Isaac S. Kohane

ORCID

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 61

Top Venues

J. Am. Medical Informatics Assoc.

AMIA

CoRR

PSB

Publications

Amelia L. M. Tan, Rafael S. Gonçalves, William Yuan, Gabriel A. Brat, The Consortium for Clinical Characterization of COVID-19 by EHR, Robert Gentleman, Isaac S. Kohane
Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms. CoRR (2024)
Matthew B. A. McDermott, Bret Nestor, Peniel N. Argaw, Isaac S. Kohane
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events. NeurIPS (2023)
Matthew B. A. McDermott, Bret Nestor, Peniel Argaw, Isaac S. Kohane
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events. CoRR (2023)
Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine 5 (2022)
Dianbo Liu, Karmel W. Choi, Paulo Lizano, William Yuan, Kun-Hsing Yu, Jordan Smoller, Isaac S. Kohane
Construction of extra-large scale screening tools for risks of severe mental illnesses using real world healthcare data. CoRR (2022)
Peniel N. Argaw, Elizabeth Healey, Isaac S. Kohane
Identifying Heterogeneous Treatment Effects in Multiple Outcomes using Joint Confidence Intervals. CoRR (2022)
Vladimir I. Valtchinov, Shawn N. Murphy, Ronilda Lacson, Nikolay Ikonomov, Bingxue K. Zhai, Katherine P. Andriole, Justin F. Rousseau, Dick Hanson, Isaac S. Kohane, Ramin Khorasani
Analytics to monitor local impact of the Protecting Access to Medicare Act's imaging clinical decision support requirements. J. Am. Medical Informatics Assoc. 29 (11) (2022)
Xuan Wang, Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat, Clara-Lea Bonzel, Yuan Luo, Rui Duan, Nathan P. Palmer, Meghan R. Hutch, Alba Gutiérrez-Sacristán, Riccardo Bellazzi, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Noelia García-Barrio, Romain Griffier, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Mark S. Keller, Jeffrey G. Klann, Sehi L'Yi, Sara Lozano-Zahonero, Sarah Maidlow, Adeline Makoudjou, Alberto Malovini, Bertrand Moal, Jason H. Moore, Michele Morris, Danielle L. Mowery, Shawn N. Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S. Omenn, Lav P. Patel, Miguel Pedrera-Jiménez, Andrea Prunotto, Malarkodi J. Samayamuthu, Fernando J. Sanz Vidorreta, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Andrew M. South, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Patric Tippmann, Shyam Visweswaran, Zongqi Xia, William Yuan, Daniela Zöller, Isaac S. Kohane, Paul Avillach, Zijian Guo, Tianxi Cai
SurvMaximin: Robust federated approach to transporting survival risk prediction models. J. Biomed. Informatics 134 (2022)
Peniel N. Argaw, Elizabeth Healey, Isaac S. Kohane
Identifying Heterogeneous Treatment Effects in Multiple Outcomes using Joint Confidence Intervals. ML4H@NeurIPS (2022)
Griffin M. Weber, Chuan Hong, Zongqi Xia, Nathan P. Palmer, Paul Avillach, Sehi L'Yi, Mark S. Keller, Shawn N. Murphy, Alba Gutiérrez-Sacristán, Clara-Lea Bonzel, Arnaud Serret-Larmande, Antoine Neuraz, Gilbert S. Omenn, Shyam Visweswaran, Jeffrey G. Klann, Andrew M. South, Ne-Hooi Will Loh, Mario Cannataro, Brett K. Beaulieu-Jones, Riccardo Bellazzi, Giuseppe Agapito, Mario Alessiani, Bruce J. Aronow, Douglas S. Bell, Vincent Benoit, Florence T. Bourgeois, Luca Chiovato, Kelly Cho, Arianna Dagliati, Scott L. DuVall, Noelia García-Barrio, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Richard W. Issitt, Molei Liu, Yuan Luo, Kristine E. Lynch, Sarah Maidlow, Alberto Malovini, Kenneth D. Mandl, Chengsheng Mao, Michael E. Matheny, Jason H. Moore, Jeffrey S. Morris, Michele Morris, Danielle