Lisa Bastarache

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 20

Top Topics

Lessons Learned

Algorithmic Approaches

Electronic Health Records

Acute Coronary Syndrome

Top Venues

J. Am. Medical Informatics Assoc.

J. Heal. Informatics Res.

Publications

Chenjie Zeng, David J. Schlueter, Tam C. Tran, Anav Babbar, Thomas Cassini, Lisa Bastarache, Joshua C. Denny
Research Program against the US general population and the UK Biobank. J. Am. Medical Informatics Assoc. 31 (4) (2024)
Cathy Shyr, Yan Hu, Lisa Bastarache, Alex Cheng, Rizwan Hamid, Paul A. Harris, Hua Xu
Identifying and Extracting Rare Diseases and Their Phenotypes with Large Language Models. J. Heal. Informatics Res. 8 (2) (2024)
Megan M. Shuey, William W. Stead, Ida Aka, April L. Barnado, Lisa Bastarache, Elly Brokamp, Meredith Campbell, Robert J. Carroll, Jeffrey A. Goldstein, Adam Lewis, Beth A. Malow, Jonathan D. Mosley, Travis Osterman, Dolly A Padovani-Claudio, Andrea Ramirez, Dan M. Roden, Bryce A Schuler, Edward Siew, Jennifer Sucre, Isaac Thomsen, Rory J. Tinker, Sara Van Driest, Colin Walsh, Jeremy L. Warner, Quinn Stanton Wells, Lee E. Wheless
Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics. Bioinform. 39 (10) (2023)
David J. Schlueter, Lina M. Sulieman, Huan Mo, Jacob M. Keaton, Tracey M. Ferrara, Ariel Williams, Jun Qian, Onajia J. Stubblefield, Chenjie Zeng, Tam C. Tran, Lisa Bastarache, Jian Dai, Anav Babbar, Andrea Ramirez, Slavina Goleva, Joshua C. Denny
Research Program. J. Am. Medical Informatics Assoc. 31 (1) (2023)
William W. Stead, Adam Lewis, Nunzia B. Giuse, Taneya Y. Koonce, Lisa Bastarache
Knowledgebase strategies to aid interpretation of clinical correlation research. J. Am. Medical Informatics Assoc. 30 (7) (2023)
Layla Aref, Lisa Bastarache, Jacob J. Hughey
The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants. Bioinform. 38 (21) (2022)
Layla Aref, Lisa Bastarache, Jake Hughey
The PheRS R package: Phenotype risk score generation and analysis tool using electronic health record data. AMIA (2022)
Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. 29 (8) (2022)
Rebecca Irlmeier, Jacob J. Hughey, Lisa Bastarache, Joshua C. Denny, Qingxia Chen
Cox regression is robust to inaccurate EHR-extracted event time: an application to EHR-based GWAS. Bioinform. 38 (8) (2022)
Sarah DeLozier, Sarah Bland, Melissa McPheeters, Quinn S. Wells, Eric Farber-Eger, Cosmin Adrian Bejan, Daniel Fabbri, S. Trent Rosenbloom, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei, Josh F. Peterson, Lisa Bastarache
Phenotyping coronavirus disease 2019 during a global health pandemic: Lessons learned from the characterization of an early cohort. J. Biomed. Informatics 117 (2021)
Sarah DeLozier, Josh F. Peterson, Joshua C. Denny, Lisa Bastarache
Using Genomic Association Replication Rates as an EHR Quality Measure via the Phenotype-Genotype Reference Map (PGRM). AMIA (2021)
David J. Schlueter, Lina M. Sulieman, Jacob Keaton, Tracey Ferrara, Kyle Webb, Ariel Williams, Francis Ratsimbazafy, Jun Qian, Lisa Bastarache, Andrea H. Ramirez, Joshua C. Denny
Systematic replication of smoking disease associations in the All of Us Research Program. AMIA (2021)
Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. 28 (2) (2021)
Spiros C. Denaxas, Ge Liu, QiPing Feng, Ghazaleh Fatemifar, Lisa Bastarache, Vern Eric Kerchberger, Aroon D. Hingorani, R. Tom Lumbers, Josh F. Peterson, Wei-Qi Wei, Harry Hemingway
Mapping the Read2/CTV3 controlled clinical terminologies to Phecodes in UK Biobank primary care electronic health records: implementation and evaluation. AMIA (2021)
Leigh Anne Tang, Sarah DeLozier, Lisa Bastarache, Colin Walsh, Joshua C. Denny
Developing a Phenotype Risk Score for Opioid Adverse Events. AMIA (2020)
Lisa Bastarache, Jacob J. Hughey, Jeffery A. Goldstein, Julie A. Bastraache, Satya Das, Neil Charles Zaki, Chenjie Zeng, Leigh Anne Tang, Dan M. Roden, Joshua C. Denny
Improving the phenotype risk score as a scalable approach to identifying patients with Mendelian disease. J. Am. Medical Informatics Assoc. 26 (12) (2019)
Jeremy L. Warner, Guergana Savova, Noemie Elhadad, Lisa Bastarache, David Gotz
