Jeremy L. Warner

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 30

Top Topics

Language Processing

Clinical Trials

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

Publications

Travis Zack, Jeremy L. Warner
Introducing a Comprehensive Score of Systemic Anticancer Treatment Relevance. MedInfo (2023)
Megan M. Shuey, William W. Stead, Ida Aka, April L. Barnado, Lisa Bastarache, Elly Brokamp, Meredith Campbell, Robert J. Carroll, Jeffrey A. Goldstein, Adam Lewis, Beth A. Malow, Jonathan D. Mosley, Travis Osterman, Dolly A Padovani-Claudio, Andrea Ramirez, Dan M. Roden, Bryce A Schuler, Edward Siew, Jennifer Sucre, Isaac Thomsen, Rory J. Tinker, Sara Van Driest, Colin Walsh, Jeremy L. Warner, Quinn Stanton Wells, Lee E. Wheless
Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics. Bioinform. 39 (10) (2023)
Shan Chen, Marco Guevara, Nicolas Ramirez, Arpi Murray, Jeremy L. Warner, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman
Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy. CoRR (2023)
Elmer V. Bernstam, Jeremy L. Warner, John C. Krauss, Edward P. Ambinder, Wendy S. Rubinstein, George Komatsoulis, Robert S. Miller, James L. Chen
Quantitating and assessing interoperability between electronic health records. J. Am. Medical Informatics Assoc. 29 (5) (2022)
Liwei Wang, Sunyang Fu, Andrew Wen, Xiaoyang Ruan, Huan He, Sijia Liu, Sungrim Moon, Michelle Mai, Irbaz Bin Riaz, Nan Wang, Ping Yang, Hua Xu, Jeremy L. Warner, Hongfang Liu
Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing. ICHI (2022)
Harry Hochheiser, Sean Finan, Zhou Yuan, John Levander, Eric B. Durbin, Isaac Hands, Ramakanth Kavuluru, Jeremy L. Warner, Guergana Savova
DeepPhe: Natural Language Processing Tools for Cancer Research and Surveillance. AMIA (2022)
Neil S. Zheng, Jeremy L. Warner, Travis J. Osterman, Quinn S. Wells, Xiao-Ou Shu, Stephen A. Deppen, Seth J. Karp, Shon Dwyer, QiPing Feng, Nancy J. Cox, Josh F. Peterson, C. Michael Stein, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei
A retrospective approach to evaluating potential adverse outcomes associated with delay of procedures for cardiovascular and cancer-related diagnoses in the context of COVID-19. J. Biomed. Informatics 113 (2021)
Nathan D. Seligson, Jeremy L. Warner, William S. Dalton, David Martin, Robert S. Miller, Debra Patt, Kenneth L. Kehl, Matvey B. Palchuk, Gil Alterovitz, Laura K. Wiley, Ming Huang, Feichen Shen, Yanshan Wang, Khoa A. Nguyen, Anthony F. Wong, Funda Meric-Bernstam, Elmer V. Bernstam, James L. Chen
Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity. J. Am. Medical Informatics Assoc. 27 (11) (2020)
Danielle Bitterman, Timothy A. Miller, David Harris, Chen Lin, Sean Finan, Jeremy L. Warner, Raymond Mak, Guergana Savova
Extracting Relations between Radiotherapy Treatment Details. ClinicalNLP@EMNLP (2020)
Ergin Soysal, Jeremy L. Warner, Jingqi Wang, Min Jiang, Krysten Harvey, Sandeep Kumar Jain, Xiao Dong, Hsing-yi Song, Harish Siddhanamatha, Liwei Wang, Qi Dai, Qingxia Chen, Xianglin Du, Cui Tao, Ping Yang, Joshua Charles Denny, Hongfang Liu, Hua Xu
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP. MedInfo (2019)
Elmer V. Bernstam, Jeremy L. Warner, John C. Krauss, Edward P. Ambinder, Wendy S. Rubinstein, George Komatsoulis, Robert S. Miller, James Chen
Continuum of Interoperability in Oncology EHR Implementations. AMIA (2019)
Zachary H. Moldwin, Harry Hochheiser, Jeremy L. Warner
