Robert R. Freimuth

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 31

Top Topics

Knowledge Resources

Clinical Decision Support

Top Venues

J. Am. Medical Informatics Assoc.

Appl. Clin. Inform.

BMC Medical Informatics Decis. Mak.

Publications

Nephi A. Walton, Radhakrishnan Nagarajan, Chen Wang, Murat Sincan, Robert R. Freimuth, David B. Everman, Derek C. Walton, Scott P. McGrath, Dominick J. Lemas, Panayiotis V. Benos, Alexander V. Alekseyenko, Qianqian Song, Ece Gamsiz Uzun, Casey Overby Taylor, Alper Uzun, Thomas N. Person, Nadav Rappoport, Zhongming Zhao, Marc S. Williams
Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup. J. Am. Medical Informatics Assoc. 31 (2) (2024)
Aly Khalifa, Robert R. Freimuth
Representing NIH Genetic Test Registry Data in the FHIR Genomic Study Resource. ICIMTH (2023)
Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. 29 (8) (2022)
Yiqing Zhao, Matthew Brush, Chen Wang, Alex H. Wagner, Hongfang Liu, Robert R. Freimuth
Leveraging a pharmacogenomics knowledgebase to formulate a drug response phenotype terminology for genomic medicine. Bioinform. 38 (23) (2022)
Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen
Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Jane L. Shellum, Davide Sottara, Robert R. Freimuth, Aaron Nathan, Adam M. Bartscher
Content in Context - Individualizing Knowledge Resources for Delivery at the Point of Care. AMIA (2021)
Mullai Murugan, Lawrence J. Babb, Casey Overby Taylor, Luke V. Rasmussen, Robert R. Freimuth, Eric Venner, Fei Yan, Victoria Yi, Stephen J. Granite, Hana Zouk, Samuel J. Aronson, Kevin Power, Alexander Fedotov, David R. Crosslin, David Fasel, Gail P. Jarvik, Hakon Hakonarson, Hana Bangash, Iftikhar J. Kullo, John J. Connolly, Jordan G. Nestor, Pedro J. Caraballo, Wei-Qi Wei, Ken Wiley, Heidi L. Rehm, Richard A. Gibbs
Genomic considerations for FHIR®; eMERGE implementation lessons. J. Biomed. Informatics 118 (2021)
Luke V. Rasmussen, John J. Connolly, Guilherme Del Fiol, Robert R. Freimuth, Douglas B. Pet, Josh F. Peterson, Brian H. Shirts, Justin B. Starren, Marc S. Williams, Nephi Walton, Casey Overby Taylor
Infobuttons for Genomic Medicine: Requirements and Barriers. Appl. Clin. Inform. 12 (02) (2021)
Carolyn Petersen, Jeffery Smith, Robert R. Freimuth, Kenneth W. Goodman, Gretchen Purcell Jackson, Joseph L. Kannry, Hongfang Liu, Subha Madhavan, Dean F. Sittig, Adam Wright
Recommendations for the safe, effective use of adaptive CDS in the US healthcare system: an AMIA position paper. J. Am. Medical Informatics Assoc. 28 (4) (2021)
Alex H. Wagner, Lawrence J. Babb, Melissa S. Cline, Helen Schuilenburg, Tristan Nelson, Robert R. Freimuth, Reece Hart
The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation of Molecular Variation. AMIA (2021)
Yiqing Zhao, Matthew Brush, Hongfang Liu, Robert R. Freimuth
Modeling Variant Annotation (VA) Therapeutic Association Statements using a SEPIO-Based Workflow. AMIA (2021)
Stephanie J. Garcia, Teresa Zayas-Cabán, Robert R. Freimuth
Sync for Genes: Making Clinical Genomics Available for Precision Medicine at the Point-of-Care. Appl. Clin. Inform. 11 (02) (2020)
Branden C. Hickey, Adam M. Bartscher, Marc Sainvil, Robert R. Freimuth, Jane L. Shellum, Davide Sottara
Automated Extraction of Computable Clinical Decision Support Rules from an Electronic Health Record (EHR) System. AMIA (2019)
