Josh F. Peterson

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 25

Top Topics

Clinical Decision Support

High Throughput

Knowledge Resources

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

Publications

Siru Liu, Allison B. McCoy, Aileen P. Wright, Babatunde Carew, Julian Z. Genkins, Sean S. Huang, Josh F. Peterson, Bryan D. Steitz, Adam Wright
Leveraging large language models for generating responses to patient messages - a subjective analysis. J. Am. Medical Informatics Assoc. 31 (6) (2024)
Siru Liu, Allison B. McCoy, Josh F. Peterson, Thomas A Lasko, Dean F. Sittig, Scott D. Nelson, Jennifer Andrews, Lorraine Patterson, Cheryl M. Cobb, David Mulherin, Colleen T. Morton, Adam Wright
Leveraging explainable artificial intelligence to optimize clinical decision support. J. Am. Medical Informatics Assoc. 31 (4) (2024)
Siru Liu, Aileen P. Wright, Allison B. McCoy, Sean S. Huang, Julian Z. Genkins, Josh F. Peterson, Yaa A. Kumah-Crystal, William Martinez, Babatunde Carew, Dara Mize, Bryan D. Steitz, Adam Wright
Using large language model to guide patients to create efficient and comprehensive clinical care message. J. Am. Medical Informatics Assoc. 31 (8) (2024)
Chao Yan, Monika E. Grabowska, Alyson L. Dickson, Bingshan Li, Zhexing Wen, Dan M. Roden, C. Michael Stein, Peter J. Embí, Josh F. Peterson, QiPing Feng, Bradley A. Malin, Wei-Qi Wei
Leveraging generative AI to prioritize drug repurposing candidates for Alzheimer's disease with real-world clinical validation. npj Digit. Medicine 7 (1) (2024)
Fuchen Li, Patrick Wu, Henry H. Ong, Josh F. Peterson, Wei-Qi Wei, Juan Zhao
Evaluating and mitigating bias in machine learning models for cardiovascular disease prediction. J. Biomed. Informatics 138 (2023)
Vern Eric Kerchberger, Josh F. Peterson, Wei-Qi Wei
Scanning the medical phenome to identify new diagnoses after recovery from COVID-19 in a US cohort. J. Am. Medical Informatics Assoc. 30 (2) (2023)
Jodell E. Linder, Ran Tao, Ni Ketut Wilmayani, Marc S. Williams, Josh F. Peterson
High-throughput assessment of genomic outcomes: development and validation of the HI-TAG knowledgebase. AMIA (2022)
Sarah DeLozier, Sarah Bland, Melissa McPheeters, Quinn S. Wells, Eric Farber-Eger, Cosmin Adrian Bejan, Daniel Fabbri, S. Trent Rosenbloom, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei, Josh F. Peterson, Lisa Bastarache
Phenotyping coronavirus disease 2019 during a global health pandemic: Lessons learned from the characterization of an early cohort. J. Biomed. Informatics 117 (2021)
Sarah DeLozier, Josh F. Peterson, Joshua C. Denny, Lisa Bastarache
Using Genomic Association Replication Rates as an EHR Quality Measure via the Phenotype-Genotype Reference Map (PGRM). AMIA (2021)
Neil S. Zheng, Jeremy L. Warner, Travis J. Osterman, Quinn S. Wells, Xiao-Ou Shu, Stephen A. Deppen, Seth J. Karp, Shon Dwyer, QiPing Feng, Nancy J. Cox, Josh F. Peterson, C. Michael Stein, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei
A retrospective approach to evaluating potential adverse outcomes associated with delay of procedures for cardiovascular and cancer-related diagnoses in the context of COVID-19. J. Biomed. Informatics 113 (2021)
Spiros C. Denaxas, Ge Liu, QiPing Feng, Ghazaleh Fatemifar, Lisa Bastarache, Vern Eric Kerchberger, Aroon D. Hingorani, R. Tom Lumbers, Josh F. Peterson, Wei-Qi Wei, Harry Hemingway
Mapping the Read2/CTV3 controlled clinical terminologies to Phecodes in UK Biobank primary care electronic health records: implementation and evaluation. AMIA (2021)
Juan Zhao, Monika E. Grabowska, Vern Eric Kerchberger, Joshua C. Smith, H. Nur Eken, QiPing Feng, Josh F. Peterson, S. Trent Rosenbloom, Kevin B. Johnson, Wei-Qi Wei
ConceptWAS: A high-throughput method for early identification of COVID-19 presenting symptoms and characteristics from clinical notes. J. Biomed. Informatics 117 (2021)