L. Mowery, Kee Yuan Ngiam, Lav P. Patel, Miguel Pedrera-Jiménez, Rachel B. Ramoni, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Anastasia Spiridou, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Carlo Torti, Enrico M. Trecarichi, Xuan Wang, James R. Aaron, Adem Albayrak, Giuseppe Albi, Anna Alloni, Danilo F. Amendola, François Angoulvant, Anthony L. L. J. Li, Fatima Ashraf, Andrew Atz, Paul Avillach, Paula S. Azevedo, James Balshi, Brett K. Beaulieu-Jones, Antonio Bellasi, Vincent Benoit, Michele Beraghi, José Luis Bernal-Sobrino, Mélodie Bernaux, Romain Bey, Surbhi Bhatnagar, Alvar Javier Blanco-Martínez, Martin Boeker, John Booth, Silvano Bosari, Robert L. Bradford, Gabriel A. Brat, Stéphane Bréant, Nicholas W. Brown, Raffaele Bruno, William A. Bryant, Mauro Bucalo, Emily Bucholz, Anita Burgun, Tianxi Cai, Aldo Carmona, Charlotte Caucheteux, Julien Champ, Krista Y. Chen, Jin Chen, Lorenzo Chiudinelli, Kelly Cho, James J. Cimino, Tiago K. Colicchio, Sylvie Cormont, Sébastien Cossin, Jean B. Craig, Juan Luis Cruz-Bermúdez, Jaime Cruz-Rojo, Mohamad Daniar, Christel Daniel, Priyam Das, Batsal Devkota, Audrey Dionne, Rui Duan, Julien Dubiel, Loic Esteve, Hossein Estiri, Shirley Fan, Robert W. Follett, Thomas Ganslandt, Noelia García-Barrio, Lana X. Garmire, Nils Gehlenborg, Emily J. Getzen, Alon Geva, Tobias Gradinger, Alexandre Gramfort, Romain Griffier, Nicolas Griffon, Olivier Grisel, Alba Gutiérrez-Sacristán, Larry Han, David A. Hanauer, Christian Haverkamp, Derek Y. Hazard, Bing He, Darren W. Henderson, Martin Hilka, Kenneth M. Huling, Meghan R. Hutch, Richard W. Issitt, Anne-Sophie Jannot, Vianney Jouhet, Ramakanth Kavuluru, Chris J. Kennedy, Kate F. Kernan, Daniel A. Key, Katie Kirchoff, Jeffrey G. Klann, Isaac S. Kohane, Ian D. Krantz, Detlef Kraska, Ashok K. Krishnamurthy, Trang T. Le, Judith Leblanc, Guillaume Lemaitre, Leslie Lenert, Damien Leprovost, Molei Liu, Qi Long, Sara Lozano-Zahonero, Sadiqa Mahmood, Sarah Maidlow, Adeline Makoudjou, Anupama Maram, Patricia Martel, Marcelo R. Martins, Jayson S. Marwaha, Aaron J. Masino, Maria Mazzitelli, Arthur Mensch, Marianna Milano, Marcos F. Minicucci, Bertrand Moal, Taha Mohseni Ahooyi, Jason H. Moore, Cinta Moraleda, Jeffrey S. Morris, Karyn L. Moshal, Sajad Mousavi, Douglas A. Murad, Shawn N. Murphy, Thomas Naughton, Carlos Tadeu Breda Neto, Jane Newburger, Kee Yuan Ngiam, Wanjiku F. M. Njoroge, James B. Norman, Jihad Obeid, Marina P. Okoshi, Karen L. Olson, Gilbert S. Omenn, Nina Orlova, Brian Ostasiewski, Nathan P. Palmer, Nicolas Paris, Lav P. Patel, Miguel Pedrera-Jiménez, Ashley C. Pfaff, Emily R. Pfaff, Danielle Pillion, Sara Pizzimenti, Hans-Ulrich Prokosch, Robson A. Prudente, Andrea Prunotto, Víctor Quirós-González, Rachel B. Ramoni, Maryna Raskin, Siegbert Rieg, Gustavo Roig-Domínguez, Pablo Rojo, Paula Rubio-Mayo, Paolo Sacchi, Carlos Sáez, Elisa Salamanca, Malarkodi Jebathilagam Samayamuthu, L. Nelson Sanchez-Pinto, Arnaud Sandrin, Nandhini Santhanam, Janaina C. C. Santos, Fernando J. Sanz Vidorreta, Maria Savino, Jürgen Schüttler, Luigia Scudeller, Neil J. Sebire, Pablo Serrano-Balazote, Patricia Serre, Arnaud Serret-Larmande, Mohsin Shah, Zahra Shakeri Hossein Abad, Domenick Silvio, Piotr Sliz, Jiyeon Son, Charles Sonday, Andrew M. South, Francesca Sperotto, Zachary H. Strasser, Amelia L. M. Tan, Bryce W. Q. Tan, Suzana E. Tanni, Deanne M. Taylor, Ana I. Terriza-Torres, Patric Tippmann, Emma M. S. Toh, Yi-Ju Tseng, Andrew K. Vallejos, Gaël Varoquaux, Margaret E. Vella, Guillaume Verdy, Jill-Jênn Vie, Shyam Visweswaran, Michele Vitacca, Kavishwar B. Wagholikar, Lemuel R. Waitman, Demian Wassermann, Griffin M. Weber, Martin Wolkewitz, Scott Wong, Zongqi Xia, Xin Xiong, Ye Ye, Nadir Yehya, William Yuan, Alberto Zambelli, Harrison G. Zhang, Daniela Zöller, Valentina Zuccaro, Chiara Zucco, Isaac S. Kohane, Tianxi Cai, Gabriel A. Brat
