Chunhua Weng

ORCID

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 167

Top Venues

AMIA

J. Biomed. Informatics

J. Am. Medical Informatics Assoc.

MedInfo

Publications

Jimyung Park, Yilu Fang, Casey N. Ta, Gongbo Zhang, Betina Idnay, Fangyi Chen, David Feng, Rebecca Shyu, Emily R. Gordon, Matthew E. Spotnitz, Chunhua Weng
Criteria2Query 3.0: Leveraging generative large language models for clinical trial eligibility query generation. J. Biomed. Informatics 154 (2024)
Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng
Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness. J. Biomed. Informatics 153 (2024)
Aimiel Casillan, Michelle E. Florido, Jamie Galarza-Cornejo, Suzanne Bakken, John A Lynch, Wendy K. Chung, Kathleen F. Mittendorf, Eta S. Berner, John J. Connolly, Chunhua Weng, Ingrid A Holm, Atlas Khan, Krzysztof Kiryluk, Nita A Limdi, Lynn Petukhova, Maya Sabatello, Julia Wynn
Participant-guided development of bilingual genomic educational infographics for Electronic Medical Records and Genomics Phase IV study. J. Am. Medical Informatics Assoc. 31 (2) (2024)
Kayla Schiffer-Kane, Cong Liu, Tiffany J. Callahan, Casey N. Ta, Jordan G. Nestor, Chunhua Weng
Converting OMOP CDM to phenopackets: A model alignment and patient data representation evaluation. J. Biomed. Informatics 155 (2024)
Gongbo Zhang, Yiliang Zhou, Yan Hu, Hua Xu, Chunhua Weng, Yifan Peng
A Span-based Model for Extracting Overlapping PICO Entities from RCT Publications. CoRR (2024)
Betina Ross S. Idnay, Jianfang Liu, Yilu Fang, Alex Hernandez, Shivani Kaw, Alicia Etwaru, Janeth Juarez Padilla, Sergio Ozoria Ramirez, Karen Marder, Chunhua Weng, Rebecca Schnall
Sociotechnical feasibility of natural language processing-driven tools in clinical trial eligibility prescreening for Alzheimer's disease and related dementias. J. Am. Medical Informatics Assoc. 31 (5) (2024)
Betina Idnay, Yilu Fang, Edward Stanley, Brenda Ruotolo, Wendy K. Chung, Karen Marder, Chunhua Weng
Promoting equity in clinical research: The role of social determinants of health. J. Biomed. Informatics 156 (2024)
Gongbo Zhang, Yiliang Zhou, Yan Hu, Hua Xu, Chunhua Weng, Yifan Peng
A span-based model for extracting overlapping PICO entities from randomized controlled trial publications. J. Am. Medical Informatics Assoc. 31 (5) (2024)
Jingye Yang, Cong Liu, Wendy Deng, Da Wu, Chunhua Weng, Yunyun Zhou, Kai Wang
Enhancing phenotype recognition in clinical notes using large language models: PhenoBCBERT and PhenoGPT. Patterns 5 (1) (2024)
Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng
Leveraging Generative AI for Clinical Evidence Summarization Needs to Achieve Trustworthiness. CoRR (2023)
Abigail Newbury, Hao Liu, Betina Ross S. Idnay, Chunhua Weng
The suitability of UMLS and SNOMED-CT for encoding outcome concepts. J. Am. Medical Informatics Assoc. 30 (12) (2023)
Liyan Tang, Zhaoyi Sun, Betina Ross S. Idnay, Jordan G. Nestor, Ali Soroush, Pierre A. Elias, Ziyang Xu, Ying Ding, Greg Durrett, Justin F. Rousseau, Chunhua Weng, Yifan Peng
Evaluating large language models on medical evidence summarization. npj Digit. Medicine 6 (2023)
Casey N. Ta, Jason E. Zucker, Po-Hsiang Chiu, Yilu Fang, Karthik Natarajan, Chunhua Weng
Clinical and temporal characterization of COVID-19 subgroups using patient vector embeddings of electronic health records. J. Am. Medical Informatics Assoc. 30 (2) (2023)
