Jonathan L. Haines

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 8

Top Topics

Correlation Analysis

High Throughput Technologies

Top Venues

EvoApplications

Publications

Nadav Rakocz, Jeffrey N. Chiang, Muneeswar G. Nittala, Giulia Corradetti, Liran Tiosano, Swetha Velaga, Michael Thompson, Brian L. Hill, Sriram Sankararaman, Jonathan L. Haines, Margaret A. Pericak-Vance, Dwight Stambolian, Srinivas R. Sadda, Eran Halperin
Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging. npj Digit. Medicine 4 (2021)
Nicholas R. Wheeler, Penelope Benchek, Brian W. Kunkle, Kara L. Hamilton-Nelson, MikeWarfe, Jeremy R. Fondran, Jonathan L. Haines, William S. Bush
Hadoop and PySpark for Reproducibility and Scalability of Genomic Sequencing Studies. PSB (2020)
Mariusz Butkiewicz, Elizabeth E. Blue, Yuk Yee Leung, Xueqiu Jian, Edoardo Marcora, Alan E. Renton, Amanda Kuzma, Li-San Wang, Daniel C. Koboldt, Jonathan L. Haines, William S. Bush
Functional annotation of genomic variants in studies of late-onset Alzheimer's disease. Bioinform. 34 (16) (2018)
Mariusz Butkiewicz, Jonathan L. Haines, William S. Bush
Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants. Bioinform. 33 (10) (2017)
Mariusz Butkiewicz, Jessica Cooke Bailey, Alex T. Frase, Scott M. Dudek, Brian L. Yaspan, Marylyn D. Ritchie, Sarah A. Pendergrass, Jonathan L. Haines
Pathway analysis by randomization incorporating structure - PARIS: an update. Bioinform. 32 (15) (2016)
Jingchao Ni, Mehmet Koyutürk, Hanghang Tong, Jonathan L. Haines, Rong Xu, Xiang Zhang
Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model. BMC Bioinform. 17 (2016)
Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. J. Am. Medical Informatics Assoc. 23 (6) (2016)
Mariusz Butkiewicz, Nicole A. Restrepo, Jonathan L. Haines, Dana C. Crawford
Drug-drug Interaction Profiles of Medication Regimens Extracted from a De-identified Electronic Medical Records System. CRI (2016)
Nicole A. Restrepo, Sabrina L. Mitchell, Robert J. Goodloe, Deborah G. Murdock, Jonathan L. Haines, Dana C. Crawford
Mitochondrial Variation and the Risk of Age-Related Macular Degeneration Across Diverse Populations. Pacific Symposium on Biocomputing (2015)
Jacob B. Hall, Jessica Cooke Bailey, Joshua Hoffman, Margaret A. Pericak-Vance, William K. Scott, Jaclyn Kovach, Stephen G. Schwartz, Anita Agarwal, Milam Brantley, Jonathan L. Haines, William S. Bush
Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models. BMC Bioinform. 16 (2015)
William S. Bush, Jonathan L. Haines
Genotype Correlation Analysis Reveals Pathway-Based Functional Disequilibrium and Potential Epistasis in the Human Interactome. EvoApplications (2014)
Raymond Heatherly, Joshua C. Denny, Jonathan L. Haines, Dan M. Roden, Bradley A. Malin
Size matters: How population size influences genotype-phenotype association studies in anonymized data. J. Biomed. Informatics 52 (2014)
Joshua Pruitt, Peter Speltz, Jacqueline Kirby, Melissa A. Basford, Jonathan L. Haines, Joshua C. Denny
PheKB.org: An Online Collaboration Tool for Phenotype Algorithm Research. AMIA (2012)
Tricia A. Thornton-Wells, Jason H. Moore, Jonathan L. Haines
Dissecting trait heterogeneity: a comparison of three clustering methods applied to genotypic data. BMC Bioinform. 7 (2006)
Yi-Ju Li, Puting Xu, Xuejun Qin, Donald E. Schmechel, Christine M. Hulette, Jonathan L. Haines, Margaret A. Pericak-Vance, John R. Gilbert
A comparative analysis of the information content in long and short SAGE libraries. BMC Bioinform. 7 (2006)