform. 33 (14) (2017)
Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin
Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. RECOMB (2017)
Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, Ron Shamir
Recycler: an algorithm for detecting plasmids from de novo assembly graphs. Bioinform. 33 (4) (2017)
Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin, Eran Halperin
A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference. RECOMB (2017)
Elior Rahmani, Reut Yedidim, Liat Shenhav, Regev Schweiger, Omer Weissbrod, Noah Zaitlen, Eran Halperin
GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. Bioinform. 33 (12) (2017)
James Y. Zou, Eran Halperin, Esteban Gonzàlez Burchard, Sriram Sankararaman
Inferring parental genomic ancestries using pooled semi-Markov processes. Bioinform. 31 (12) (2015)
Yaron Margalit, Yael Baran, Eran Halperin
Multiple-Ancestor Localization for Recently Admixed Individuals. WABI (2015)
Yael Baran, Eran Halperin
A Note on the Relations Between Spatio-Genetic Models. J. Comput. Biol. 22 (10) (2015)
Roye Rozov, Ron Shamir, Eran Halperin
Fast lossless compression via cascading Bloom filters. BMC Bioinform. 15 (S-9) (2014)
Ya'ara Arkin, Elior Rahmani, Marcus E. Kleber, Reijo Laaksonen, Winfried März, Eran Halperin
EPIQ - efficient detection of SNP-SNP epistatic interactions for quantitative traits. Bioinform. 30 (12) (2014)
Doron Shem-Tov, Eran Halperin
Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE). PLoS Comput. Biol. 10 (6) (2014)
Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. J. Comput. Biol. 20 (3) (2013)
Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Christine F. Skibola, Eleazar Eskin, Eran Halperin
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. J. Comput. Biol. 20 (11) (2013)
Roy Ronen, Nitin Udpa, Eran Halperin, Vineet Bafna
Learning Natural Selection from the Site Frequency Spectrum. RECOMB (2013)
Armin Töpfer, Osvaldo Zagordi, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel
Probabilistic Inference of Viral Quasispecies Subject to Recombination. J. Comput. Biol. 20 (2) (2013)
Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian E. Henderson, David Reich, Christopher A. Haiman, Esteban Gonzàlez Burchard, Eran Halperin
Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinform. 29 (11) (2013)
Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Chris Skibola, Eleazar Eskin, Eran Halperin
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. RECOMB (2013)
Osvaldo Zagordi, Armin Töpfer, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel
Probabilistic Inference of Viral Quasispecies Subject to Recombination. RECOMB (2012)
Yael Baran, Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Esteban Gonzàlez Burchard, Eran Halperin
Fast and accurate inference of local ancestry in Latino populations. Bioinform. 28 (10) (2012)
Anatoly Efros, Eran Halperin
Haplotype reconstruction using perfect phylogeny and sequence data. BMC Bioinform. 13 (S-6) (2012)
Roye Rozov, Eran Halperin, Ron Shamir
MGMR: leveraging RNA-Seq population data to optimize expression estimation. BMC Bioinform. 13 (S-6) (2012)
Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. RECOMB (2012)
Yael Baran, Eran Halperin
Joint Analysis of Multiple Metagenomic Samples. PLoS Comput. Biol. 8 (2) (2012)
Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin
Pedigree Reconstruction Using Identity by Descent. RECOMB (2011)
Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. J. Comput. Biol. 18 (3) (2011)
Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin
Pedigree Reconstruction Using Identity by Descent. J. Comput. Biol. 18 (11) (2011)
Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin
Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinform. 12 (S-6) (2011)
Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. RECOMB (2010)
Roy Ronen, Ido Gan, Shira Modai, Alona Sukacheov, Gideon Dror, Eran Halperin, Noam Shomron
miRNAkey: a software for microRNA deep sequencing analysis. Bioinform. 26 (20) (2010)
Bonnie Kirkpatrick, Eran Halperin, Richard M. Karp
Haplotype Inference in Complex Pedigrees. J. Comput. Biol. 17 (3) (2010)
Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp
Haplotype Inference in Complex Pedigrees. RECOMB (2009)
Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin
Inference of locus-specific ancestry in closely related populations. Bioinform. 25 (12) (2009)
Ofir Davidovich, Eran Halperin, Gad Kimmel, Ron Shamir
Increasing the Power of Association Studies by Imputation-based Sparse Tag SNP Selection. Commun. Inf. Syst. 9 (3) (2009)
Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan
On the Inference of Ancestries in Admixed Populations. RECOMB (2008)
Srinath Sridhar, Satish Rao, Eran Halperin
An Efficient and Accurate Graph-Based Approach to Detect Population Substructure. RECOMB (2007)
Eran Halperin, Guy Kortsarz, Robert Krauthgamer, Aravind Srinivasan, Nan Wang
Integrality Ratio for Group Steiner Trees and Directed Steiner Trees. SIAM J. Comput. 36 (5) (2007)
Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz
Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (4) (2007)
Bonnie Kirkpatrick, Carlos Santos Armendariz, Richard M. Karp, Eran Halperin
HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling. Bioinform. 23 (22) (2007)
Kamalika Chaudhuri, Eran Halperin, Satish Rao, Shuheng Zhou
A rigorous analysis of population stratification with limited data. SODA (2007)
Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz
Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees. International Conference on Computational Science (2) (2006)
Rajiv Gandhi, Eran Halperin, Samir Khuller, Guy Kortsarz, Aravind Srinivasan
An improved approximation algorithm for vertex cover with hard capacities. J. Comput. Syst. Sci. 72 (1) (2006)
Eran Halperin
SNP and Haplotype Analysis - Algorithms and Applications. CPM (2006)
Eleazar Eskin, Roded Sharan, Eran Halperin
A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions. J. Bioinform. Comput. Biol. 4 (3) (2006)
Guy E. Blelloch, Kedar Dhamdhere, Eran Halperin, R. Ravi, Russell Schwartz, Srinath Sridhar
Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction. ICALP (1) (2006)
Eran Halperin, Elad Hazan
HAPLOFREQ-Estimating Haplotype Frequencies Efficiently. J. Comput. Biol. 13 (2) (2006)
Edith Cohen, Eran Halperin, Haim Kaplan
Performance aspects of distributed caches using TTL-based consistency. Theor. Comput. Sci. 331 (1) (2005)
Eran Halperin, Gad Kimmel, Ron Shamir
Tag SNP selection in genotype data for maximizing SNP prediction accuracy. ISMB (Supplement of Bioinformatics) (2005)
Eran Halperin, Richard M. Karp
The minimum-entropy set cover problem. Theor. Comput. Sci. 348 (2-3) (2005)
Julia Chuzhoy, Sudipto Guha, Eran Halperin, Sanjeev Khanna, Guy Kortsarz, Robert Krauthgamer, Joseph Naor
-hard to approximate. J. ACM 52 (4) (2005)
Eran Halperin, Elad Hazan
HAPLOFREQ - Estimating Haplotype Frequencies E.ciently. RECOMB (2005)
Eran Halperin, Dror Livnat, Uri Zwick
MAX CUT in cubic graphs. J. Algorithms 53 (2) (2004)
Eran Halperin, Richard M. Karp
Perfect phylogeny and haplotype assignment. RECOMB (2004)
Eran Halperin, Eleazar Eskin
Haplotype reconstruction from genotype data using Imperfect Phylogeny. Bioinform. 20 (12) (2004)
