Zhaohui S. Qin

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 21

Top Topics

Human Genome Project

Data Generation

Bayesian Inference

Top Venues

Briefings Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Frontiers Big Data

Publications

Shiyu Wang, Yuanqi Du, Xiaojie Guo, Bo Pan, Zhaohui S. Qin, Liang Zhao
Controllable Data Generation by Deep Learning: A Review. ACM Comput. Surv. 56 (9) (2024)
Ramin Homayouni, Prashanti Manda, Aik Choon Tan, Zhaohui S. Qin
Editorial: AI and data science in drug development and public health: Highlights from the MCBIOS 2022 conference. Frontiers Big Data 6 (2023)
Zhen Cao, Yanting Huang, Ran Duan, Peng Jin, Zhaohui S. Qin, Shihua Zhang
Disease category-specific annotation of variants using an ensemble learning framework. Briefings Bioinform. 23 (1) (2022)
Wenjing Ma, Sumeet Sharma, Peng Jin, Shannon L. Gourley, Zhaohui S. Qin
: detecting the source of differential expression at the sub-cell-type level from bulk RNA-seq data. Briefings Bioinform. 23 (3) (2022)
Da Yan, Zhaohui S. Qin, Debswapna Bhattacharya, Jake Y. Chen
Guest Editorial for Selected Papers From BIOKDD 2021. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Boqi Wang, James Yang, Steven Qiu, Yongsheng Bai, Zhaohui S. Qin
Systematic Exploration in Tissue-Pathway Associations of Complex Traits Using Comprehensive eQTLs Catalog. Frontiers Big Data 4 (2021)
Zhaohui S. Qin
A wonderful time - exciting progress made in the past 20 years in genetics powered by the Human Genome Project. Quant. Biol. 9 (4) (2021)
Rongrong Zhang, Ming Hu, Yu Zhu, Zhaohui S. Qin, Ke Deng, Jun S. Liu
Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (2) (2020)
Tianlei Xu, Peng Jin, Zhaohui S. Qin
Regulatory annotation of genomic intervals based on tissue-specific expression QTLs. Bioinform. 36 (3) (2020)
Tianlei Xu, Xiaoqi Zheng, Ben Li, Peng Jin, Zhaohui S. Qin, Hao Wu
A comprehensive review of computational prediction of genome-wide features. Briefings Bioinform. 21 (1) (2020)
Jonathan D. Wren, Yongsheng Bai, Zhaohui S. Qin, Da Yan, Ramin Homayouni
Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinform. (4) (2020)
Guodong Yang, Aiqun Ma, Zhaohui S. Qin, Li Chen
Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules. Bioinform. 36 (8) (2020)
Axel Poulet, Ben Li, Tristan Dubos, Juan Carlos Rivera-Mulia, David M. Gilbert, Zhaohui S. Qin
RT States: systematic annotation of the human genome using cell type-specific replication timing programs. Bioinform. 35 (13) (2019)
Payam Karisani, Zhaohui S. Qin, Eugene Agichtein
Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval. Database J. Biol. Databases Curation 2018 (2018)
Xiaobo Sun, William S. Pittard, Tianlei Xu, Li Chen, Michael E. Zwick, Xiaoqian Jiang, Fusheng Wang, Zhaohui S. Qin
Omicseq: a web-based search engine for exploring omics datasets. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Xiaobo Sun, Fusheng Wang, Zhaohui S. Qin
High Performance Merging of Massive Data from Genome-Wide Association Studies. DMAH@VLDB (2017)
Zhaohui S. Qin
Special collection of bioinformatics in the era of precision medicine. Quant. Biol. 5 (4) (2017)
Zheng Xu, Guosheng Zhang, Fulai Jin, Mengjie Chen, Terrence S. Furey, Patrick F. Sullivan, Zhaohui S. Qin, Ming Hu, Yun Li
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data. Bioinform. 32 (5) (2016)
Yongqun He, Zhaohui S. Qin, Jie Zheng
EGO: A Biomedical Ontology for Integrative Epigenome Representation and Analysis. ICBO/BioCreative (2016)
Ben Li, Zhaonan Sun, Qing He, Yu Zhu, Zhaohui S. Qin
Bayesian inference with historical data-based informative priors improves detection of differentially expressed genes. Bioinform. 32 (5) (2016)