Stephanie Garcia, Robert R. Freimuth, David E. Jones, Robert P. Milius
Sync for Genes: Integrating Genetic Information at the Point of Care. AMIA (2019)
Shashwat Nagar, Richard C. Kiefer, Robert R. Freimuth
A Scalable Encoding Scheme for Clinical Genomic Results Delivered Through Web Services and a Mobile Application. AMIA (2018)
Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. 25 (10) (2018)
Ali Hasnie, Pedro J. Caraballo, Robert R. Freimuth, Iftikhar J. Kullo
Development & Implementation of a Clinical Decision Support Tool for Familial Hypercholesterolemia. AMIA (2017)
Laura K. Wiley, Peter Tarczy-Hornoch, Joshua C. Denny, Robert R. Freimuth, Casey L. Overby, Nigam Shah, Ross D. Martin, Indra Neil Sarkar
Harnessing next-generation informatics for personalizing medicine: a report from AMIA's 2014 Health Policy Invitational Meeting. J. Am. Medical Informatics Assoc. 23 (2) (2016)
James M. Hoffman, Henry M. Dunnenberger, Jonathan D. Burlison, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Stuart A. Scott, Josh F. Peterson, Heidi L. Rehm, Teri E. Klein, Mary V. Relling, Kelly E. Caudle
The Clinical Pharmacogenetics Implementation Consortium (CPIC) Term Standardization for Clinical Pharmacogenetic Test Results: Alleles and Phenotypes. CRI (2016)
Jane L. Shellum, Robert R. Freimuth, Steve G. Peters, Rick Nishimura, Rajeev Chaudhry, Steve Demuth, Amy Knopp, Tim Miksch, Dawn S. Milliner
Knowledge as a Service at the Point of Care. AMIA (2016)
Ayesha Aziz, Kensaku Kawamoto, Karen Eilbeck, Marc S. Williams, Robert R. Freimuth, Mark A. Hoffman, Luke V. Rasmussen, Casey Lynnette Overby, Brian H. Shirts, James M. Hoffman, Brandon M. Welch
The genomic CDS sandbox: An assessment among domain experts. J. Biomed. Informatics 60 (2016)
Casey L. Overby, John J. Connolly, Christopher G. Chute, Joshua C. Denny, Robert R. Freimuth, Andrea L. Hartzler, Ingrid A. Holm, Shannon F. Manzi, Jyotishman Pathak, Peggy L. Peissig, Maureen E. Smith, Marc S. Williams, Brian H. Shirts, Elena M. Stoffel, Peter Tarczy-Hornoch, Carolyn Rohrer Vitek, Wendy A. Wolf, Justin Starren, Luke V. Rasmussen
Practical considerations for implementing genomic information resources. Appl. Clin. Inform. 7 (03) (2016)
Hua Min, Stuart Turner, Sherri de Coronado, Brian Davis, Trish Whetzel, Robert R. Freimuth, Harold R. Solbrig, Richard C. Kiefer, Michael Riben, Grace A. Stafford, Lawrence W. Wright, Riki Ohira
Towards a Standard Ontology Metadata Model. ICBO/BioCreative (2016)
Jessica D. Tenenbaum, Subha Madhavan, Robert R. Freimuth, Joshua C. Denny, Lewis J. Frey
Translational Bioinformatics 101. PSB (2016)
James M. Hoffman, Henry M. Dunnenberger, J. Kevin Hicks, Kelly E. Caudle, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Teri E. Klein, Josh F. Peterson
Developing knowledge resources to support precision medicine: principles from the Clinical Pharmacogenetics Implementation Consortium (CPIC). J. Am. Medical Informatics Assoc. 23 (4) (2016)
Jessica D. Tenenbaum, Paul Avillach, Marge M. Benham-Hutchins, Matthew K. Breitenstein, Erin L. Crowgey, Mark A. Hoffman, Xia Jiang, Subha Madhavan, John E. Mattison, Radhakrishnan Nagarajan, Bisakha Ray, Dmitriy Shin, Shyam Visweswaran, Zhongming Zhao, Robert R. Freimuth
An informatics research agenda to support precision medicine: seven key areas. J. Am. Medical Informatics Assoc. 23 (4) (2016)