International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality. npj Digit. Medicine 5 (2022)
Miguel Pedrera-Jiménez, Noelia García-Barrio, Gema Hernandez-Ibarburu, Blanca Baselga, Alvar Javier Blanco-Martínez, Fernando Calvo-Boyero, Alba Gutiérrez-Sacristan, Víctor Quiros, Juan Luis Cruz-Bermúdez, José Luis Bernal-Sobrino, Laura Meloni, David Pérez-Rey, Matvey B. Palchuk, Isaac S. Kohane, Pablo Serrano
Building an i2b2-Based Population Repository for COVID-19 Research. MIE (2022)
Alba Gutiérrez-Sacristán, Carlos Sáez, Carlos De Niz, Niloofar Jalali, Thomas N. Desain, Ranjay Kumar, Joany M. Zachariasse, Kathe P. Fox, Nathan P. Palmer, Isaac S. Kohane, Paul Avillach
Multi-PheWAS intersection approach to identify sex differences across comorbidities in 59 140 pediatric patients with autism spectrum disorder. J. Am. Medical Informatics Assoc. 29 (2) (2022)
Hadi Amiri, Mitra Mohtarami, Isaac S. Kohane
Attentive Multiview Text Representation for Differential Diagnosis. ACL/IJCNLP (2) (2021)
Jeffrey G. Klann, Hossein Estiri, Griffin M. Weber, Bertrand Moal, Paul Avillach, Chuan Hong, Amelia L. M. Tan, Brett K. Beaulieu-Jones, Victor M. Castro, Thomas Maulhardt, Alon Geva, Alberto Malovini, Andrew M. South, Shyam Visweswaran, Michele Morris, Malarkodi J. Samayamuthu, Gilbert S. Omenn, Kee Yuan Ngiam, Kenneth D. Mandl, Martin Boeker, Karen L. Olson, Danielle L. Mowery, Robert W. Follett, David A. Hanauer, Riccardo Bellazzi, Jason H. Moore, Ne-Hooi Will Loh, Douglas S. Bell, Kavishwar B. Wagholikar, Luca Chiovato, Valentina Tibollo, Siegbert Rieg, Anthony L. L. J. Li, Vianney Jouhet, Emily Schriver, Zongqi Xia, Meghan Hutch, Yuan Luo, Isaac S. Kohane, Gabriel A. Brat, Shawn N. Murphy
Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Harrison G. Zhang, Boris P. Hejblum, Griffin M. Weber, Nathan P. Palmer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Katherine P. Liao, Isaac S. Kohane, Tianxi Cai
ATLAS: an automated association test using probabilistically linked health records with application to genetic studies. J. Am. Medical Informatics Assoc. 28 (12) (2021)
Samuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering, Scott L. Lipnick, Isaac S. Kohane
Cross-modal representation alignment of molecular structure and perturbation-induced transcriptional profiles. PSB (2021)
Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. 28 (2) (2021)
Josephine Yates, Alba Gutiérrez-Sacristán, Vianney Jouhet, Kimberly Leblanc, Cecilia Esteves, Thomas N. Desain, Nick Benik, Jason Stedman, Nathan P. Palmer, Guillaume Mellon, Isaac S. Kohane, Paul Avillach
Finding commonalities in rare diseases through the undiagnosed diseases network. J. Am. Medical Informatics Assoc. 28 (8) (2021)
William J. Gordon, Daniel Gottlieb, David A. Kreda, Joshua C. Mandel, Kenneth D. Mandl, Isaac S. Kohane
Patient-led data sharing for clinical bioinformatics research: USCDI and beyond. J. Am. Medical Informatics Assoc. 28 (10) (2021)
Brett K. Beaulieu-Jones, William Yuan, Gabriel A. Brat, Andrew L. Beam, Griffin M. Weber, Marshall Ruffin, Isaac S. Kohane
Machine learning for patient risk stratification: standing on, or looking over, the shoulders of clinicians? npj Digit. Medicine 4 (2021)
