Qian Zhu

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 18

Top Topics

Preliminary Study

Classifier Fusion

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

Publications

Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A. Mathé
Clustering rare diseases within an ontology-enriched knowledge graph. J. Am. Medical Informatics Assoc. 31 (1) (2023)
Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A. Mathé, Qian Zhu
User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG). MedInfo (2023)
Bradley Karas, Sue Qu, Yanji Xu, Qian Zhu
Experiments with LDA and Top2Vec for embedded topic discovery on social media data - A case study of cystic fibrosis. Frontiers Artif. Intell. 5 (2022)
Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A. Mathé, Yanji Xu
Rare disease-based scientific annotation knowledge graph. Frontiers Artif. Intell. 5 (2022)
Qian Zhu, Yong-Zi Chen, Yanji Xu
Editorial: Biomedical informatics applications in rare diseases. Frontiers Artif. Intell. 5 (2022)
Fang Liu, Yanji Xu, Jaleal Sanjak, Andrew Patt, Ruili Huang, Chunxu Qu, Qian Zhu
Profiling Tox21 Bioassay Towards Drug Repurposing for Rare Diseases. AMIA (2022)
Szeling Hsu, Sue Qu, Yanji Xu, Qian Zhu
Semantic Annotation of NIH Funding Data for Supporting Rare Disease Research. BIBM (2022)
Devon Leadman, Yanji Xu, Sue Qu, Qian Zhu
Integrative Rare Disease Profile Creation via NormMap to Advance Rare Disease Research. BIBM (2022)
Qian Zhu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Yanji Xu, Dac-Trung Nguyen, Ewy Mathé, Eric Sid
Scientific Evidence Based Knowledge Graph in Rare Diseases. BIBM (2021)
Qian Zhu, Dac-Trung Nguyen, Ivan Grishagin, Noel Southall, Eric Sid, Anne Pariser
An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD). J. Biomed. Semant. 11 (1) (2020)
Isaac Mativo, Yelena Yesha, Michael A. Grasso, Tim Oates, Qian Zhu
Hybrid Mortality Prediction using Multiple Source Systems. CoRR (2019)
Karamarie Fecho, Stanley C. Ahalt, Saravanan Arunachalam, James Champion, Christopher G. Chute, Sarah Davis, Kenneth Gersing, Gustavo Glusman, Jennifer Hadlock, Jewel Lee, Emily R. Pfaff, Max Robinson, Eric Sid, Casey N. Ta, Hao Xu, Richard Zhu, Qian Zhu, David B. Peden
Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon. J. Biomed. Informatics 100 (2019)
Qian Zhu, Shanna Frierson, Alicia Francis, Lydia Rogers, Daniel Lyman
Multi-layer framework of identifying placenta related research towards Placenta Curated Research Dataset (PCRD) development for the PAT project. J. Biomed. Informatics 94 (2019)
Tao Ding, Arpita Roy, Zhiyuan Chen, Qian Zhu, Shimei Pan
Analyzing and retrieving illicit drug-related posts from social media. BIBM (2016)
Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu, Yongqun He
Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events. J. Biomed. Semant. 7 (2016)
Weijian Qin, Qian Zhu
Network analysis with PubChem BioAssay: Preliminary study on drug abuse. BHI (2016)
Xiangjun Shen, Wen-Chao Zhang, Wei Cai, Ben-Bright B. Benuw, Heping Song, Qian Zhu, Zheng-Jun Zha
Building Locally Discriminative Classifier Ensemble Through Classifier Fusion Among Nearest Neighbors. PCM (1) (2016)
Qian Zhu, Anirudh Akkati, Pornpoh Hongwattanakul
Risk feature assessment of readmission for diabetes. BIBM (2016)
Yuji Zhang, Qian Zhu, Hongfang Liu
Next generation informatics for big data in precision medicine era. BioData Min. 8 (2015)
Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu
Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. BioData Min. 8 (2015)
Jie Xu, Luke V. Rasmussen, Pamela L. Shaw, Guoqian Jiang, Richard C. Kiefer, Huan Mo, Jennifer A. Pacheco, Peter Speltz, Qian Zhu, Joshua C. Denny, Jyotishman Pathak, William K. Thompson, Enid N. H. Montague
Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris
Desiderata for computable representations of electronic health records-driven phenotype algorithms. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Iyanuoluwa Emmanuel Odebode, Aryya Gangopadhyay, Qian Zhu
Acquisition of diabetes-related biological associations using a motif based network: Preliminary results. BIBM (2015)
Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce
Toward a complete dataset of drug-drug interaction information from publicly available sources. J. Biomed. Informatics 55 (2015)