Julia Chuzhoy, Sudipto Guha, Eran Halperin, Sanjeev Khanna, Guy Kortsarz, Joseph Naor
-hard to approximate. STOC (2004)
Eran Halperin, Richard M. Karp
The Minimum-Entropy Set Cover Problem. ICALP (2004)
Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir
Handling Long Targets and Errors in Sequencing by Hybridization. J. Comput. Biol. 10 (3/4) (2003)
Eran Halperin, Guy Kortsarz, Robert Krauthgamer
Tight lower bounds for the asymmetric k-center problem Electron. Colloquium Comput. Complex. 10 (035) (2003)
Eran Halperin, Robert Krauthgamer
Polylogarithmic inapproximability. STOC (2003)
Eran Halperin, Guy Kortsarz, Robert Krauthgamer, Aravind Srinivasan, Nan Wang
Integrality ratio for group Steiner trees and directed steiner trees. SODA (2003)
Eleazar Eskin, Eran Halperin, Richard M. Karp
Large scale reconstruction of haplotypes from genotype data. RECOMB (2003)
Micah Adler, Eran Halperin, Richard M. Karp, Vijay V. Vazirani
A stochastic process on the hypercube with applications to peer-to-peer networks. STOC (2003)
Edith Cohen, Eran Halperin, Haim Kaplan, Uri Zwick
Reachability and Distance Queries via 2-Hop Labels. SIAM J. Comput. 32 (5) (2003)
Rajiv Gandhi, Eran Halperin, Samir Khuller, Guy Kortsarz, Aravind Srinivasan
An Improved Approximation Algorithm for Vertex Cover with Hard Capacities. ICALP (2003)
Eran Halperin, Jeremy Buhler, Richard M. Karp, Robert Krauthgamer, Ben Westover
Detecting protein sequence conservation via metric embeddings. ISMB (Supplement of Bioinformatics) (2003)
Eran Halperin, Dror Livnat, Uri Zwick
MAX CUT in cubic graphs. SODA (2002)
Eran Halperin
Improved Approximation Algorithms for the Vertex Cover Problem in Graphs and Hypergraphs. SIAM J. Comput. 31 (5) (2002)
Eran Halperin, Uri Zwick
A unified framework for obtaining improved approximation algorithms for maximum graph bisection problems. Random Struct. Algorithms 20 (3) (2002)
Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir
Handling long targets and errors in sequencing by hybridization. RECOMB (2002)
Edith Cohen, Eran Halperin, Haim Kaplan, Uri Zwick
Reachability and distance queries via 2-hop labels. SODA (2002)
Eran Halperin, Ram Nathaniel, Uri Zwick
Coloring k-colorable graphs using relatively small palettes. J. Algorithms 45 (1) (2002)
Eran Halperin, Aravind Srinivasan
Improved Approximation Algorithms for the Partial Vertex Cover Problem. APPROX (2002)
Eran Halperin, Ram Nathaniel, Uri Zwick
Coloring k-colorable graphs using relatively small palettes CoRR (2001)
Eran Halperin, Ram Nathaniel, Uri Zwick
Coloring k-colorable graphs using smaller palettes. SODA (2001)
Eran Halperin, Uri Zwick
Combinatorial approximation algorithms for the maximum directed cut problem. SODA (2001)
Edith Cohen, Eran Halperin, Haim Kaplan
Performance Aspects of Distributed Caches Using TTL-Based Consistency. ICALP (2001)
Eran Halperin, Uri Zwick
Approximation Algorithms for MAX 4-SAT and Rounding Procedures for Semidefinite Programs. J. Algorithms 40 (2) (2001)
Eran Halperin, Uri Zwick
A Unified Framework for Obtaining Improved Approximation Algorithms for Maximum Graph Bisection Problems. IPCO (2001)
Eran Halperin
Improved approximation algorithms for the vertex cover problem in graphs and hypergraphs. SODA (2000)
Eran Halperin, Simchon Faigler, Raveh Gill-More
FramePlus: aligning DNA to protein sequences. Bioinform. 15 (11) (1999)
Eran Halperin, Uri Zwick
Approximation Algorithms for MAX 4-SAT and Rounding Procedures for Semidefinite Programs. IPCO (1999)
Noga Alon, Eran Halperin
Bipartite subgraphs of integer weighted graphs. Discret. Math. 181 (1-3) (1998)