David S. Carrell

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 21

Top Topics

Natural Language Processing

Single Nucleotide Polymorphisms

Electronic Health Records

Top Venues

J. Am. Medical Informatics Assoc.

BMC Medical Informatics Decis. Mak.

J. Biomed. Informatics

Publications

Joshua C. Smith, Brian D. Williamson, David J. Cronkite, Daniel Park, Jill M. Whitaker, Michael F. McLemore, Joshua Osmanski, Robert Winter, Arvind Ramaprasan, Ann Kelley, Mary Shea, Saranrat Wittayanukorn, Danijela Stojanovic, Yueqin Zhao, Sengwee Toh, Kevin B. Johnson, David Aronoff, David S. Carrell
Data-driven automated classification algorithms for acute health conditions: applying PheNorm to COVID-19 disease. J. Am. Medical Informatics Assoc. 31 (3) (2024)
David S. Carrell, James S. Floyd, Susan Gruber, Brian L. Hazlehurst, Patrick J. Heagerty, Jennifer C. Nelson, Brian D. Williamson, Robert Ball
A general framework for developing computable clinical phenotype algorithms. J. Am. Medical Informatics Assoc. 31 (8) (2024)
Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen
Characterizing variability of electronic health record-driven phenotype definitions. J. Am. Medical Informatics Assoc. 30 (3) (2023)
Robert B. Penfold, David S. Carrell, David J. Cronkite, Chester Pabiniak, Tammy Dodd, Ashley M. H. Glass, Eric Johnson, Ella Thompson, H. Michael Arrighi, Paul E. Stang
Development of a machine learning model to predict mild cognitive impairment using natural language processing in the absence of screening. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen
Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Ning Shang, Atlas Khan, Fernanda Polubriaginof, Francesca Zanoni, Karla Mehl, David Fasel, Paul E. Drawz, Robert J. Carrol, Joshua C. Denny, Matthew A. Hathcock, Adelaide M. Arruda-Olson, Peggy L. Peissig, Richard A. Dart, Murray H. Brilliant, Eric B. Larson, David S. Carrell, Sarah A. Pendergrass, Shefali Setia Verma, Marylyn D. Ritchie, Barbara Benoit, Vivian S. Gainer, Elizabeth W. Karlson, Adam S. Gordon, Gail P. Jarvik, Ian B. Stanaway, David R. Crosslin, Sumit Mohan, Iuliana Ionita-Laza, Nicholas P. Tatonetti, Ali G. Gharavi, George Hripcsak, Chunhua Weng, Krzysztof Kiryluk
Medical records-based chronic kidney disease phenotype for clinical care and "big data" observational and genetic studies. npj Digit. Medicine 4 (2021)
Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei
Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. AMIA (2021)
David S. Carrell, Bradley A. Malin, David J. Cronkite, John S. Aberdeen, Cheryl Clark, Muqun (Rachel) Li, Dikshya Bastakoty, Steve Nyemba, Lynette Hirschman
Resilience of clinical text de-identified with "hiding in plain sight" to hostile reidentification attacks by human readers. J. Am. Medical Informatics Assoc. 27 (9) (2020)
George Hripcsak, Ning Shang, Peggy L. Peissig, Luke V. Rasmussen, Cong Liu, Barbara Benoit, Robert J. Carroll, David S. Carrell, Joshua C. Denny, Ozan Dikilitas, Vivian S. Gainer, Kayla Marie Howell, Jeffrey G. Klann, Iftikhar J. Kullo, Todd Lingren, Frank D. Mentch, Shawn N. Murphy, Karthik Natarajan, Chunhua Weng
Facilitating phenotype transfer using a common data model. J. Biomed. Informatics 96 (2019)
David S. Carrell, David J. Cronkite, Muqun (Rachel) Li, Steve Nyemba, Bradley A. Malin, John S. Aberdeen, Lynette Hirschman
The machine giveth and the machine taketh away: a parrot attack on clinical text deidentified with hiding in plain sight. J. Am. Medical Informatics Assoc. 26 (12) (2019)
