Casey N. Ta

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 22

Top Topics

Data Representation

Natural Language Processing

Recurrent Neural Networks

Electronic Health Records

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

Publications

Jimyung Park, Yilu Fang, Casey N. Ta, Gongbo Zhang, Betina Idnay, Fangyi Chen, David Feng, Rebecca Shyu, Emily R. Gordon, Matthew E. Spotnitz, Chunhua Weng
Criteria2Query 3.0: Leveraging generative large language models for clinical trial eligibility query generation. J. Biomed. Informatics 154 (2024)
Kayla Schiffer-Kane, Cong Liu, Tiffany J. Callahan, Casey N. Ta, Jordan G. Nestor, Chunhua Weng
Converting OMOP CDM to phenopackets: A model alignment and patient data representation evaluation. J. Biomed. Informatics 155 (2024)
Casey N. Ta, Jason E. Zucker, Po-Hsiang Chiu, Yilu Fang, Karthik Natarajan, Chunhua Weng
Clinical and temporal characterization of COVID-19 subgroups using patient vector embeddings of electronic health records. J. Am. Medical Informatics Assoc. 30 (2) (2023)
Yilu Fang, Hao Liu, Betina Ross S. Idnay, Casey N. Ta, Karen Marder, Chunhua Weng
A data-driven approach to optimizing clinical study eligibility criteria. J. Biomed. Informatics 142 (2023)
Tian Kang, Yingcheng Sun, Jae Hyun Kim, Casey N. Ta, Adler J. Perotte, Kayla Schiffer, Mutong Wu, Yang Zhao, Nour Moustafa-Fahmy, Yifan Peng, Chunhua Weng
: a three-level knowledge representation for medical evidence computation and comprehension. J. Am. Medical Informatics Assoc. 30 (6) (2023)
James R. Rogers, Jovana Pavisic, Casey N. Ta, Cong Liu, Ali Soroush, Ying Kuen Cheung, George Hripcsak, Chunhua Weng
Leveraging electronic health record data for clinical trial planning by assessing eligibility criteria's impact on patient count and safety. J. Biomed. Informatics 127 (2022)
Chi Yuan, Patrick B. Ryan, Casey N. Ta, Jae Hyun Kim, Ziran Li, Chunhua Weng
From clinical trials to clinical practice: How long are drugs tested and then used by patients? J. Am. Medical Informatics Assoc. 28 (11) (2021)
Yingcheng Sun, Alex M. Butler, Ibrahim Diallo, Jae Hyun Kim, Casey N. Ta, James R. Rogers, Hao Liu, Chunhua Weng
A Framework for Systematic Assessment of Clinical Trial Population Representativeness Using Electronic Health Records Data. Appl. Clin. Inform. 12 (4) (2021)
Junghwan Lee, Cong Liu, Casey N. Ta, Chunhua Weng
Towards Better Diagnosis Prediction Using Bidirectional Recurrent Neural Networks. MedInfo (2021)
Jae Hyun Kim, Alex M. Butler, Casey N. Ta, Yingcheng Sun, Mathew S. Maurer, Chunhua Weng
The potential role of EHR data in optimizing eligibility criteria definition for cardiovascular outcome trials. Int. J. Medical Informatics 156 (2021)
Tian Kang, Adler J. Perotte, Youlan Tang, Casey N. Ta, Chunhua Weng
UMLS-based data augmentation for natural language processing of clinical research literature. J. Am. Medical Informatics Assoc. 28 (4) (2021)
Cong Liu, Hao Liu, Casey N. Ta, James Roger, Alex Butler, Junghwan Lee, Jaehyun Kim, Ning Shang, Chunhua Weng
Evaluation of Criteria2Query: Towards Augmented Intelligence for Cohort Identification. MedInfo (2021)
Jae Hyun Kim, Casey N. Ta, Cong Liu, Cynthia Sung, Alex M. Butler, Latoya A. Stewart, Lyudmila Ena, James R. Rogers, Junghwan Lee, Anna Ostropolets, Patrick B. Ryan, Hao Liu, Shing M. Lee, Mitchell S. V. Elkind, Chunhua Weng
Towards clinical data-driven eligibility criteria optimization for interventional COVID-19 clinical trials. J. Am. Medical Informatics Assoc. 28 (1) (2021)
Cong Liu, Casey N. Ta, James R. Rogers, Ziran Li, Junghwan Lee, Alex M. Butler, Ning Shang, Fabricio Sampaio Peres Kury, Liwei Wang, Feichen Shen, Hongfang Liu, Lyudmila Ena, Carol Friedman, Chunhua Weng
Ensembles of natural language processing systems for portable phenotyping solutions. J. Biomed. Informatics 100 (2019)
Casey N. Ta, Chunhua Weng
Detecting Systemic Data Quality Issues in Electronic Health Records. MedInfo (2019)
Chi Yuan, Patrick B. Ryan, Casey N. Ta, Yixuan Guo, Ziran Li, Jill Hardin, Rupa Makadia, Peng Jin, Ning Shang, Tian Kang, Chunhua Weng
Criteria2Query: a natural language interface to clinical databases for cohort definition. J. Am. Medical Informatics Assoc. 26 (4) (2019)
Karamarie Fecho, Stanley C. Ahalt, Saravanan Arunachalam, James Champion, Christopher G. Chute, Sarah Davis, Kenneth Gersing, Gustavo Glusman, Jennifer Hadlock, Jewel Lee, Emily R. Pfaff, Max Robinson, Eric Sid, Casey N. Ta, Hao Xu, Richard Zhu, Qian Zhu, David B. Peden
Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon. J. Biomed. Informatics 100 (2019)
Ning Shang, Cong Liu, Luke V. Rasmussen, Casey N. Ta, Robert J. Carroll, Barbara Benoit, Todd Lingren, Ozan Dikilitas, Frank D. Mentch, David S. Carrell, Wei-Qi Wei, Yuan Luo, Vivian S. Gainer, Iftikhar J. Kullo, Jennifer A. Pacheco, Hakon Hakonarson, Theresa L. Walunas, Joshua C. Denny, Chunhua Weng
Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics 99 (2019)
Cong Liu, Fabricio Sampaio Peres Kury, Ziran Li, Casey N. Ta, Kai Wang, Chunhua Weng
Doc2Hpo: a web application for efficient and accurate HPO concept curation. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Duo Helen Wei, Casey N. Ta, Harold Alan Pincus, Chunhua Weng
Combining Clinical Data and Domain Knowledge for Analyzing Mental Disorder Concept Relatedness and Usage. ICHI (2019)
Cong Liu, Chi Yuan, Alex M. Butler, Richard D. Carvajal, Ziran Ryan Li, Casey N. Ta, Chunhua Weng
DQueST: dynamic questionnaire for search of clinical trials. J. Am. Medical Informatics Assoc. 26 (11) (2019)
James Wang, Christopher V. Barback, Casey N. Ta, Joi Weeks, Natalie Gude, Robert F. Mattrey, Sarah L. Blair, William C. Trogler, Hotaik Lee, Andrew C. Kummel
Extended Lifetime In Vivo Pulse Stimulated Ultrasound Imaging. IEEE Trans. Medical Imaging 37 (1) (2018)