Computable Longitudinal Patient Trajectories. AMIA (2018)
Jamie R. Robinson, Lisa Bastarache, Robert J. Carroll, Elizabeth A. Scoville, David A. Schwartz, Joshua C. Denny
Sub-Phenotyping of Crohn's Disease Using a Large Electronic Record Cohort. AMIA (2017)
Jamie R. Robinson, Zongyang Mou, Lisa Bastarache, Wei-Qi Wei, Robert J. Carroll, Joshua C. Denny
Association of BMI and Obesity Genetic Risk Score with Surgical Procedures Through a Procedure-wide Association Study. AMIA (2017)
Pedro L. Teixeira, Wei-Qi Wei, Robert M. Cronin, Huan Mo, Jacob P. VanHouten, Robert J. Carroll, Eric LaRose, Lisa Bastarache, S. Trent Rosenbloom, Todd L. Edwards, Dan M. Roden, Thomas A. Lasko, Richard A. Dart, Anne M. Nikolai, Peggy L. Peissig, Joshua C. Denny
Evaluating electronic health record data sources and algorithmic approaches to identify hypertensive individuals. J. Am. Medical Informatics Assoc. 24 (1) (2017)
Yaomin Xu, Todd L. Edwards, Lisa Bastarache, Rebecca N. Jerome, Shilin Zho, Eric Torstenson, Wei-Qi Wei, Jana Shirey-Rice, Erica A. Bowton, Yu Shyr, Jill M. Pulley, Joshua C. Denny
PheWAS Network Analysis and Visualization. AMIA (2015)
Robert J. Carroll, Lisa Bastarache, Joshua C. Denny
R PheWAS: data analysis and plotting tools for phenome-wide association studies in the R environment. Bioinform. 30 (16) (2014)
Pedro L. Teixeira, Robert J. Carroll, Lisa Bastarache, Peter Speltz, Joshua C. Smith, Joshua C. Denny
Phenome-Wide Association Studies Using NLP-Derived Concepts. AMIA (2014)
Robert J. Carroll, Lisa Bastarache, Joshua C. Denny
Open Source R Implementation of the PheWAS Methodology. AMIA (2013)
Eugenia R. McPeek Hinz, Joshua C. Denny, Lisa Bastarache
A Natural Language Processing Algorithm to define a Venous Thromboembolism Phenotype. AMIA (2013)
Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny
Classifying ICD-9 codes into meaningful disease categories: A comparison between two coding systems. AMIA (2013)
Wei-Qi Wei, Robert M. Cronin, Hua Xu, Thomas A. Lasko, Lisa Bastarache, Joshua C. Denny
Development and evaluation of an ensemble resource linking medications to their indications. J. Am. Medical Informatics Assoc. 20 (5) (2013)
Christine M. McEvoy, Robert J. Carroll, Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny
Using PheWAS and Natural Language Processing to Discover Clinical Associations for Congenital Chest Deformities. AMIA (2013)
Wei-Qi Wei, Jonathan D. Mosley, Lisa Bastarache, Joshua C. Denny
Validation and Enhancement of a Computable Medication Indication Resource (MEDI) Using a Large Practice-based Dataset. AMIA (2013)
Eugenia R. McPeek Hinz, Lisa Bastarache, Joshua C. Denny
A General Purpose Phenotype Algorithm for Venous Thromboembolism Using Billing Codes and Natural Language Processing. HISB (2012)
Lisa Bastarache, Wei-Qi Wei, Joshua C. Denny
Diabetes and Susceptibility to Infection: A Study of Lab Culture Results in the EMR. AMIA (2012)
Wei-Qi Wei, Lisa Bastarache, Joshua C. Denny
Comparing Diagnoses Recorded in Problem Lists vs. Administrative Codes. AMIA (2012)
Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo
Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network. AMIA (2012)
Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson
Extracting timing and status descriptors for colonoscopy testing from electronic medical records. J. Am. Medical Informatics Assoc. 17 (4) (2010)
Joshua C. Denny, Marylyn D. Ritchie, Melissa A. Basford, Jill M. Pulley, Lisa Bastarache, Kristin Brown-Gentry, Deede Wang, Daniel R. Masys, Dan M. Roden, Dana C. Crawford
PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Bioinform. 26 (9) (2010)
Son Doan, Lisa Bastarache, Sergio Klimkowski, Joshua C. Denny, Hua Xu
Integrating existing natural language processing tools for medication extraction from discharge summaries. J. Am. Medical Informatics Assoc. 17 (5) (2010)
Joshua C. Denny, Lisa Bastarache, Elizabeth Ann Sastre, Anderson Spickard III
Tracking medical students' clinical experiences using natural language processing. J. Biomed. Informatics 42 (5) (2009)
Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson
Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records. AMIA (2009)