Liwei Wang

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 62

Top Topics

Natural Language

Adverse Drug Reactions

Electronic Health Records

Top Venues

J. Biomed. Informatics

J. Am. Medical Informatics Assoc.

Publications

Qiuhao Lu, Rui Li, Andrew Wen, Jinlian Wang, Liwei Wang, Hongfang Liu
Large Language Models Struggle in Token-Level Clinical Named Entity Recognition. CoRR (2024)
Sunyang Fu, Heling Jia, Maria Vassilaki, Vipina Kuttichi Keloth, Yifang Dang, Yujia Zhou, Muskan Garg, Ronald C. Petersen, Jennifer St Sauver, Sungrim Moon, Liwei Wang, Andrew Wen, Fang Li, Hua Xu, Cui Tao, Jungwei Fan, Hongfang Liu, Sunghwan Sohn
FedFSA: Hybrid and federated framework for functional status ascertainment across institutions. J. Biomed. Informatics 152 (2024)
Zenghui Lin, Xintong Liu, Nan Wang, Ruichen Li, Qingao Liu, Jingying Ma, Liwei Wang, Yan Wang, Shenda Hong
Deep Learning with Information Fusion and Model Interpretation for Health Monitoring of Fetus based on Long-term Prenatal Electronic Fetal Heart Rate Monitoring Data. CoRR (2024)
Sunyang Fu, Liwei Wang, Huan He, Andrew Wen, Nansu Zong, Anamika Kumari, Feifan Liu, Sicheng Zhou, Rui Zhang, Chenyu Li, Yanshan Wang, Jennifer St Sauver, Hongfang Liu, Sunghwan Sohn
A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. J. Am. Medical Informatics Assoc. 31 (7) (2024)
Xiaoyang Ruan, Liwei Wang, Charat Thongprayoon, Wisit Cheungpasitporn, Hongfang Liu
GRU-D-Weibull: A novel real-time individualized endpoint prediction. Artif. Intell. Medicine 146 (2023)
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30 (12) (2023)
Andrew Wen, Huan He, Sunyang Fu, Sijia Liu, Kurt Miller, Liwei Wang, Kirk E. Roberts, Steven Bedrick, William R. Hersh, Hongfang Liu
The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era. npj Digit. Medicine 6 (2023)
Sicheng Zhou, Nan Wang, Liwei Wang, Hongfang Liu, Rui Zhang
CancerBERT: a cancer domain-specific language model for extracting breast cancer phenotypes from electronic health records. J. Am. Medical Informatics Assoc. 29 (7) (2022)
Xiaoyang Ruan, Liwei Wang, Michelle Mai, Charat Thongprayoon, Wisit Cheungpasitporn, Hongfang Liu
Discrimination, calibration, and point estimate accuracy of GRU-D-Weibull architecture for real-time individualized endpoint prediction. CoRR (2022)
Huan He, Sunyang Fu, Liwei Wang, Andrew Wen, Sijia Liu, Hongfang Liu
MedTator: A Serverless Web-based Tool for Corpus Annotation. ICHI (2022)
Liwei Wang, Sunyang Fu, Andrew Wen, Xiaoyang Ruan, Huan He, Sijia Liu, Sungrim Moon, Michelle Mai, Irbaz Bin Riaz, Nan Wang, Ping Yang, Hua Xu, Jeremy L. Warner, Hongfang Liu
Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing. ICHI (2022)
Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. 13 (1) (2022)
Nansu Zong, Andrew Wen, Sungrim Moon, Sunyang Fu, Liwei Wang, Yiqing Zhao, Yue Yu, Ming Huang, Yanshan Wang, Gang Zheng, Michelle M. Mielke, James R. Cerhan, Hongfang Liu
Computational drug repurposing based on electronic health records: a scoping review. npj Digit. Medicine 5 (2022)
Huan He, Sunyang Fu, Liwei Wang, Sijia Liu, Andrew Wen, Hongfang Liu
MedTator: a serverless annotation tool for corpus development. Bioinform. 38 (6) (2022)
Andrew Wen, Liwei Wang, Huan He, Sijia Liu, Sunyang Fu, Sunghwan Sohn, Jacob A. Kugel, Vinod C. Kaggal, Ming Huang, Yanshan Wang, Feichen Shen, Jungwei Fan, Hongfang Liu
An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses. J. Biomed. Informatics 113 (2021)
