Zuoshuang Xiang

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 10

Top Topics

Ontology Development

Molecular Interactions

Top Venues

J. Biomed. Semant.

Nucleic Acids Res.

ICBO/BioCreative

Publications

Edison Ong, Michael F. Cooke, Anthony Huffman, Zuoshuang Xiang, Mei U. Wong, Haihe Wang, Meenakshi Seetharaman, Ninotchka Valdez, Yongqun He
Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Samantha Sayers, Li Li, Edison Ong, Shunzhou Deng, Guanghua Fu, Yu Lin, Brian Yang, Shelley Zhang, Zhenzong Fa, Bin Zhao, Zuoshuang Xiang, Yongqing Li, Xing-Ming Zhao, Michal Olszewski, Luonan Chen, Yongqun He
Victors: a web-based knowledge base of virulence factors in human and animal pathogens. Nucleic Acids Res. 47 (Database-Issue) (2019)
Yongqun He, Zuoshuang Xiang, Jie Zheng, Yu Lin, James A. Overton, Edison Ong
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. J. Biomed. Semant. 9 (1) (2018)
Edison Ong, Zuoshuang Xiang, Bin Zhao, Yue Liu, Yu Lin, Jie Zheng, Chris Mungall, Mélanie Courtot, Alan Ruttenberg, Yongqun He
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration. Nucleic Acids Res. 45 (Database-Issue) (2017)
Edison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He
Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion. ICBO/BioCreative (2016)
Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu, Yongqun He
Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events. J. Biomed. Semant. 7 (2016)
Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks. ICBO/BioCreative (2016)
Yu Lin, Zuoshuang Xiang, Yongqun He
Ontology-based representation and analysis of host-Brucella interactions. J. Biomed. Semant. 6 (2015)
Zuoshuang Xiang, Jie Zheng, Yu Lin, Yongqun He
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns. J. Biomed. Semant. 6 (2015)
Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions. J. Biomed. Semant. 6 (2015)
Rebecca Racz, Xinna Li, Mukti Patel, Zuoshuang Xiang, Yongqun He
DNAVaxDB: the first web-based DNA vaccine database and its data analysis. BMC Bioinform. 15 (S-4) (2014)
Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He
CLO: The cell line ontology. J. Biomed. Semant. 5 (2014)
Yongqun He, Rebecca Racz, Samantha Sayers, Yu Lin, Thomas E. Todd, Junguk Hur, Xinna Li, Mukti Patel, Boyang Zhao, Monica Chung, Joseph Ostrow, Andrew Sylora, Priya Dungarani, Guerlain Ulysse, Kanika Kochhar, Boris Vidri, Kelsey Strait, George W. Jourdian, Zuoshuang Xiang
Updates on the web-based VIOLIN vaccine database and analysis system. Nucleic Acids Res. 42 (Database-Issue) (2014)
Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He
Ontodog: a web-based ontology community view generation tool. Bioinform. 30 (9) (2014)
Zuoshuang Xiang, Yu Lin, Yongqun He
Ontobat: An Ontology-based Semantic Web Approach for Linked Data Processing and Analysis. ICBO (2014)
Yongqun He, Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Abra Guo, Shelley Zhang, Desikan Jagannathan, Luca Toldo, Cui Tao, Barry Smith
OAE: The Ontology of Adverse Events. J. Biomed. Semant. 5 (2014)
Zuoshuang Xiang, Tingting Qin, Zhaohui S. Qin, Yongqun He
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks. BMC Syst. Biol. 7 (S-3) (2013)
Zuoshuang Xiang, Yongqun He
HINO: BFO-aligned ontology representation of human molecular interactions and pathways. ICBO (2013)
Yongqun He, Zuoshuang Xiang
HINO: a BFO-aligned ontology representing human molecular interactions and pathways. CoRR (2013)
Zuoshuang Xiang, Yongqun He
Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology. BMC Bioinform. 14 (S-4) (2013)
Thomas E. Todd, Omar Tibi, Yu Lin, Samantha Sayers, Denise N. Bronner, Zuoshuang Xiang, Yongqun He
Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates. BMC Bioinform. 14 (S-6) (2013)
Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining. J. Biomed. Semant. 3 (2012)
Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He
Ontodog: A Web-based Ontology Community View Generator. ICBO (2012)
Zuoshuang Xiang, Yu Lin, Yongqun He
Ontorat web server for automatic generation and annotations of new ontology terms. ICBO (2012)
Arzucan Özgür, Zuoshuang Xiang, Dragomir R. Radev, Yongqun He
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology. J. Biomed. Semant. 2 (S-2) (2011)
Zuoshuang Xiang, Yu Lin, Yongqun He
OntoFox and its Application in Development of Brucellosis Ontology. ICBO (2011)
Yongqun He, Zuoshuang Xiang, Sirarat Sarntivijai, Luca Toldo, Werner Ceusters
AEO: A Realism-Based Biomedical Ontology for the Representation of Adverse Events. ICBO (2011)
Sirarat Sarntivijai, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Brian D. Athey, Yongqun He
Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics. ICBO (2011)
Yu Lin, Zuoshuang Xiang, Yongqun He
Towards a Semantic Web Application: Ontology-Driven Ortholog Clustering Analysis. ICBO (2011)
Brian Yang, Samantha Sayers, Zuoshuang Xiang, Yongqun He
Protegen: a web-based protective antigen database and analysis system. Nucleic Acids Res. 39 (Database-Issue) (2011)
Zuoshuang Xiang, Chris Mungall, Alan Ruttenberg, Yongqun He
Ontobee: A Linked Data Server and Browser for Ontology Terms. ICBO (2011)
Yu Lin, Zuoshuang Xiang, Yongqun He
Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology. J. Biomed. Semant. 2 (2011)
Zuoshuang Xiang, Thomas E. Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf, George W. Jourdian, Yongqun He
VIOLIN: vaccine investigation and online information network. Nucleic Acids Res. 36 (Database-Issue) (2008)
Zuoshuang Xiang, Rebecca M. Minter, Xiaoming Bi, Peter J. Woolf, Yongqun He
miniTUBA: medical inference by network integration of temporal data using Bayesian analysis. Bioinform. 23 (18) (2007)
Zuoshuang Xiang, Zhaohui S. Qin, Yongqun He
CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering. Bioinform. 23 (14) (2007)
Zuoshuang Xiang, Wenjie Zheng, Yongqun He
genome annotation with literature mining and curation. BMC Bioinform. 7 (2006)