Betina Ross S. Idnay, Yilu Fang, Caitlin N. Dreisbach, Karen Marder, Chunhua Weng, Rebecca Schnall
Clinical research staff perceptions on a natural language processing-driven tool for eligibility prescreening: An iterative usability assessment. Int. J. Medical Informatics 171 (2023)
Jingye Yang, Cong Liu, Wendy Deng, Da Wu, Chunhua Weng, Yunyun Zhou, Kai Wang
Enhancing Phenotype Recognition in Clinical Notes Using Large Language Models: PhenoBCBERT and PhenoGPT. CoRR (2023)
Hao Liu, Yifan Peng, Chunhua Weng
How Good Is ChatGPT for Medication Evidence Synthesis? MIE (2023)
Karthik Natarajan, Chunhua Weng, Soumitra Sengupta
A Model for Multi-Institutional Clinical Data Repository. MIE (2023)
Yilu Fang, Hao Liu, Betina Ross S. Idnay, Casey N. Ta, Karen Marder, Chunhua Weng
A data-driven approach to optimizing clinical study eligibility criteria. J. Biomed. Informatics 142 (2023)
Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen
Characterizing variability of electronic health record-driven phenotype definitions. J. Am. Medical Informatics Assoc. 30 (3) (2023)
Da Wu, Jingye Yang, Steven Klein, Cong Liu, Tzung-Chien Hsieh, Peter Krawitz, Chunhua Weng, Gholson J. Lyon, Jennifer M. Kalish, Kai Wang
Multimodal Machine Learning Combining Facial Images and Clinical Texts Improves Diagnosis of Rare Genetic Diseases. CoRR (2023)
Jenna Kefeli, Ali Soroush, Courtney J. Diamond, Haley M. Zylberberg, Benjamin L. May, Julian A. Abrams, Chunhua Weng, Nicholas P. Tatonetti
Large Language Models for Granularized Barrett's Esophagus Diagnosis Classification. CoRR (2023)
Tian Kang, Yingcheng Sun, Jae Hyun Kim, Casey N. Ta, Adler J. Perotte, Kayla Schiffer, Mutong Wu, Yang Zhao, Nour Moustafa-Fahmy, Yifan Peng, Chunhua Weng
: a three-level knowledge representation for medical evidence computation and comprehension. J. Am. Medical Informatics Assoc. 30 (6) (2023)
Jianfu Li, Qiang Wei, Omid Ghiasvand, Miao Chen, Victor S. Lobanov, Chunhua Weng, Hua Xu
A comparative study of pre-trained language models for named entity recognition in clinical trial eligibility criteria from multiple corpora. BMC Medical Informatics Decis. Mak. 22 (3) (2022)
Junghwan Lee, Cong Liu, Junyoung Kim, Zhehuan Chen, Yingcheng Sun, James R. Rogers, Wendy K. Chung, Chunhua Weng
Deep learning for rare disease: A scoping review. J. Biomed. Informatics 135 (2022)
Betina Ross S. Idnay, Yilu Fang, Yingcheng Sun, Hao Liu, Zhehuan Chen, Rebecca Schnall, Chunhua Weng
Criteria2Query 2.0: Combining Machine Efficiency and Human Intelligence to Define a More Accurate and Feasible Cohort for Clinical Trial Recruitment. AMIA (2022)
Yilu Fang, Betina Ross S. Idnay, Yingcheng Sun, Hao Liu, Zhehuan Chen, Karen Marder, Hua Xu, Rebecca Schnall, Chunhua Weng
Combining human and machine intelligence for clinical trial eligibility querying. J. Am. Medical Informatics Assoc. 29 (7) (2022)
Sarah J. Nelson, Bethany Drury, Daniel Hood, Jeremy Harper, Tiffany Bernard, Chunhua Weng, Nan Kennedy, Bernard LaSalle, Ramkiran Gouripeddi, Consuelo H. Wilkins, Paul A. Harris
EHR-based cohort assessment for multicenter RCTs: a fast and flexible model for identifying potential study sites. J. Am. Medical Informatics Assoc. 29 (4) (2022)
Yu Deng, Jennifer A. Pacheco, Anika S. Ghosh, Anh H. Chung, Chengsheng Mao, Joshua C. Smith, Juan Zhao, Wei-Qi Wei, April Barnado, Chad Dorn, Chunhua Weng, Cong Liu, Adam Cordon, Jingzhi Yu, Yacob Tedla, Abel Kho, Rosalind Ramsey-Goldman, Theresa Walunas, Yuan Luo
