Debswapna Bhattacharya

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 19

Top Topics

Quality Assessment

Protein Structure

Machine Learning

Top Venues

Publications

Trevor Norton, Debswapna Bhattacharya
Sifting through the Noise: A Survey of Diffusion Probabilistic Models and Their Applications to Biomolecules. CoRR (2024)
Rahmatullah Roche, Bernard Moussad, Md Hossain Shuvo, Debswapna Bhattacharya
E(3) equivariant graph neural networks for robust and accurate protein-protein interaction site prediction. PLoS Comput. Biol. 19 (8) (2023)
Da Yan, Zhaohui S. Qin, Debswapna Bhattacharya, Jake Y. Chen
Guest Editorial for Selected Papers From BIOKDD 2021. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Md Hossain Shuvo, Muhammad Gulfam, Debswapna Bhattacharya
DeepRefiner: high-accuracy protein structure refinement by deep network calibration. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Rahmatullah Roche, Sutanu Bhattacharya, Debswapna Bhattacharya
Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins. PLoS Comput. Biol. 17 (2) (2021)
Rahmatullah Roche, Sutanu Bhattacharya, Debswapna Bhattacharya
Hybridized distance- and contact- based hierarchical protein structure modeling using DConStruct. BCB (2021)
Da Yan, Steve Qin, Debswapna Bhattacharya, Jake Y. Chen, Mohammed J. Zaki
20th International Workshop on Data Mining in Bioinformatics (BIOKDD 2021). KDD (2021)
Md Hossain Shuvo, Sutanu Bhattacharya, Debswapna Bhattacharya
QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks. Bioinform. 36 (Supplement-1) (2020)
Sutanu Bhattacharya, Debswapna Bhattacharya
How Effective is Contact-assisted Protein Threading? BCB (2019)
Debswapna Bhattacharya
refineD: improved protein structure refinement using machine learning based restrained relaxation. Bioinform. 35 (18) (2019)
Sutanu Bhattacharya, Debswapna Bhattacharya
Contact-assisted Protein Threading: An Evolving New Direction. BCB (2019)
Rahul Alapati, Debswapna Bhattacharya
clustQ: Efficient Protein Decoy Clustering Using Superposition-free Weighted Internal Distance Comparisons. BCB (2018)
Renzhi Cao, Badri Adhikari, Debswapna Bhattacharya, Miao Sun, Jie Hou, Jianlin Cheng
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques. Bioinform. 33 (4) (2017)
Debswapna Bhattacharya, Renzhi Cao, Jianlin Cheng
protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling. Bioinform. 32 (18) (2016)
Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
DeepQA: Improving the estimation of single protein model quality with deep belief networks. CoRR (2016)
Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
DeepQA: improving the estimation of single protein model quality with deep belief networks. BMC Bioinform. 17 (2016)
Debswapna Bhattacharya, Jackson Nowotny, Renzhi Cao, Jianlin Cheng
3Drefine: an interactive web server for efficient protein structure refinement. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling. Bioinform. 32 (13) (2016)
Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
ConEVA: a toolbox for comprehensive assessment of protein contacts. BMC Bioinform. 17 (2016)
Renzhi Cao, Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
Large-scale model quality assessment for improving protein tertiary structure prediction. Bioinform. 31 (12) (2015)
Debswapna Bhattacharya, Jianlin Cheng
Protein Structure Refinement by Iterative Fragment Exchange. BCB (2013)
Debswapna Bhattacharya, Jianlin Cheng
Automated protein structure refinement using i3Drefine software and its assessment in CASP10. BCB (2013)