Inès Krissaane, Carlos De Niz, Alba Gutiérrez-Sacristán, Gabor Korodi, Nneka Ede, Ranjay Kumar, Jessica Lyons, Arjun K. Manrai, Chirag J. Patel, Isaac S. Kohane, Paul Avillach
Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services. J. Am. Medical Informatics Assoc. 27 (9) (2020)
Benjamin D. Wissel, P. J. Van Camp, Michal Kouril, Chad Weis, Tracy A. Glauser, Peter S. White, Isaac S. Kohane, Judith W. Dexheimer
An interactive online dashboard for tracking COVID-19 in U.S. counties, cities, and states in real time. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Luke A. D. Hutchison, Bonnie Berger, Isaac S. Kohane
Meta-analysis of Caenorhabditis elegans single-cell developmental data reveals multi-frequency oscillation in gene activation. Bioinform. 36 (13) (2020)
Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James J. Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L'Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutiérrez-Sacristán, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie Kirchoff, Jean B. Craig, Jihad Obeid, Vianney Jouhet, Romain Griffier, Sébastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans-Ulrich Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schiver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne-Sophie Jannot, Stéphane Bréant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Mélodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Esteve, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gaël Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew M. South, Tianxi Cai, Isaac S. Kohane
International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. npj Digit. Medicine 3 (2020)
Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks. J. Am. Medical Informatics Assoc. 27 (5) (2020)
Andrew L. Beam, Benjamin Kompa, Allen Schmaltz, Inbar Fried, Griffin M. Weber, Nathan P. Palmer, Xu Shi, Tianxi Cai, Isaac S. Kohane
Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data. PSB (2020)
Kun-Hsing Yu, Vincent Hu, Feiran Wang, Ursula Matulonis, George Mutter, Jeffrey Golden, Isaac S. Kohane
Deciphering Serous Ovarian Carcinoma Histopathology and Platinum Response by Convolutional Neural Networks. AMIA (2020)
Matthew B. A. McDermott, Jennifer Wang, Wen-Ning Zhao, Steven Sheridan, Peter Szolovits, Isaac S. Kohane, Stephen J. Haggarty, Roy H. Perlis
Deep Learning Benchmarks on L1000 Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (6) (2020)
Samuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering, Scott L. Lipnick, William Yuan, Isaac S. Kohane
Approaching Small Molecule Prioritization as a Cross-Modal Information Retrieval Task through Coordinated Representation Learning. CoRR (2019)
Hadi Amiri, Andrew Beam, Isaac S. Kohane
Learning to Estimate Nutrition Facts from Food Descriptions. AMIA (2019)
Brett K. Beaulieu-Jones, Isaac S. Kohane, Andrew L. Beam
Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes. PSB (2019)
Wenxin Ning, Stephanie Chan, Andrew Beam, Ming Yu, Alon Geva, Katherine P. Liao, Mary Mullen, Kenneth D. Mandl, Isaac S. Kohane, Tianxi Cai, Sheng Yu
Feature extraction for phenotyping from semantic and knowledge resources. J. Biomed. Informatics 91 (2019)
Judith Somekh, Shai S. Shen-Orr, Isaac S. Kohane
Batch correction evaluation framework using a-priori gene-gene associations: applied to the GTEx dataset. BMC Bioinform. 20 (1) (2019)
Luwan Zhang, Yichi Zhang, Tianrun A. Cai, Yuri Ahuja, Zeling He, Yuk-Lam Ho, Andrew Beam, Kelly Cho, Robert Carroll, Joshua C. Denny, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai
Automated grouping of medical codes via multiview banded spectral clustering. J. Biomed. Informatics 100 (2019)
Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Yichi Zhang, Yuk-Lam Ho, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, Christopher J. O'Donnell, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu
High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. J. Am. Medical Informatics Assoc. 26 (11) (2019)
Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane
Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks. AMIA (2019)
Samuel G. Finlayson, Hyunkwang Lee, Isaac S. Kohane, Luke Oakden-Rayner
Towards generative adversarial networks as a new paradigm for radiology education. CoRR (2018)
Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Lauren Costa, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, J. Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu, Tianxi Cai
High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS. AMIA (2018)
Andrew L. Beam, Benjamin Kompa, Inbar Fried, Nathan P. Palmer, Xu Shi, Tianxi Cai, Isaac S. Kohane
Clinical Concept Embeddings Learned from Massive Sources of Medical Data. CoRR (2018)
Alba Gutiérrez-Sacristán, Romain Guedj, Gabor Korodi, Jason Stedman, Laura Inés Furlong, Chirag J. Patel, Isaac S. Kohane, Paul Avillach
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. Bioinform. 34 (8) (2018)
Samuel G. Finlayson, Isaac S. Kohane, Andrew L. Beam
Adversarial Attacks Against Medical Deep Learning Systems. CoRR (2018)
Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai
Enabling phenotypic big data with PheNorm. J. Am. Medical Informatics Assoc. 25 (1) (2018)
Jennifer A. Sinnott, Fiona Cai, Sheng Yu, Boris P. Hejblum, Chuan Hong, Isaac S. Kohane, Katherine P. Liao
PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. J. Am. Medical Informatics Assoc. 25 (10) (2018)
Brett K. Beaulieu-Jones, Isaac S. Kohane, Andrew L. Beam
Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes. CoRR (2018)
Sheng Yu, Abhishek Chakrabortty, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai
Surrogate-assisted feature extraction for high-throughput phenotyping. J. Am. Medical Informatics Assoc. 24 (e1) (2017)
Shawn N. Murphy, Christopher D. Herrick, Michael Mendis, Lori C. Phillips, Wayne Chan, Alyssa J. Porter, Griffin M. Weber, Susanne E. Churchill, Isaac S. Kohane
Creating a Patient Information Commons from Multiple Research Informatics Platforms. CRI (2017)
Kun-Hsing Yu, Nathan P. Palmer, Isaac S. Kohane
Subtype Discovery for Autism Spectrum Disorder by Comorbidity Analysis. AMIA (2017)
Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai
High-throughput Phenotyping via Denoised Normal Mixture Transformation. AMIA (2017)
Jeremy L. Warner, Matthew J. Rioth, Kenneth D. Mandl, Joshua C. Mandel, David A. Kreda, Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao, Gil Alterovitz
SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. J. Am. Medical Informatics Assoc. 23 (4) (2016)
Cassandra Brady, Bahram Namjou, Stephanie Kennebeck, Jonathan Bickel, Nandan Patibandla, Yizhao Ni, Sara Van Driest, Lixin Chen, Ashton Roach, Beth Cobb, Jacqueline Kirby, Joshua C. Denny, Lisa Bailey-Davis, Marc S. Williams, Keith Marsolo, Imre Solti, Ingrid Holm, John Harley, Isaac S. Kohane, Guergana Savova, Nancy Crimmins, Todd Lingren, Vidhu Thaker
Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary Pediatric Medical Centers. Appl. Clin. Inform. 7 (03) (2016)
Adam S. Brown, Sek Won Kong, Isaac S. Kohane, Chirag J. Patel