Natural language processing to identify lupus nephritis phenotype in electronic health records. BMC Medical Informatics Decis. Mak. (2) (2022)
Betina Ross S. Idnay, Yilu Fang, Caitlin N. Dreisbach, Karen Marder, Chunhua Weng, Rebecca Schnall
Optimizing Clinical Research Eligibility Prescreening: An Iterative Usability Evaluation of an NLP-driven Cohort Identification Tool. AMIA (2022)
Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. 29 (8) (2022)
Ali Soroush, Courtney J. Diamond, Haley Zylberberg, Julian Abrams, Chunhua Weng
A Clinical Data Summarization Pipeline for Patients at Risk for Esophageal Adenocarcinoma Undergoing Endoscopic Surveillance. AMIA (2022)
Young J. Juhn, Euijung Ryu, Chung-Il Wi, Katherine S. King, Momin M. Malik, Santiago Romero-Brufau, Chunhua Weng, Sunghwan Sohn, Richard R. Sharp, John D. Halamka
Assessing socioeconomic bias in machine learning algorithms in health care: a case study of the HOUSES index. J. Am. Medical Informatics Assoc. 29 (7) (2022)
Kayla Schiffer, Chunhua Weng, Yoolim Choi
Leveraging Hierarchical Concept Relations to Improve Automatic Detection of Off-Label Drug Use in Electronic Health Records Data. AMIA (2022)
Hao Liu, Simona Carini, Zhehuan Chen, Spencer Phillips Hey, Ida Sim, Chunhua Weng
Ontology-based categorization of clinical studies by their conditions. J. Biomed. Informatics 135 (2022)
Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen
Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Sylvia Cho, Ipek Ensari, Noémie Elhadad, Chunhua Weng, Jennifer M. Radin, Brinnae Bent, Pooja M. Desai, Karthik Natarajan
An interactive fitness-for-use data completeness tool to assess activity tracker data. J. Am. Medical Informatics Assoc. 29 (12) (2022)
James R. Rogers, Jovana Pavisic, Casey N. Ta, Cong Liu, Ali Soroush, Ying Kuen Cheung, George Hripcsak, Chunhua Weng
Leveraging electronic health record data for clinical trial planning by assessing eligibility criteria's impact on patient count and safety. J. Biomed. Informatics 127 (2022)
Zhehuan Chen, Yilu Fang, Hao Liu, Chunhua Weng
Data-Driven Modeling of Randomized Controlled Trial Outcomes. MIE (2022)
Chi Yuan, Patrick B. Ryan, Casey N. Ta, Jae Hyun Kim, Ziran Li, Chunhua Weng
From clinical trials to clinical practice: How long are drugs tested and then used by patients? J. Am. Medical Informatics Assoc. 28 (11) (2021)
Yu Deng, Jennifer A. Pacheco, Anh H. Chung, Chengsheng Mao, Joshua C. Smith, Juan Zhao, Wei-Qi Wei, April Barnado, Chunhua Weng, Cong Liu, Adam Cordon, Jingzhi Yu, Yacob Tedla, Abel N. Kho, Rosalind Ramsey-Goldman, Theresa Walunas, Yuan Luo
Natural language processing to identify lupus nephritis phenotype in electronic health records. CoRR (2021)
Yingcheng Sun, Alex M. Butler, Fengyang Lin, Hao Liu, Latoya A. Stewart, Jae Hyun Kim, Betina Ross S. Idnay, Qingyin Ge, Xinyi Wei, Cong Liu, Chi Yuan, Chunhua Weng
The COVID-19 Trial Finder. J. Am. Medical Informatics Assoc. 28 (3) (2021)
Tian Kang, Ali Turfah, Jaehyun Kim, Adler J. Perotte, Chunhua Weng
A neuro-symbolic method for understanding free-text medical evidence. J. Am. Medical Informatics Assoc. 28 (8) (2021)
Matthew E. Spotnitz, Jason Patterson, Vojtech Huser, Chunhua Weng, Karthik Natarajan
Harmonization of Measurement Codes for Concept-Oriented Lab Data Retrieval. AMIA (2021)