Nathaniel D. Mercaldo, Kyle B. Brothers, David S. Carrell, Ellen Wright Clayton, John J. Connolly, Ingrid A. Holm, Carol R. Horowitz, Gail P. Jarvik, Terrie E. Kitchner, Rongling Li, Catherine A. McCarty, Jennifer B. McCormick, Valerie D. McManus, Melanie F. Myers, Joshua J. Pankratz, Martha J. Shrubsole, Maureen E. Smith, Sarah C. Stallings, Janet L. Williams, Jonathan S. Schildcrout
Enrichment sampling for a multi-site patient survey using electronic health records and census data. J. Am. Medical Informatics Assoc. 26 (3) (2019)
Ning Shang, Cong Liu, Luke V. Rasmussen, Casey N. Ta, Robert J. Carroll, Barbara Benoit, Todd Lingren, Ozan Dikilitas, Frank D. Mentch, David S. Carrell, Wei-Qi Wei, Yuan Luo, Vivian S. Gainer, Iftikhar J. Kullo, Jennifer A. Pacheco, Hakon Hakonarson, Theresa L. Walunas, Joshua C. Denny, Chunhua Weng
Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics 99 (2019)
Catherine Y. Lim, Andrew B. L. Berry, Andrea L. Hartzler, Tad Hirsch, David S. Carrell, Zoë A. Bermet, James D. Ralston
Facilitating Self-reflection about Values and Self-care Among Individuals with Chronic Conditions. CHI (2019)
Yongtai Liu, Zhiyu Wan, Weiyi Xia, Murat Kantarcioglu, Yevgeniy Vorobeychik, Ellen Wright Clayton, Abel N. Kho, David S. Carrell, Bradley A. Malin
Detecting the Presence of an Individual in Phenotypic Summary Data. AMIA (2018)
Stéphane M. Meystre, David S. Carrell, Lynette Hirschman, John S. Aberdeen, Paul Fearn, Valentina Petkov, Jonathan C. Silverstein
Automatic Text De-Identification: How and When is it Acceptable? AMIA (2018)
Emily Rose Holzinger, Shefali S. Verma, Carrie Colleen Buchanan Moore, Molly A. Hall, Rishika De, Diane Gilbert-Diamond, Matthew B. Lanktree, Nathan Pankratz, Antoinette Amuzu, Amber Burt, Caroline Dale, Scott M. Dudek, Clement E. Furlong, Tom R. Gaunt, Daniel Seung Kim, Helene Riess, Suthesh Sivapalaratnam, Vinicius Tragante, Erik P. A. van Iperen, Ariel Brautbar, David S. Carrell, David R. Crosslin, Gail P. Jarvik, Helena Kuivaniemi, Iftikhar J. Kullo, Eric B. Larson, Laura J. Rasmussen-Torvik, Gerard Tromp, Jens Baumert, Karen J. Cruickshanks, Martin Farrall, Aroon D. Hingorani, G. K. Hovingh, Marcus E. Kleber, Barbara E. Klein, Ronald Klein, Wolfgang Koenig, Leslie A. Lange, Winfried März, Kari E. North, N. Charlotte Onland-Moret, Alex P. Reiner, Philippa J. Talmud, Yvonne T. van der Schouw, James G. Wilson, Mika Kivimäki, Meena Kumari, Jason H. Moore, Fotios Drenos, Folkert W. Asselbergs, Brendan J. Keating, Marylyn D. Ritchie
Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals. BioData Min. 10 (1) (2017)
David S. Carrell, Robert E. Schoen, Daniel A. Leffler, Michele Morris, Sherri Rose, Andrew Baer, Seth D. Crockett, Rebecca Gourevitch, Katie M. Dean, Ateev Mehrotra
Challenges in adapting existing clinical natural language processing systems to multiple, diverse health care settings. J. Am. Medical Informatics Assoc. 24 (5) (2017)
Jeffrey S. Brown, Robert Ball, David S. Carrell, Leonard W. D'Avolio, Keith Marsolo
Is an Algorithm Just an Algorithm? How to Define Clinical Concepts for Use in Comparative Safety and Effectiveness Distributed Research Networks. CRI (2017)
Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. J. Am. Medical Informatics Assoc. 23 (6) (2016)
David S. Carrell, David J. Cronkite, Roy E. Palmer, Kathleen Saunders, David E. Gross, Elizabeth T. Masters, Timothy R. Hylan, Michael Von Korff
Using natural language processing to identify problem usage of prescription opioids. Int. J. Medical Informatics 84 (12) (2015)
Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris
Desiderata for computable representations of electronic health records-driven phenotype algorithms. J. Am. Medical Informatics Assoc. 22 (6) (2015)