ksRepo: a generalized platform for computational drug repositioning. BMC Bioinform. 17 (2016)
Uri Kartoun, Andrew Beam, Jennifer Pai, Arnaub Chatterjee, Timothy P. Fitzgerald, Isaac S. Kohane, Stanley Y. Shaw
The Spectrum of Insomnia-Associated Comorbidities in an Electronic Medical Records Cohort. AMIA (2016)
Joshua C. Mandel, David A. Kreda, Kenneth D. Mandl, Isaac S. Kohane, Rachel B. Ramoni
SMART on FHIR: a standards-based, interoperable apps platform for electronic health records. J. Am. Medical Informatics Assoc. 23 (5) (2016)
Judith Somekh, Mor Peleg, Alal Eran, Itay Koren, Ariel Feiglin, Alik Demishtein, Ruth Shiloh, Monika Heiner, Sek Won Kong, Zvulun Elazar, Isaac S. Kohane
A model-driven methodology for exploring complex disease comorbidities applied to autism spectrum disorder and inflammatory bowel disease. J. Biomed. Informatics 63 (2016)
Arjun K. Manrai, Brice L. Wang, Chirag J. Patel, Isaac S. Kohane
Reproducible and Shareable Quantifications of Pathogenicity. PSB (2016)
Arjun K. Manrai, Chirag J. Patel, Nils Gehlenborg, Nicholas P. Tatonetti, John P. A. Ioannidis, Isaac S. Kohane
Session Introduction. PSB (2016)
Efrat Muller, Alal Eran, Denis Agniel, Isaac S. Kohane, Eitan Bachmat
Characterizing the Fever Effect in Autism Spectrum Disorder. AMIA (2016)
Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane
SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Yizhao Ni, Jordan Wright, John Perentesis, Todd Lingren, Louise Deléger, Megan Kaiser, Isaac S. Kohane, Imre Solti
Increasing the efficiency of trial-patient matching: automated clinical trial eligibility Pre-screening for pediatric oncology patients. BMC Medical Informatics Decis. Mak. 15 (2015)
Uri Kartoun, Vishesh Kumar, Su-Chun Cheng, Sheng Yu, Katherine P. Liao, Elizabeth W. Karlson, Ashwin N. Ananthakrishnan, Zongqi Xia, Vivian S. Gainer, Andrew Cagan, Guergana Savova, Pei J. Chen, Shawn N. Murphy, Susanne E. Churchill, Isaac S. Kohane, Peter Szolovits, Tianxi Cai, Stanley Y. Shaw
Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records. AMIA (2015)
Sheng Yu, Katherine P. Liao, Stanley Y. Shaw, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai
Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources. J. Am. Medical Informatics Assoc. 22 (5) (2015)
David McCallie, Joshua C. Mandel, Stanley M. Huff, Kenneth D. Mandl, Isaac S. Kohane
Smart on FHIR. AMIA (2014)
Kenneth D. Mandl, Isaac S. Kohane, Douglas McFadden, Griffin M. Weber, Marc D. Natter, Joshua C. Mandel, Sebastian Schneeweiss, Sarah Weiler, Jeffrey G. Klann, Jonathan P. Bickel, William G. Adams, Yaorong Ge, Xiaobo Zhou, James Perkins, Keith Marsolo, Elmer V. Bernstam, John Showalter, Alexander Quarshie, Elizabeth O. Ofili, George Hripcsak, Shawn N. Murphy
Brief communication: Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture. J. Am. Medical Informatics Assoc. 21 (4) (2014)
John D. D'Amore, Joshua C. Mandel, David A. Kreda, Ashley Swain, George A. Koromia, Sumesh Sundareswaran, Liora Alschuler, Robert H. Dolin, Kenneth D. Mandl, Isaac S. Kohane, Rachel B. Ramoni
Are Meaningful Use Stage 2 certified EHRs ready for interoperability? Findings from the SMART C-CDA Collaborative. J. Am. Medical Informatics Assoc. 21 (6) (2014)
Marc Olano, Alan T. Sherman, Linda Oliva, Ryan Cox, Deborah Firestone, Oliver Kubik, Milind Patil, John Seymour, Isaac S. Kohane, Donna Thomas
SecurityEmpire: Development and Evaluation of a Digital Game to Promote Cybersecurity Education. 3GSE (2014)
Shawn N. Murphy, Nich Wattanasin, Susanne E. Churchill, Isaac S. Kohane, Vivian S. Gainer