Yingcheng Sun, Alex M. Butler, Ibrahim Diallo, Jae Hyun Kim, Casey N. Ta, James R. Rogers, Hao Liu, Chunhua Weng
A Framework for Systematic Assessment of Clinical Trial Population Representativeness Using Electronic Health Records Data. Appl. Clin. Inform. 12 (4) (2021)
Yilu Fang, Jae Hyun Kim, Betina Ross S. Idnay, Rebeca Aragon Garcia, Carmen E. Castillo, Yingcheng Sun, Hao Liu, Cong Liu, Chi Yuan, Chunhua Weng
Participatory Design of a Clinical Trial Eligibility Criteria Simplification Method. MIE (2021)
Junghwan Lee, Cong Liu, Casey N. Ta, Chunhua Weng
Towards Better Diagnosis Prediction Using Bidirectional Recurrent Neural Networks. MedInfo (2021)
Jianfu Li, Qiang Wei, Omid Ghiasvand, Miao Chen, Victor S. Lobanov, Chunhua Weng, Hua Xu
Study of Pre-trained Language Models for Named Entity Recognition in Clinical Trial Eligibility Criteria from Multiple Corpora. ICHI (2021)
Matthew E. Spotnitz, Jason Patterson, Vojtech Huser, Chunhua Weng, Karthik Natarajan
Harmonization of Measurement Codes for Concept-Oriented Lab Data Retrieval. MedInfo (2021)
Jae Hyun Kim, Alex M. Butler, Casey N. Ta, Yingcheng Sun, Mathew S. Maurer, Chunhua Weng
The potential role of EHR data in optimizing eligibility criteria definition for cardiovascular outcome trials. Int. J. Medical Informatics 156 (2021)
Yingcheng Sun, Alex M. Butler, Latoya A. Stewart, Hao Liu, Chi Yuan, Christopher T. Southard, Jae Hyun Kim, Chunhua Weng
Building an OMOP common data model-compliant annotated corpus for COVID-19 clinical trials. J. Biomed. Informatics 118 (2021)
Zhehuan Chen, Hao Liu, Alex M. Butler, Anna Ostropolets, Chunhua Weng
Potential Role of Clinical Trial Eligibility Criteria in Electronic Phenotyping. MIE (2021)
Fengyang Lin, Hao Liu, Paul Moon, Chunhua Weng
A Sample Size Extractor for RCT Reports. MedInfo (2021)
Ning Shang, Atlas Khan, Fernanda Polubriaginof, Francesca Zanoni, Karla Mehl, David Fasel, Paul E. Drawz, Robert J. Carrol, Joshua C. Denny, Matthew A. Hathcock, Adelaide M. Arruda-Olson, Peggy L. Peissig, Richard A. Dart, Murray H. Brilliant, Eric B. Larson, David S. Carrell, Sarah A. Pendergrass, Shefali Setia Verma, Marylyn D. Ritchie, Barbara Benoit, Vivian S. Gainer, Elizabeth W. Karlson, Adam S. Gordon, Gail P. Jarvik, Ian B. Stanaway, David R. Crosslin, Sumit Mohan, Iuliana Ionita-Laza, Nicholas P. Tatonetti, Ali G. Gharavi, George Hripcsak, Chunhua Weng, Krzysztof Kiryluk
Medical records-based chronic kidney disease phenotype for clinical care and "big data" observational and genetic studies. npj Digit. Medicine 4 (2021)
Zhehuan Chen, Hao Liu, Stan Liao, Marguerite Bernard, Tian Kang, Latoya A. Stewart, Chunhua Weng
Representation and Normalization of Complex Interventions for Evidence Computing. MedInfo (2021)
James R. Rogers, Junghwan Lee, Ziheng Zhou, Ying Kuen Cheung, George Hripcsak, Chunhua Weng
Contemporary use of real-world data for clinical trial conduct in the United States: a scoping review. J. Am. Medical Informatics Assoc. 28 (1) (2021)
Lauren Franks, Hao Liu, Mitchell S. V. Elkind, Muredach P. Reilly, Chunhua Weng, Shing M. Lee
Misalignment between COVID-19 hotspots and clinical trial sites. J. Am. Medical Informatics Assoc. 28 (11) (2021)
Tian Kang, Adler J. Perotte, Youlan Tang, Casey N. Ta, Chunhua Weng
UMLS-based data augmentation for natural language processing of clinical research literature. J. Am. Medical Informatics Assoc. 28 (4) (2021)