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR (2021)
Ming Huang, Aditya Khurana, George M. Mastorakos, Andrew Wen, Huan He, Liwei Wang, Sijia Liu, Yanshan Wang, Julie Prigge, Brian Costello, Nilay D. Shah, Henry Ting, Christi Patten, Jungwei Fan, Hongfang Liu
Patient Asynchronous Response to Coronavirus Disease 2019 (COVID-19): A Retrospective Analysis of Patient Portal Messages. AMIA (2021)
Fang Li, Jingcheng Du, Yongqun He, Hsing-yi Song, Mohcine Madkour, Guozheng Rao, Yang Xiang, Yi Luo, Henry W. Chen, Sijia Liu, Liwei Wang, Hongfang Liu, Hua Xu, Cui Tao
Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Yanshan Wang, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
MedSTS: a resource for clinical semantic textual similarity. Lang. Resour. Evaluation 54 (1) (2020)
Sunyang Fu, David Chen, Huan He, Sijia Liu, Sungrim Moon, Kevin J. Peterson, Feichen Shen, Liwei Wang, Yanshan Wang, Andrew Wen, Yiqing Zhao, Sunghwan Sohn, Hongfang Liu
Clinical concept extraction: A methodology review. J. Biomed. Informatics 109 (2020)
Vanessa L. Kronzer, Liwei Wang, Hongfang Liu, John M. Davis III, Jeffrey A. Sparks, Cynthia S. Crowson
Investigating the impact of disease and health record duration on the eMERGE algorithm for rheumatoid arthritis. J. Am. Medical Informatics Assoc. 27 (4) (2020)
Feichen Shen, Yiqing Zhao, Liwei Wang, Majid Rastegar-Mojarad, Yanshan Wang, Sijia Liu, Hongfang Liu
Rare disease knowledge enrichment through a data-driven approach. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
Liwei Wang, Lei Luo, Yanshan Wang, Jason A. Wampfler, Ping Yang, Hongfang Liu
Information Extraction for Populating Lung Cancer Clinical Research Data. ICHI (2019)
Liwei Wang, Lei Luo, Yanshan Wang, Jason A. Wampfler, Ping Yang, Hongfang Liu
Natural language processing for populating lung cancer clinical research data. BMC Medical Informatics Decis. Mak. (5) (2019)
Cong Liu, Casey N. Ta, James R. Rogers, Ziran Li, Junghwan Lee, Alex M. Butler, Ning Shang, Fabricio Sampaio Peres Kury, Liwei Wang, Feichen Shen, Hongfang Liu, Lyudmila Ena, Carol Friedman, Chunhua Weng
Ensembles of natural language processing systems for portable phenotyping solutions. J. Biomed. Informatics 100 (2019)
Feichen Shen, Suyuan Peng, Yadan Fan, Andrew Wen, Sijia Liu, Yanshan Wang, Liwei Wang, Hongfang Liu
HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology. J. Biomed. Informatics 96 (2019)
Jun Jiang, Shumao Pang, Xia Zhao, Liwei Wang, Andrew Wen, Hongfang Liu, Qianjin Feng
Cross-lingual Data Transformation and Combination for Text Classification. CoRR (2019)
Yanshan Wang, Sunghwan Sohn, Sijia Liu, Feichen Shen, Liwei Wang, Elizabeth J. Atkinson, Shreyasee Amin, Hongfang Liu
A clinical text classification paradigm using weak supervision and deep representation. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
Sijia Liu, Yanshan Wang, Andrew Wen, Liwei Wang, Na Hong, Feichen Shen, Steven Bedrick, William R. Hersh, Hongfang Liu
CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model. CoRR (2019)
Liwei Wang, Jason A. Wampfler, Angela Dispenzieri, Hua Xu, Ping Yang, Hongfang Liu
Achievability to Extract Specific Date Information for Cancer Research. AMIA (2019)
Liwei Wang, Yanshan Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
Discovering associations between problem list and practice setting. BMC Medical Informatics Decis. Mak. (3) (2019)