Informatics for Integrating Biology and the Bedside (I2b2) Clinical Trials (CT) Patient Ascertainment Suite. AMIA (2014)
Nich Wattanasin, Michael Mendis, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy
Improving the Review of Individual Patients in a Clinical Data Repository. AMIA (2014)
Andrew J. McMurry, Britt Fitch, Guergana Savova, Isaac S. Kohane, Ben Y. Reis
Improved de-identification of physician notes through integrative modeling of both public and private medical text. BMC Medical Informatics Decis. Mak. 13 (2013)
Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1 (4) (2013)
Nich Wattanasin, Michael Mendis, Joshua C. Mandel, Rachel B. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy
Integrating the CCDA for Real-Time Patient Data in the i2b2 Platform. AMIA (2013)
Lori C. Phillips, Shawn N. Murphy, Isaac S. Kohane
Organization and Transformation of Next-Generation Sequencing Data for Use within i2b2. AMIA (2013)
Isaac S. Kohane, Vladimir I. Valtchinov
Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. Bioinform. 28 (4) (2012)
Patrick R. Schmid, Nathan P. Palmer, Isaac S. Kohane, Bonnie Berger
Making sense out of massive data by going beyond differential expression. Proc. Natl. Acad. Sci. USA 109 (15) (2012)
Daniel R. Masys, Gail P. Jarvik, Neil F. Abernethy, Nicholas R. Anderson, George J. Papanicolaou, Dina N. Paltoo, Mark A. Hoffman, Isaac S. Kohane, Howard P. Levy
Technical desiderata for the integration of genomic data into Electronic Health Records. J. Biomed. Informatics 45 (3) (2012)
Isaac S. Kohane, Vladimir I. Valtchinov
Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. Bioinform. 28 (6) (2012)
Kenneth D. Mandl, Joshua C. Mandel, Shawn N. Murphy, Elmer V. Bernstam, Rachel L. Ramoni, David A. Kreda, J. Michael McCoy, Ben Adida, Isaac S. Kohane
The SMART Platform: early experience enabling substitutable applications for electronic health records. J. Am. Medical Informatics Assoc. 19 (4) (2012)
Nich Wattanasin, Alyssa Porter, Stella Ubaha, Michael Mendis, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy
Apps to display patient data, making SMART available in the i2b2 platform. AMIA (2012)
Shawn N. Murphy, Michael Mendis, Nich Wattanasin, Alyssa Porter, Stella Ubaha, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane
Supporting Population Queries and Clinical Trials in i2b2 with SMART. AMIA (2012)
Isaac S. Kohane, Susanne E. Churchill, Shawn N. Murphy
A translational engine at the national scale: informatics for integrating biology and the bedside. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Nich Wattanasin, Alyssa Porter, Stella Ubaha, Michael Mendis, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy
Integrating Substitutable Medical Apps, Reusable Technologies (SMART) in the i2b2 Platform. AMIA (2012)
Susan L. Graham, Deborah Estrin, Eric Horvitz, Isaac S. Kohane, Elizabeth D. Mynatt, Ida Sim
Information Technology research challenges for healthcare: from discovery to delivery. SIGHIT Rec. 1 (1) (2011)
Fulvia Ferrazzi, Felix B. Engel, Erxi Wu, Annie P. Moseman, Isaac S. Kohane, Riccardo Bellazzi, Marco Ramoni
Inferring cell cycle feedback regulation from gene expression data. J. Biomed. Informatics 44 (4) (2011)
Shawn N. Murphy, Vivian S. Gainer, Michael Mendis, Susanne E. Churchill, Isaac S. Kohane
Strategies for maintaining patient privacy in i2b2. J. Am. Medical Informatics Assoc. 18 (Supplement) (2011)
Isaac S. Kohane, Peter Szolovits
Marco Ramoni: an appreciation of academic achievement. J. Am. Medical Informatics Assoc. 18 (4) (2011)