Melissa Beauchemin, Chunhua Weng, Lillian Sung, Adrienne Pichon, Maura Abbott, Dawn L. Hershman, Rebecca Schnall
Data Quality of Chemotherapy-Induced Nausea and Vomiting Documentation. Appl. Clin. Inform. 12 (02) (2021)
Hao Liu, Chi Yuan, Alex M. Butler, Yingcheng Sun, Chunhua Weng
A knowledge base of clinical trial eligibility criteria. J. Biomed. Informatics 117 (2021)
Amelia J. Averitt, Patrick B. Ryan, Chunhua Weng, Adler J. Perotte
A conceptual framework for external validity. J. Biomed. Informatics 121 (2021)
Cong Liu, Hao Liu, Casey N. Ta, James Roger, Alex Butler, Junghwan Lee, Jaehyun Kim, Ning Shang, Chunhua Weng
Evaluation of Criteria2Query: Towards Augmented Intelligence for Cohort Identification. MedInfo (2021)
Ali Turfah, Hao Liu, Latoya A. Stewart, Tian Kang, Chunhua Weng
Extending PICO with Observation Normalization for Evidence Computing. MedInfo (2021)
James R. Rogers, George Hripcsak, Ying Kuen Cheung, Chunhua Weng
Clinical comparison between trial participants and potentially eligible patients using electronic health record data: A generalizability assessment method. J. Biomed. Informatics 119 (2021)
Betina Ross S. Idnay, Caitlin N. Dreisbach, Chunhua Weng, Rebecca Schnall
A systematic review on natural language processing systems for eligibility prescreening in clinical research. J. Am. Medical Informatics Assoc. 29 (1) (2021)
Danqing Xu, Chen Wang, Atlas Khan, Ning Shang, Zihuai He, Adam Gordon, Iftikhar J. Kullo, Shawn N. Murphy, Yizhao Ni, Wei-Qi Wei, Ali Gharavi, Krzysztof Kiryluk, Chunhua Weng, Iuliana Ionita-Laza
Quantitative disease risk scores from EHR with applications to clinical risk stratification and genetic studies. npj Digit. Medicine 4 (2021)
Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei
Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. AMIA (2021)
Jia Guo, Chi Yuan, Ning Shang, Tian Zheng, Natalie A. Bello, Krzysztof Kiryluk, Chunhua Weng, Shuang Wang
Similarity-based health risk prediction using Domain Fusion and electronic health records data. J. Biomed. Informatics 116 (2021)
Jae Hyun Kim, Casey N. Ta, Cong Liu, Cynthia Sung, Alex M. Butler, Latoya A. Stewart, Lyudmila Ena, James R. Rogers, Junghwan Lee, Anna Ostropolets, Patrick B. Ryan, Hao Liu, Shing M. Lee, Mitchell S. V. Elkind, Chunhua Weng
Towards clinical data-driven eligibility criteria optimization for interventional COVID-19 clinical trials. J. Am. Medical Informatics Assoc. 28 (1) (2021)
Yingcheng Sun, Jiaqi Tang, Alex Butler, Cong Liu, Yilu Fang, Chunhua Weng
Interactive Similarity-Based Search of Clinical Trials. MedInfo (2021)
Adrienne Pichon, Betina Ross S. Idnay, Rebecca Schnall, Karen Marder, Chunhua Weng
Cognitive Function Characterization Using Electronic Health Records Notes. AMIA (2021)
James R. Rogers, Hollis Mills, Lisa V. Grossman, Andrew Goldstein, Chunhua Weng
Understanding the nature and scope of clinical research commentaries in PubMed. J. Am. Medical Informatics Assoc. 27 (3) (2020)
Anna Ostropolets, Christian G. Reich, Patrick B. Ryan, Chunhua Weng, Anthony Molinaro, Frank J. DeFalco, Jitendra Jonnagaddala, Siaw-Teng Liaw, Hokyun Jeon, Rae Woong Park, Matthew E. Spotnitz, Karthik Natarajan, Kristin Kostka, George Argyriou, Robert T. Miller, Andrew E. Williams, Evan Minty, José D. Posada, George Hripcsak
Characterizing database granularity using SNOMED-CT hierarchy. AMIA (2020)