HemOnc.org: Evaluation of Information Models for Cancer Therapy Representation. AMIA (2019)
Zhijun Yin, Jeremy L. Warner, Qingxia Chen, Bradley A. Malin
Patient Messaging Content Associated with Initiating Hormonal Therapy after a Breast Cancer Diagnosis. AMIA (2019)
Yaa A. Kumah-Crystal, Liz Salmi, Chethan Sarabu, Jeffery Smith, Jeremy L. Warner
Flipping Clinical Documentation on its Head. AMIA (2019)
Jeremy L. Warner, Dmitry Dymshyts, Christian G. Reich, Michael J. Gurley, Harry Hochheiser, Zachary H. Moldwin, Rimma Belenkaya, Andrew E. Williams, Peter C. Yang
HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model. J. Biomed. Informatics 96 (2019)
Jeremy L. Warner, Samuel M. Rubinstein, Julie Wu, Emmanuel A. Santillana, Suresh K. Bhavnani
Exploring Mutational Heterogeneity in the GENIE Tumor Database Using Visual Analytics. AMIA (2018)
Krysten Harvey, Andrew M. Malty, Samuel M. Rubinstein, Jeremy L. Warner
connecTPL: A Tool for Connecting Drugs and Publications to their Clinical Trials. AMIA (2018)
Zhijun Yin, Jeremy L. Warner, Bradley A. Malin
Learning When Communications Between Healthcare Providers Indicate Hormonal Therapy Medication Discontinuation. AMIA (2018)
Zhijun Yin, Morgan Harrell, Jeremy L. Warner, Qingxia Chen, Daniel Fabbri, Bradley A. Malin
The therapy is making me sick: how online portal communications between breast cancer patients and physicians indicate medication discontinuation. J. Am. Medical Informatics Assoc. 25 (11) (2018)
Jeremy L. Warner, Guergana Savova, Noemie Elhadad, Lisa Bastarache, David Gotz
Computable Longitudinal Patient Trajectories. AMIA (2018)
Suresh K. Bhavnani, Archana Ayyaswami, Tianlong Chen, Jeremy L. Warner
Identification of Patient Subgroups in Metastatic Breast Cancer Patients Based on Somatic Copy Number Alterations: A Bipartite Network Analysis. AMIA (2017)
Sandeep Kumar Jain, Maryam Rahimian, Robin M. Joyce, Jessica A. Zerillo, Jeremy L. Warner
Using network graphs to visualize changing documentation styles in an oncology practice before and after opennotes implementation. VAHC (2017)
Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu
Identifying Metastases related Information from Pathology Reports of Lung Cancer Patients. CRI (2017)
Zhijun Yin, Bradley A. Malin, Jeremy L. Warner, Pei-Yun Sabrina Hsueh, Ching-Hua Chen
The Power of the Patient Voice: Learning Indicators of Treatment Adherence From An Online Breast Cancer Forum. ICWSM (2017)
Jeremy L. Warner, Matthew J. Rioth, Kenneth D. Mandl, Joshua C. Mandel, David A. Kreda, Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao, Gil Alterovitz
SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. J. Am. Medical Informatics Assoc. 23 (4) (2016)
Matthew J. Rioth, Ramya Thota, David B. Staggs, Douglas B. Johnson, Jeremy L. Warner
Pragmatic precision oncology: the secondary uses of clinical tumor molecular profiling. J. Am. Medical Informatics Assoc. 23 (4) (2016)
Jeremy L. Warner, Lucy Wang, William Pao, Jeffrey A. Sosman, Ravi V. Atreya, Pam Carney, Mia A. Levy
CUSTOM-SEQ: a prototype for oncology rapid learning in a comprehensive EHR environment. J. Am. Medical Informatics Assoc. 23 (4) (2016)
Jeremy L. Warner, Peijin Zhang, Jenny Liu, Gil Alterovitz
Classification of hospital acquired complications using temporal clinical information from a large electronic health record. J. Biomed. Informatics 59 (2016)
Jesus Caban, Adam Perer, Uba Backonja, Jeremy L. Warner, Shira Fischer
Workshop on Visual Analytics in Healthcare. AMIA (2016)