Luke V. Rasmussen, John J. Connolly, Guilherme Del Fiol, Robert R. Freimuth, Douglas B. Pet, Josh F. Peterson, Brian H. Shirts, Justin B. Starren, Marc S. Williams, Nephi Walton, Casey Overby Taylor
Infobuttons for Genomic Medicine: Requirements and Barriers. Appl. Clin. Inform. 12 (02) (2021)
Paul R. Dexter, Henry H. Ong, Amanda Elsey, Gillian Bell, Nephi Walton, Wendy K. Chung, Luke V. Rasmussen, J. Kevin Hicks, Aniwaa Owusu-obeng, Stuart A. Scott, Stephen B. Ellis, Josh F. Peterson
Development of a Genomic Data Flow Framework: Results of a Survey Administered to NIH-NHGRI IGNITE and eMERGE Consortia Participants. AMIA (2019)
Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo, Peggy L. Peissig, Justin B. Starren
Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network. J. Am. Medical Informatics Assoc. 26 (2) (2019)
Andrea H. Ramirez, Yaping Shi, Elliot M. Fielstein, Jonathan S. Schildcrout, Henry H. Ong, Joshua C. Denny, Josh F. Peterson
Extracting Drug Exposure Epochs and Drug Response Outcomes from Electronic Health Records. AMIA (2019)
Andrea H. Ramirez, Elliot M. Fielstein, QiPing Feng, Henry H. Ong, Jonathan S. Schildcrout, Yaping Shi, Joshua C. Denny, Josh F. Peterson
EHR Extraction of Longitudinal Exposure to Proton Pump Inhibitors. AMIA (2018)
Josh F. Peterson, Henry H. Ong, Julie A. Lynch, J. Kevin Hicks, Paul R. Dexter
Development and Implementation of Genomic Data Pipelines within US institutions: A pilot multi-site survey among NHGRI's IGNITE Genomic Medicine Sites. AMIA (2018)
Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. 25 (10) (2018)
James M. Hoffman, Josh F. Peterson, Naveen Muthu, Henry M. Dunnenberger
Preemptive Clinical Decision Support: Delivering Precise Information Clinicians Will Actually Use to Prevent Harm. AMIA (2018)
Laura K. Wiley, Jacob P. VanHouten, David Samuels, Melinda Aldrich, Dan M. Roden, Josh F. Peterson, Joshua C. Denny
Strategies for Equitable Pharmacogenomic-Guided Warfarin Dosing Among European and African American Individuals in a Clinical Population. PSB (2017)
Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo
Implementing Pharmacogenomic Clinical Decision Support: Design and Prescriber Response in the eMERGE Network. AMIA (2016)
James M. Hoffman, Henry M. Dunnenberger, Jonathan D. Burlison, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Stuart A. Scott, Josh F. Peterson, Heidi L. Rehm, Teri E. Klein, Mary V. Relling, Kelly E. Caudle
The Clinical Pharmacogenetics Implementation Consortium (CPIC) Term Standardization for Clinical Pharmacogenetic Test Results: Alleles and Phenotypes. CRI (2016)
James M. Hoffman, Henry M. Dunnenberger, J. Kevin Hicks, Kelly E. Caudle, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Teri E. Klein, Josh F. Peterson
Developing knowledge resources to support precision medicine: principles from the Clinical Pharmacogenetics Implementation Consortium (CPIC). J. Am. Medical Informatics Assoc. 23 (4) (2016)
Laura K. Wiley, Marc Beller, Julie Field, Josh F. Peterson, Joshua C. Denny
Evaluating Physician Response to Pharmacogenomic-Guided Warfarin Dosing in an Hospitalized Population. CRI (2016)
Robert M. Cronin, Jacob P. VanHouten, Edward D. Siew, Svetlana K. Eden, Stephan D. Fihn, Christopher D. Nielson, Josh F. Peterson, Clifton R. Baker, T. Alp Ikizler, Theodore Speroff, Michael E. Matheny
National Veterans Health Administration inpatient risk stratification models for hospital-acquired acute kidney injury. J. Am. Medical Informatics Assoc. 22 (5) (2015)
Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby
CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Josh F. Peterson, Marc S. Williams, Casey L. Overby, Robert R. Freimuth, Iftikhar J. Kullo
Public Implementation Resources for Genomic Medicine. AMIA (2015)
Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams
A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA (2014)
Laura K. Wiley, Josh F. Peterson, Joshua C. Denny, William S. Bush