Marissa Burgermaster, Jung Hoon Son, Patricia G. Davidson, Arlene M. Smaldone, Gilad Kuperman, Daniel J. Feller, Katherine Gardner Burt, Matthew E. Levine, David J. Albers, Chunhua Weng, Lena Mamykina
A new approach to integrating patient-generated data with expert knowledge for personalized goal setting: A pilot study. Int. J. Medical Informatics 139 (2020)
Hongfang Liu, Xiaoqian Jiang, Serguei V. S. Pakhomov, Chunhua Weng, Hua Xu
The Open Health Natural Language Processing Collaboratory. AMIA (2020)
Alex M. Butler, Junghwan Lee, Yat S. So, Linda Busacca, Karen Marder, Henry N. Ginsberg, Dianne Frederick, Ismael Castaneda, Elizabeth Guerrido, Chunhua Weng
Impact of IMPACT: Longitudinal Analysis of an Integrated Participant Scheduling System in a Clinical Research Setting. AMIA (2020)
Hao Liu, Chi Yuan, Alex M. Butler, Yingcheng Sun, Chunhua Weng
Potential Role of Clinical Trial Eligibility Criteria in Electronic Phenotyping. AMIA (2020)
Chi Yuan, Yongli Wang, Ning Shang, Ziran Li, Ruxin Zhao, Chunhua Weng
A graph-based method for reconstructing entities from coordination ellipsis in medical text. J. Am. Medical Informatics Assoc. 27 (9) (2020)
Anna Ostropolets, Christian G. Reich, Patrick B. Ryan, Ning Shang, George Hripcsak, Chunhua Weng
Adapting electronic health records-derived phenotypes to claims data: Lessons learned in using limited clinical data for phenotyping. J. Biomed. Informatics 102 (2020)
Chunhua Weng, Nigam H. Shah, George Hripcsak
Deep phenotyping: Embracing complexity and temporality - Towards scalability, portability, and interoperability. J. Biomed. Informatics 105 (2020)
James R. Rogers, Junghwan Lee, Ziheng Zhou, Patrick B. Ryan, George Hripcsak, Chunhua Weng
Contemporary Use of Real World Data for Clinical Trial Conduct. AMIA (2020)
Ziran Li, Huanyao Chen, Chi Yuan, Chunhua Weng
How Have Experimental Cancer Interventions Evolved over Time? MIE (2020)
Amelia J. Averitt, Chunhua Weng, Patrick B. Ryan, Adler J. Perotte
Translating evidence into practice: eligibility criteria fail to eliminate clinically significant differences between real-world and study populations. npj Digit. Medicine 3 (2020)
Jacqueline Peng, Mengge Zhao, James Havrilla, Cong Liu, Chunhua Weng, Whitney Guthrie, Robert Schultz, Kai Wang, Yunyun Zhou
Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder. BMC Medical Informatics Decis. Mak. (11) (2020)
Melissa Beauchemin, Rebecca Schnall, Chunhua Weng
Completeness and Concordance in Electronic Health Record (EHR) Documentation of Chemotherapy-Induced Nausea and Vomiting (CINV) in Pediatric Cancer. AMIA (2019)
Chunhua Weng, Carol Friedman, Casey A. Rommel, John F. Hurdle
A two-site survey of medical center personnel's willingness to share clinical data for research: implications for reproducible health NLP research. BMC Medical Informatics Decis. Mak. (3) (2019)
Xinyuan Zhang, Yogasudha Veturi, Shefali Setia Verma, William Bone, Anurag Verma, Anastasia Lucas, Scott J. Hebbring, Joshua C. Denny, Ian Stanaway, Gail P. Jarvik, David R. Crosslin, Eric B. Larson, Laura Rasmussen-Torvik, Sarah A. Pendergrass, Jordan W. Smoller, Hakon Hakonarson, Patrick Sleiman, Chunhua Weng, David Fasel, Wei-Qi Wei, Iftikhar J. Kullo, Daniel J. Schaid, Wendy K. Chung, Marylyn D. Ritchie
Detecting potential pleiotropy across cardiovascular and neurological diseases using univariate, bivariate, and multivariate methods on 43, 870 individuals from the eMERGE network. PSB (2019)