Shashank Agarwal, Hong Yu, Isaac S. Kohane
BioNOT: A searchable database of biomedical negated sentences. BMC Bioinform. 12 (2011)
Mark Y. Tong, Christopher A. Cassa, Isaac S. Kohane
Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations. Bioinform. 27 (6) (2011)
Jong-Min Lee, Jie Zhang, Andrew I. Su, John R. Walker, Tim Wiltshire, Kihwa Kang, Ella Dragileva, Tammy Gillis, Edith T. Lopez, Marie-Josee Boily, Michel Cyr, Isaac S. Kohane, James F. Gusella, Marcy E. MacDonald, Vanessa C. Wheeler
A novel approach to investigate tissue-specific trinucleotide repeat instability. BMC Syst. Biol. 4 (2010)
Ben Adida, Isaac S. Kohane, Kenneth D. Mandl
Practical Health Information Exchange using a Personally Controlled Health Record. HealthSec (2010)
Shawn N. Murphy, Griffin M. Weber, Michael Mendis, Vivian S. Gainer, Henry C. Chueh, Susanne E. Churchill, Isaac S. Kohane
Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2). J. Am. Medical Informatics Assoc. 17 (2) (2010)
m. c. schraefel, Paul André, Ryen White, Desney S. Tan, Tim Berners-Lee, Sunny Consolvo, Robert Jacobs, Isaac S. Kohane, Christopher A. Le Dantec, Lena Mamykina, Gary Marsden, Ben Shneiderman, Peter Szolovits, Daniel J. Weitzner
Interacting with eHealth: towards grand challenges for HCI. CHI Extended Abstracts (2009)
Peter J. Park, Sek Won Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane
Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. Bioinform. 25 (23) (2009)
Blanca E. Himes, Yi Dai, Isaac S. Kohane, Scott T. Weiss, Marco Ramoni
Research Paper: Prediction of Chronic Obstructive Pulmonary Disease (COPD) in Asthma Patients Using Electronic Medical Records. J. Am. Medical Informatics Assoc. 16 (3) (2009)
Griffin M. Weber, Shawn N. Murphy, Andrew J. McMurry, Douglas MacFadden, Daniel J. Nigrin, Susanne E. Churchill, Isaac S. Kohane
Application of Information Technology: The Shared Health Research Information Network (SHRINE): A Prototype Federated Query Tool for Clinical Data Repositories. J. Am. Medical Informatics Assoc. 16 (5) (2009)
Blanca E. Himes, Isaac S. Kohane, Marco Ramoni, Scott T. Weiss
Characterization of Patients who Suffer Asthma Exacerbations using Data Extracted from Electronic Medical Records. AMIA (2008)
Özlem Uzuner, Ira Goldstein, Yuan Luo, Isaac S. Kohane
Viewpoint Paper: Identifying Patient Smoking Status from Medical Discharge Records. J. Am. Medical Informatics Assoc. 15 (1) (2008)
Isaac S. Kohane, Özlem Uzuner
Letters to the Editor: No Structure Before Its Time. J. Am. Medical Informatics Assoc. 15 (5) (2008)
Shawn N. Murphy, Michael Mendis, Kristel Hackett, Rajesh Kuttan, Wensong Pan, Lori C. Phillips, Vivian S. Gainer, David Berkowicz, John P. Glaser, Isaac S. Kohane, Henry C. Chueh
Architecture of the Open-source Clinical Research Chart from Informatics for Integrating Biology and the Bedside. AMIA (2007)
Andrew J. McMurry, Clint A. Gilbert, Ben Y. Reis, Henry C. Chueh, Isaac S. Kohane, Kenneth D. Mandl
Model Formulation: A Self-scaling, Distributed Information Architecture for Public Health, Research, and Clinical Care. J. Am. Medical Informatics Assoc. 14 (4) (2007)
Voichita D. Marinescu, Isaac S. Kohane, Tae-Kyung Kim, David A. Harmin, Michael E. Greenberg, Alberto Riva
START: an automated tool for serial analysis of chromatin occupancy data. Bioinform. 22 (8) (2006)
Hidenori Inaoka, Yutaka Fukuoka, Isaac S. Kohane
germline. BMC Bioinform. 7 (2006)

Isaac S. Kohane.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Isaac S. Kohane