Wei-Qi Wei, Pedro L. Teixeira, Huan Mo, Robert M. Cronin, Jeremy L. Warner, Joshua C. Denny
Combining billing codes, clinical notes, and medications from electronic health records provides superior phenotyping performance. J. Am. Medical Informatics Assoc. 23 (e1) (2016)
Jeremy L. Warner, Suzanne E. Maddux, Kevin S. Hughes, John C. Krauss, Peter Paul Yu, Lawrence N. Shulman, Deborah K. Mayer, Mike Hogarth, Mark Shafarman, Allison Stover Fiscalini, Laura Esserman, Liora Alschuler, George A. Koromia, Zabrina Gonzaga, Edward P. Ambinder
Development, implementation, and initial evaluation of a foundational open interoperability standard for oncology treatment planning and summarization. J. Am. Medical Informatics Assoc. 22 (3) (2015)
Matthew J. Rioth, Jeremy L. Warner
Visualizing High Dimensional Clinical and Tumor Genotyping Data. AMIA (2015)
Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz
Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization. J. Am. Medical Informatics Assoc. 22 (2) (2015)
Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane
SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Hua Xu, Melinda C. Aldrich, Qingxia Chen, Hongfang Liu, Neeraja B. Peterson, Qi Dai, Mia A. Levy, Anushi Shah, Han Xue, Xiaoyang Ruan, Min Jiang, Ying Li, Jamii St Julien, Jeremy L. Warner, Carol Friedman, Dan M. Roden, Joshua C. Denny
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality. J. Am. Medical Informatics Assoc. 22 (1) (2015)
Hua Xu, Qingxia Chen, Jeremy L. Warner, Han Xue, Min Jiang, Anushi Shah, Melinda Aldrich, Qi Dai, Joshua C. Denny
Mining electronic health record data to detect drug-repurposing signals for cancers. AMIA (2014)
Robert J. Carroll, Jeremy L. Warner, Anne E. Eyler, Charles Moore, Jayanth Doss, Katherine P. Liao, Robert M. Plenge, Joshua C. Denny
PheWAS and Genetics Define Subphenotypes in Drug Response. AMIA (2014)
Wei-Qi Wei, Pedro L. Teixeira, Huan Mo, Robert M. Cronin, Jeremy L. Warner, Joshua C. Denny
Evaluation of Diagnosis Codes, Clinical Notes, and Medications on Identifying Subjects with a Specific Disease Phenotype. AMIA (2014)
Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu
Identifying Metastases from Pathology Reports in Lung Cancer Patients. AMIA (2014)
Jeremy L. Warner, Peter C. Yang, Gil Alterovitz
Automated Synthesis and Visualization of a Chemotherapy Treatment Regimen Network. MedInfo (2013)
Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz
Analytic Approaches to Phenotypic Complexity. MedInfo (2013)
Jeremy L. Warner, Gil Alterovitz, Kelly Bodio, Robin M. Joyce
Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma. J. Am. Medical Informatics Assoc. 20 (4) (2013)
Jeremy L. Warner, Quan Ding, David A. Kreda, Zi'ou Zheng, Keshav Gupta, Joshua C. Denny, Gil Alterovitz
Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information. AMIA (2013)
Michael Gao, Jeremy L. Warner, Peter C. Yang, Gil Alterovitz
Constructing a Novel Cancer Ontology. AMIA (2013)
Jeremy L. Warner, Gil Alterovitz, Joshua C. Denny, Robert Fassett, Kevin S. Hughes
Sharing of Genomic Information: Perspectives from Stakeholders. AMIA (2013)
Jeremy L. Warner, Gil Alterovitz
Phenome-Based Analysis as a Means for Discovering Context-Dependent Clinical Reference Ranges. AMIA (2012)
Jeremy L. Warner, Peter Anick, Kenneth Roach, Nianwen Xue, Robin M. Joyce, Charles Safran, Pengyu Hong
Towards an Annotation Schema for Cancer Trajectory State Detection. AMIA (2012)