Casey L. Overby, Guilherme Del Fiol, Wendy S. Rubinstein, Donna R. Maglott, Tristan Nelson, Aleksandar Milosavljevic, Christa Martin, Scott Goehringer, Robert R. Freimuth, Marc S. Williams, Bret S. E. Heale
Integrating Genomic Resources with Electronic Health Records using the HL7 Infobutton Standard. Appl. Clin. Inform. 7 (03) (2016)
Matthias Samwald, José Antonio Miñarro-Giménez, Richard D. Boyce, Robert R. Freimuth, Klaus-Peter Adlassnig, Michel Dumontier
Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. BMC Medical Informatics Decis. Mak. 15 (2015)
Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby
CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Josh F. Peterson, Marc S. Williams, Casey L. Overby, Robert R. Freimuth, Iftikhar J. Kullo
Public Implementation Resources for Genomic Medicine. AMIA (2015)
Margaret K. Linan, Davide Sottara, Robert R. Freimuth
Creating Shareable Clinical Decision Support Rules for a Pharmacogenomics Clinical Guideline Using Structured Knowledge Representation. AMIA (2015)
Robert R. Freimuth, Kelly Wix, Qian Zhu, Mark Siska, Christopher G. Chute
Evaluation of RxNorm for Medication Clinical Decision Support. AMIA (2014)
Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams
A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA (2014)
Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute
Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements. AMIA (2013)
Stacey J. Winham, Robert R. Freimuth, Joanna M. Biernacka
A weighted random forests approach to improve predictive performance. Stat. Anal. Data Min. 6 (6) (2013)
Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study. J. Biomed. Informatics 46 (2) (2013)
Qian Zhu, Robert R. Freimuth, Jyotishman Pathak, Matthew J. Durski, Christopher G. Chute
Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL. J. Biomed. Informatics 46 (4) (2013)
Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce
An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. MedInfo (2013)
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. J. Am. Medical Informatics Assoc. 20 (3) (2013)
Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute
Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results. Pacific Symposium on Biocomputing (2012)
Robert R. Freimuth, Elaine T. Freund, Lisa Schick, Mukesh K. Sharma, Grace A. Stafford, Baris E. Suzek, Joyce Hernandez, Jason Hipp, Jenny M. Kelley, Konrad Rokicki, Sue Pan, Andrew J. Buckler, Todd H. Stokes, Anna T. Fernandez, Ian Fore, Kenneth H. Buetow, Juli D. Klemm
Life sciences domain analysis model. J. Am. Medical Informatics Assoc. 19 (6) (2012)
Stacey J. Winham, Colin L. Colby, Robert R. Freimuth, Xin Wang, Mariza de Andrade, Marianne Huebner, Joanna M. Biernacka
SNP interaction detection with Random Forests in high-dimensional genetic data. BMC Bioinform. 13 (2012)
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute
A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data. HISB (2012)
Jyotishman Pathak, Richard C. Kiefer, Robert R. Freimuth, Suzette J. Bielinski, Christopher G. Chute
Mining Genotype-Phenotype Associations from Electronic Health Records and Biorepositories using Semantic Web Technologies. AMIA (2012)
Robert R. Freimuth, Michael W. Schauer, Preeti Lodha, Poornima Govindrao, Rakesh Nagarajan, Christopher G. Chute
caBIG™ Compatibility Review System: Software to Support the Evaluation of Applications Using Defined Interoperability Criteria. AMIA (2008)