Robert R. Freimuth, Kelly Wix, Qian Zhu, Mark Siska, Christopher G. Chute
Evaluation of RxNorm for Medication Clinical Decision Support. AMIA (2014)
Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu
Cancer Based Pharmacogenomics Network for Drug Repurposing. PAKDD Workshops (2014)
Qian Zhu, Huan Mo, Luke V. Rasmussen, Andrew R. Post, Jennifer A. Pacheco, Jie Xu, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Jyotishman Pathak
Qualitative evaluation of three phenotype information models to find methotrexate liver injury. AMIA (2014)
Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute
Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches. Pacific Symposium on Biocomputing (2014)
Qian Zhu, Cui Tao
Pharmacological Class Data Representation in the Web Ontology Language (OWL). ICBO (2014)
Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber
Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study. BIBM (2014)
Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber
iGenetics: An Individualized Genetic Test Recommendation System Based on EHRs. AMIA (2014)
Qian Zhu, Cui Tao
Pharmacological class data representation in the Web Ontology Language (OWL). IEEE BigData (2014)
Luke V. Rasmussen, Jie Xu, Ruijue Liu, Qian Zhu, Jennifer A. Pacheco, Jyotishman Pathak, William K. Thompson, Joshua C. Denny, Huan Mo, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague
Evaluation of Existing Phenotype Authoring Tools for Clinical Research. AMIA (2014)
Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute
Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements. AMIA (2013)
Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study. J. Biomed. Informatics 46 (2) (2013)
Qian Zhu, Robert R. Freimuth, Jyotishman Pathak, Matthew J. Durski, Christopher G. Chute
Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL. J. Biomed. Informatics 46 (4) (2013)
Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute
Standardized Drug and Pharmacological Class Network Construction. VDOS+DO@ICBO (2013)
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. J. Am. Medical Informatics Assoc. 20 (3) (2013)
Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute
Standardized Drug and Pharmacological Class Network Construction. MedInfo (2013)
Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute
Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results. Pacific Symposium on Biocomputing (2012)
Qian Zhu, Guoqian Jiang, Christopher G. Chute
Profiling structured product labeling with NDF-RT and RxNorm. J. Biomed. Semant. 3 (2012)
Qian Zhu, Guoqian Jiang, Christopher G. Chute
A Standardized Drug and Drug Class Universal Network. AMIA (2012)
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute
A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data. HISB (2012)
Qian Zhu, Yuyin Sun, Sashikiran Challa, Ying Ding, Michael S. Lajiness, David J. Wild
Semantic Inference using Chemogenomics Data for Drug Discovery CoRR (2011)
Qian Zhu, Yuyin Sun, Sashikiran Challa, Ying Ding, Michael S. Lajiness, David J. Wild
Semantic Inference using Chemogenomics Data for Drug Discovery. BMC Bioinform. 12 (2011)
Bin Chen, Ying Ding, Huijun Wang, David J. Wild, Xiao Dong, Yuyin Sun, Qian Zhu, Madhuvanthi Sankaranarayanan
Chem2Bio2RDF: A Linked Open Data Portal for Systems Chemical Biology. Web Intelligence (2010)
Bin Chen, David J. Wild, Qian Zhu, Ying Ding, Xiao Dong, Madhuvanthi Sankaranarayanan, Huijun Wang, Yuyin Sun
Chem2Bio2RDF: A Linked Open Data Portal for Chemical Biology CoRR (2010)
Qian Zhu, Michael S. Lajiness, Ying Ding, David J. Wild
WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications. J. Cheminformatics 2 (2010)
Qian Zhu, Sashikiran Challa, Prajakta Purohit, Yuyin Sun, Michael S. Lajiness, David J. Wild, Ying Ding
Using Web Technologies for Integrative Drug Discovery. Web Intelligence (2010)
Bin Chen, Xiao Dong, Dazhi Jiao, Huijun Wang, Qian Zhu, Ying Ding, David J. Wild
Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data. BMC Bioinform. 11 (2010)
Sashikiran Challa, David J. Wild, Ying Ding, Qian Zhu
Semantic Rules on Drug Discovery Data. ASWC (2009)
Qian Zhu, Jianhua Yao, Shengang Yuan, Feng Li, Haifeng Chen, Wei Cai, Quan Liao
Superstructure Searching Algorithm for Generic Reaction Retrieval. J. Chem. Inf. Model. 45 (5) (2005)