Li Chen, Zhaohui S. Qin
traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals. Bioinform. 32 (8) (2016)
Shuai Yuan, H. Richard Johnston, Guosheng Zhang, Yun Li, Yi-Juan Hu, Zhaohui S. Qin
One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies. PLoS Comput. Biol. 11 (8) (2015)
Li Chen, Chi Wang, Zhaohui S. Qin, Hao Wu
A novel statistical method for quantitative comparison of multiple ChIP-seq datasets. Bioinform. 31 (12) (2015)
Zuoshuang Xiang, Tingting Qin, Zhaohui S. Qin, Yongqun He
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks. BMC Syst. Biol. 7 (S-3) (2013)
Hyungwon Choi, Damian Fermin, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin
Sparsely correlated hidden Markov models with application to genome-wide location studies. Bioinform. 29 (5) (2013)
Ming Hu, Ke Deng, Zhaohui S. Qin, Jun S. Liu
Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data. Quant. Biol. 1 (2) (2013)
Ming Hu, Ke Deng, Zhaohui S. Qin, Jesse R. Dixon, Siddarth Selvaraj, Jennifer Fang, Bing Ren, Jun S. Liu
Bayesian Inference of Spatial Organizations of Chromosomes. PLoS Comput. Biol. 9 (1) (2013)
Ming Hu, Ke Deng, Siddarth Selvaraj, Zhaohui S. Qin, Bing Ren, Jun S. Liu
HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinform. 28 (23) (2012)
Ming Hu, Yu Zhu, Jeremy M. G. Taylor, Jun S. Liu, Zhaohui S. Qin
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq. Bioinform. 28 (1) (2012)
Shuai Yuan, Zhaohui S. Qin
Read-mapping using personalized diploid reference genome for RNA sequencing data reduced bias for detecting allele-specific expression. BIBM Workshops (2012)
Hyungwon Choi, Zhaohui S. Qin, Debashis Ghosh
A Double-Layered Mixture Model for the Joint Analysis of DNA Copy Number and Gene Expression Data. J. Comput. Biol. 17 (2) (2010)
Zhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data. BMC Bioinform. 11 (2010)
Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin
Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. Bioinform. 25 (14) (2009)
Zhaohui S. Qin
Data Analysis and Graphics Using R: An Example-Based Approach, Second Edition.: John Maindonald and John Braun. Briefings Bioinform. 9 (3) (2008)
Zuoshuang Xiang, Zhaohui S. Qin, Yongqun He
CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering. Bioinform. 23 (14) (2007)
Zhaohui S. Qin, Shyam Gopalakrishnan, Gonçalo R. Abecasis
An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria. Bioinform. 22 (2) (2006)
Zhaohui S. Qin
Clustering microarray gene expression data using weighted Chinese restaurant process. Bioinform. 22 (16) (2006)
Shyam Gopalakrishnan, Zhaohui S. Qin
TagSNP Selection Based on Pairwise LD Criteria and Power Analysis in Association Studies. Pacific Symposium on Biocomputing (2006)
Dongxiao Zhu, Alfred O. Hero III, Zhaohui S. Qin, Anand Swaroop
High Throughput Screening of Co-Expressed Gene Pairs with Controlled False Discovery Rate (FDR) and Minimum Acceptable Strength (MAS). J. Comput. Biol. 12 (7) (2005)
Dongxiao Zhu, Zhaohui S. Qin
Structural comparison of metabolic networks in selected single cell organisms. BMC Bioinform. 6 (2005)
Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinform. 21 (1) (2005)
Xin Lu, Wen Zhang, Zhaohui S. Qin, Jun S. Liu
Statistical Resynchronization and Detection of Periodic Transcripts. CSB (2003)
Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun
Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference (2002)
Tianhua Niu, Xin Lu, Hosung Kang, Zhaohui S. Qin, Jun S. Liu
Haplotype Inference and Its Application in Linkage Disequilibrium Mapping. Computational Methods for SNPs and Haplotype Inference (2002)