George Hripcsak, Ning Shang, Peggy L. Peissig, Luke V. Rasmussen, Cong Liu, Barbara Benoit, Robert J. Carroll, David S. Carrell, Joshua C. Denny, Ozan Dikilitas, Vivian S. Gainer, Kayla Marie Howell, Jeffrey G. Klann, Iftikhar J. Kullo, Todd Lingren, Frank D. Mentch, Shawn N. Murphy, Karthik Natarajan, Chunhua Weng
Facilitating phenotype transfer using a common data model. J. Biomed. Informatics 96 (2019)
Cong Liu, Casey N. Ta, James R. Rogers, Ziran Li, Junghwan Lee, Alex M. Butler, Ning Shang, Fabricio Sampaio Peres Kury, Liwei Wang, Feichen Shen, Hongfang Liu, Lyudmila Ena, Carol Friedman, Chunhua Weng
Ensembles of natural language processing systems for portable phenotyping solutions. J. Biomed. Informatics 100 (2019)
Casey N. Ta, Chunhua Weng
Detecting Systemic Data Quality Issues in Electronic Health Records. MedInfo (2019)
Duo Helen Wei, Tian Kang, Harold Alan Pincus, Chunhua Weng
Construction of Disease Similarity Networks Using Concept Embedding and Ontology. MedInfo (2019)
David A. Hanauer, Qiaozhu Mei, V. G. Vinod Vydiswaran, Karandeep Singh, Zach Landis-Lewis, Chunhua Weng
Complexities, variations, and errors of numbering within clinical notes: the potential impact on information extraction and cohort-identification. BMC Medical Informatics Decis. Mak. (3) (2019)
Julia Wynn, Wei Wei, Xinhang Li, Yat So, Suzanne R. Bakken, Chunhua Weng, Wendy K. Chung
User engagement with web-based genomics education videos and implications for designing scalable patient education materials. AMIA (2019)
Chi Yuan, Patrick B. Ryan, Casey N. Ta, Yixuan Guo, Ziran Li, Jill Hardin, Rupa Makadia, Peng Jin, Ning Shang, Tian Kang, Chunhua Weng
Criteria2Query: a natural language interface to clinical databases for cohort definition. J. Am. Medical Informatics Assoc. 26 (4) (2019)
Tian Kang, Shirui Zou, Chunhua Weng
Pretraining to Recognize PICO Elements from Randomized Controlled Trial Literature. MedInfo (2019)
Shengqiang Chi, Xinhang Li, Yu Tian, Jun Li, Xiang-Xing Kong, Ke-Feng Ding, Chunhua Weng, Jing-Song Li
Semi-supervised learning to improve generalizability of risk prediction models. J. Biomed. Informatics 92 (2019)
Chunhua Weng, Amy K. Mir, David A. Hanauer, James J. Cimino
Dialogue Analysis for Clinical Data Query Mediation. MedInfo (2019)
Ning Shang, Cong Liu, Luke V. Rasmussen, Casey N. Ta, Robert J. Carroll, Barbara Benoit, Todd Lingren, Ozan Dikilitas, Frank D. Mentch, David S. Carrell, Wei-Qi Wei, Yuan Luo, Vivian S. Gainer, Iftikhar J. Kullo, Jennifer A. Pacheco, Hakon Hakonarson, Theresa L. Walunas, Joshua C. Denny, Chunhua Weng
Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics 99 (2019)
Fabricio Sampaio Peres Kury, Li-heng Fu, Chi Yuan, Ida Sim, Simona Carini, Chunhua Weng
Hidden Gaps in Using Common Data Models to Achieve Interoperability Between Electronic Phenotypes and Clinical Data. AMIA (2019)
Olga Lyudovyk, Yufeng Shen, Nicholas P. Tatonetti, Susan J. Hsiao, Mahesh M. Mansukhani, Chunhua Weng
Pathway analysis of genomic pathology tests for prognostic cancer subtyping. J. Biomed. Informatics 98 (2019)
Yanshan Wang, Andrew Wen, Sijia Liu, Jennifer L. St. Sauver, Adil E. Bharucha, Chunhua Weng, Hongfang Liu
Clinical Use of an Information Retrieval Framework for Cohort Discovery from Electronic Health Records. AMIA (2019)

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Chunhua Weng