Recycler: an algorithm for detecting plasmids from de novo assembly graphs.
Roye RozovAya Brown KavDavid BogumilNaama ShterzerEran HalperinItzhak MizrahiRon ShamirPublished in: Bioinform. (2017)
Keyphrases
- experimental evaluation
- detection algorithm
- k means
- optimal solution
- preprocessing
- learning algorithm
- times faster
- objective function
- significant improvement
- high accuracy
- recognition algorithm
- computational complexity
- matching algorithm
- convergence rate
- social networks
- graph isomorphism
- subgraph isomorphism
- graph partitioning
- graph structure
- genetic algorithm
- segmentation algorithm
- expectation maximization
- image sequences
- lower bound
- search algorithm