Sunyang Fu, David Chen, Sijia Liu, Sungrim Moon, Kevin J. Peterson, Feichen Shen, Yanshan Wang, Liwei Wang, Andrew Wen, Yiqing Zhao, Sunghwan Sohn, Hongfang Liu
Development of Clinical Concept Extraction Applications: A Methodology Review. CoRR (2019)
Liwei Wang, Suzette J. Bielinski, Paul A. Decker, Jill M. Killian, Nicholas B. Larson, Rui Zhang, Hongfang Liu
Association between Cardiotoxic Chemotherapy and Myocardial Infarction. AMIA (2019)
Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sungrim Moon, Feichen Shen, Naveed Afzal, Sijia Liu, Yuqun Zeng, Saeed Mehrabi, Sunghwan Sohn, Hongfang Liu
Clinical information extraction applications: A literature review. J. Biomed. Informatics 77 (2018)
Yanshan Wang, Sunghwan Sohn, Sijia Liu, Feichen Shen, Liwei Wang, Elizabeth J. Atkinson, Shreyasee Amin, Hongfang Liu
A Deep Representation Empowered Distant Supervision Paradigm for Clinical Information Extraction. CoRR (2018)
Yanshan Wang, Sijia Liu, Naveed Afzal, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Paul R. Kingsbury, Hongfang Liu
A comparison of word embeddings for the biomedical natural language processing. J. Biomed. Informatics 87 (2018)
Su-Yuan Peng, Yadan Fan, Liwei Wang, Andrew Wen, Xusheng Liu, Hongfang Liu, Feichen Shen
Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic Syndrome. BIBM (2018)
Yanshan Wang, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
MedSTS: A Resource for Clinical Semantic Textual Similarity. CoRR (2018)
Liwei Wang, Yanshan Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu
Predicting Practice Setting Using Topic Modeling. ICHI Workshops (2018)
Liwei Wang, Lei Luo, Yanshan Wang, Jason A. Wampfler, Ping Yang, Hongfang Liu
Information Extraction for Data Population in Lung Cancer Clinical Research. AMIA (2018)
Yanshan Wang, Sijia Liu, Naveed Afzal, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Paul R. Kingsbury, Hongfang Liu
A Comparison of Word Embeddings for the Biomedical Natural Language Processing. CoRR (2018)
Sijia Liu, Liwei Wang, Sunghwan Sohn, Liping Xia, Hongfang Liu
ARETA: A Corpus for Asthma Related Event Temporal Association. AMIA (2018)
Feichen Shen, Sijia Liu, Yanshan Wang, Liwei Wang, Andrew Wen, Andrew H. Limper, Hongfang Liu
Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement. ICHI Workshops (2018)
Liwei Wang, Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Yanshan Wang, Hongfang Liu
Identification of Genetic Causality Statements in Medline Abstracts Leveraging Distant Supervision. ICHI Workshops (2018)
Majid Rastegar-Mojarad, Sijia Liu, Yanshan Wang, Naveed Afzal, Liwei Wang, Feichen Shen, Sunyang Fu, Hongfang Liu
BioCreative/OHNLP Challenge 2018. BCB (2018)
Yanshan Wang, Sijia Liu, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Fei Liu, Hongfang Liu
Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature. BCB (2017)
Naveed Afzal, Yanshan Wang, Feichen Shen, Liwei Wang, Hongfang Liu
A Resource for Clinical Semantic Textual Similarity. AMIA (2017)
Yanshan Wang, Naveed Afzal, Liwei Wang, Feichen Shen, Hongfang Liu
Semantic Representations of Medical Terms: A Comparison Study of Word Embeddings Trained on Clinical Notes and PubMed Articles. AMIA (2017)
Majid Rastegar-Mojarad, Sunghwan Sohn, Liwei Wang, Feichen Shen, Troy C. Bleeker, William A. Cliby, Hongfang Liu
Need of informatics in designing interoperable clinical registries. Int. J. Medical Informatics 108 (2017)
Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sijia Liu, Feichen Shen, Hongfang Liu