Establishing the Need for Personalized Medicine: Simvastatin Exposure Among a SLCO1B1 Variant Population. AMIA (2013)
Ioana Danciu, Josh F. Peterson
Analyzing the Impact of Pharmacogenomics on Clinical Practice: A Visual Method. AMIA (2013)
Allison B. McCoy, Lemuel R. Waitman, Julia B. Lewis, Julie A. Wright, David P. Choma, Randolph A. Miller, Josh F. Peterson
Focus on health information technology, electronic health records and their financial impact: A framework for evaluating the appropriateness of clinical decision support alerts and responses. J. Am. Medical Informatics Assoc. 19 (3) (2012)
Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson
Extracting timing and status descriptors for colonoscopy testing from electronic medical records. J. Am. Medical Informatics Assoc. 17 (4) (2010)
Joshua C. Denny, Anderson Spickard III, Kevin B. Johnson, Neeraja B. Peterson, Josh F. Peterson, Randolph A. Miller
Research Paper: Evaluation of a Method to Identify and Categorize Section Headers in Clinical Documents. J. Am. Medical Informatics Assoc. 16 (6) (2009)
Joshua C. Denny, Randolph A. Miller, Lemuel R. Waitman, Mark Arrieta, Josh F. Peterson
Identifying QT prolongation from ECG impressions using a general-purpose Natural Language Processor. Int. J. Medical Informatics 78 (Supplement-1) (2009)
Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson
Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records. AMIA (2009)
Joshua C. Denny, Josh F. Peterson
Identifying QT prolongation from ECG impressions using Natural Language Processing and Negation Detection. MedInfo (2007)
Josh F. Peterson, Benjamin P. Rosenbaum, Lemuel R. Waitman, Ralf Habermann, James S. Powers, Debbie Harrell, Randolph A. Miller
Physicians' Response to Guided Geriatric Dosing: Initial Results from a Randomized Trial. MedInfo (2007)
Fern FitzHenry, Josh F. Peterson, Mark Arrieta, Lemuel R. Waitman, Jonathan S. Schildcrout, Randolph A. Miller
Research Paper: Medication Administration Discrepancies Persist Despite Electronic Ordering. J. Am. Medical Informatics Assoc. 14 (6) (2007)
Joshua C. Denny, Anderson Spickard III, Randolph A. Miller, Jonathan S. Schildcrout, Dawood Darbar, S. Trent Rosenbloom, Josh F. Peterson
Identifying UMLS concepts from ECG Impressions using Knowledge Map. AMIA (2005)
Fern FitzHenry, Josh F. Peterson, Mark Arrieta, Randolph A. Miller
Measuring the Quality of Medication Administration. AMIA (2005)
S. Trent Rosenbloom, Joseph Awad, Theodore Speroff, Peter L. Elkin, Russell L. Rothman, Anderson Spickard III, Josh F. Peterson, Brent A. Bauer, Dietlind Wahner-Roedler, Mark Lee, William M. Gregg, Kevin B. Johnson, Jim Jirjis, Mark Erlbaum, John S. Carter, Michael J. Lincoln, Steven H. Brown
Adequacy of representation of the National Drug File Reference Terminology Physiologic Effects reference hierarchy for commonly prescribed medications. AMIA (2003)
Harvey J. Murff, Alan J. Forster, Josh F. Peterson, Julie M. Fiskio, Heather L. Heiman, David W. Bates
Research Paper: Electronically Screening Discharge Summaries for Adverse Medical Events. J. Am. Medical Informatics Assoc. 10 (4) (2003)
Josh F. Peterson, Deborah H. Williams, Andrew C. Seger, Tejal K. Gandhi, David W. Bates
Poster Abstract: Drug-Lab Triggers Have Potential to Prevent Adverse Drug Events in Outpatients. J. Am. Medical Informatics Assoc. 9 (Supplement) (2002)
Harvey J. Murff, Alan J. Forster, Josh F. Peterson, Julie M. Fiskio, Heather L. Heiman, David W. Bates
Poster Abstract: Electronically Screening Discharge Summaries for Adverse Medical Events. J. Am. Medical Informatics Assoc. 9 (Supplement) (2002)
Josh F. Peterson, David W. Bates, Minal Patel, Jerry Avorn, Gilad J. Kuperman
Gerios: Recommending Drugs and Dosing for Elderly Patients. AMIA (2002)
Josh F. Peterson, Deborah H. Williams, Andy Seger, Tejal K. Gandhi, David W. Bates
Drug-Lab Triggers Have Potential to Prevent Adverse Drug Events in Outpatients. AMIA (2001)