Content Analysis of Free-Text Family History. CRI (2017)
Feichen Shen, Sijia Liu, Yanshan Wang, Liwei Wang, Naveed Afzal, Hongfang Liu
Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis. AMIA (2017)
Yuqun Zeng, Yanshan Wang, Feichen Shen, Sijia Liu, Liwei Wang, Majid Rastegar-Mojarad, Xusheng Liu, Hongfang Liu
Recommending education materials for diabetic questions using information retrieval approaches. AMIA (2017)
Feichen Shen, Liwei Wang, Hongfang Liu
Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology. MedInfo (2017)
Feichen Shen, Sijia Liu, Yanshan Wang, Liwei Wang, Naveed Afzal, Hongfang Liu
Accelerating Rare Disease Diagnosis with Collaborative Filtering. AMIA (2017)
Sijia Liu, Liwei Wang, Donna M. Ihrke, Vipin Chaudhary, Cui Tao, Chunhua Weng, Hongfang Liu
Correlating Lab Test Results in Clinical Notes with Structured Lab Data: A Case Study in HbA1c and Glucose. CRI (2017)
Feichen Shen, Liwei Wang, Hongfang Liu
Using Human Phenotype Ontology for Phenotypic Analysis of Clinical Notes. MedInfo (2017)
Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Liwei Wang, Rashmi Prasad, Hongfang Liu
Prioritizing Adverse Drug Reaction and Drug Repositioning Candidates Generated by Literature-Based Discovery. BCB (2016)
Yuqun Zeng, Liwei Wang, Yanshan Wang, Dingcheng Li, Hongfang Liu
Answering patients' questions using expert-vetted online resources: A case study of diabetes. AMIA (2016)
Yuqun Zeng, Xusheng Liu, Liwei Wang, Hongfang Liu, Yanshan Wang
Answering diabetic patients' questions using expert-vetted online resources: A case study. BIBM (2016)
Liwei Wang, Dingcheng Li, Majid Rastegar-Mojarad, Hongfang Liu
Discovering Associations between Problem List and Practice Setting. AMIA (2016)
Mei Li, Yuying Cao, Liwei Wang, Hongfang Liu, Yongqun He
Ontology-Based Analysis of Adverse Drug Reactions Associated with Anti-infection Drugs in China. AMIA (2016)
Sijia Liu, Vipin Chaudhary, Liwei Wang, Hongfang Liu
LabLinker: Finding Links of Laboratory Test Results between Structured Records and Clinical Notes. ICHI (2016)
Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu
Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. BioData Min. 8 (2015)
Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu
Cancer Based Pharmacogenomics Network for Drug Repurposing. PAKDD Workshops (2014)
Liwei Wang, Guoqian Jiang, Dingcheng Li, Hongfang Liu
Standardizing adverse drug event reporting data. J. Biomed. Semant. 5 (2014)
Liwei Wang, Guoqian Jiang, Dingcheng Li, Hongfang Liu
Standardizing Drug Adverse Event Reporting Data. MedInfo (2013)
Dingcheng Li, Liwei Wang, Cui Tao, Christopher G. Chute, Hongfang Liu
Coreference Resolution from Medical Corpus with Topic Modeling. AMIA (2013)
Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute
Standardized Drug and Pharmacological Class Network Construction. VDOS+DO@ICBO (2013)
Liwei Wang, Hongfang Liu
Profiling adverse drug events of cancer drug ingredients using normalized AERS data. BIBM (2013)
Guoqian Jiang, Liwei Wang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute
Building a Knowledge Base of Severe Adverse Drug Events Based on AERS Reporting Data Using Semantic Web Technologies. MedInfo (2013)
Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute
Standardized Drug and Pharmacological Class Network Construction. MedInfo (2013)
Liwei Wang, Guoqian Jiang, Wei Wang, Hongfang Liu
A Preliminary Study on Normalizing AERS Drug Names Using RxNorm. AMIA (2012)