Mohammed J. Zaki

ORCID

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 74

Top Venues

CoRR

KDD

Data Min. Knowl. Discov.

DSMM@SIGMOD

Publications

Md. Shamim Hussain, Mohammed J. Zaki, Dharmashankar Subramanian
Triplet Interaction Improves Graph Transformers: Accurate Molecular Graph Learning with Triplet Graph Transformers. CoRR (2024)
Da Yan, Ariful Azad, Jie Hou, Jake Y. Chen, Mohammed J. Zaki
22nd International Workshop on Data Mining in Bioinformatics (BIOKDD 2023). KDD (2023)
Fnu Mohbat, Mohammed J. Zaki, Catherine Finegan-Dollak, Ashish Verma
GVdoc - Graph-based Visual DOcument Classification. ACL (Findings) (2023)
Bishwajit Saha, Dmitry Krotov, Mohammed J. Zaki, Parikshit Ram
End-to-end Differentiable Clustering with Associative Memories. CoRR (2023)
Benjamin Hoover, Yuchen Liang, Bao Pham, Rameswar Panda, Hendrik Strobelt, Duen Horng Chau, Mohammed J. Zaki, Dmitry Krotov
Energy Transformer. NeurIPS (2023)
Md. Shamim Hussain, Mohammed J. Zaki, Dharmashankar Subramanian
The Information Pathways Hypothesis: Transformers are Dynamic Self-Ensembles. CoRR (2023)
Fnu Mohbat, Mohammed J. Zaki, Catherine Finegan-Dollak, Ashish Verma
GVdoc: Graph-based Visual Document Classification. CoRR (2023)
Benjamin Hoover, Yuchen Liang, Bao Pham, Rameswar Panda, Hendrik Strobelt, Duen Horng Chau, Mohammed J. Zaki, Dmitry Krotov
Energy Transformer. CoRR (2023)
Md. Shamim Hussain, Mohammed J. Zaki, Dharmashankar Subramanian
The Information Pathways Hypothesis: Transformers are Dynamic Self-Ensembles. KDD (2023)
Bishwajit Saha, Dmitry Krotov, Mohammed J. Zaki, Parikshit Ram
End-to-end Differentiable Clustering with Associative Memories. ICML (2023)
Diya Li, Mohammed J. Zaki, Ching-Hua Chen
Health-guided recipe recommendation over knowledge graphs. J. Web Semant. 75 (2023)
Diya Li, Mohammed J. Zaki
Food Knowledge Representation Learning with Adversarial Substitution. AACL/IJCNLP (1) (2022)
Md. Shamim Hussain, Mohammed J. Zaki, Dharmashankar Subramanian
Global Self-Attention as a Replacement for Graph Convolution. KDD (2022)
Yuchen Liang, Dmitry Krotov, Mohammed J. Zaki
Modern Hopfield Networks for graph embedding. Frontiers Big Data 5 (2022)
Muhammad Abulaish, Mohd Fazil, Mohammed J. Zaki
Domain-Specific Keyword Extraction Using Joint Modeling of Local and Global Contextual Semantics. ACM Trans. Knowl. Discov. Data 16 (4) (2022)
Qitong Wang, Mohammed J. Zaki
HG2Vec: Improved Word Embeddings from Dictionary and Thesaurus Based Heterogeneous Graph. COLING (2022)
Jonathan J. Harris, Mohammed J. Zaki
Towards Neural Numeric-To-Text Generation From Temporal Personal Health Data. CoRR (2022)
Da Yan, Catia Pesquita, Carsten Görg, Jake Y. Chen, Mohammed J. Zaki
21th International Workshop on Data Mining in Bioinformatics (BIOKDD 2022). KDD (2022)
Yuchen Liang, Dmitry Krotov, Mohammed J. Zaki
Associative Learning for Network Embedding. CoRR (2022)
Nidhi Rastogi, Sharmishtha Dutta, Alex Gittens, Mohammed J. Zaki, Charu C. Aggarwal
TINKER: A framework for Open source Cyberthreat Intelligence. TrustCom (2022)
Bolun "Namir" Xia, Vipula D. Rawte, Mohammed J. Zaki, Aparna Gupta
FETILDA: An Effective Framework For Fin-tuned Embeddings For Long Financial Text Documents. CoRR (2022)
Yuchen Liang, Chaitanya K. Ryali, Benjamin Hoover, Leopold Grinberg, Saket Navlakha, Mohammed J. Zaki, Dmitry Krotov
Can a Fruit Fly Learn Word Embeddings? CoRR (2021)
Yuchen Liang, Mohammed J. Zaki
Keyphrase Extraction Using Neighborhood Knowledge Based on Word Embeddings. CoRR (2021)
Jonathan J. Harris, Deborah L. McGuinness, Marco Monti, Oshani Seneviratne, Mohammed J. Zaki, Ching-Hua Chen
Enhancing Clinical Relevance of Health Behavior Insights via Semantics. AMIA (2021)
Eman A. Maghawry, Tarek F. Gharib, Rasha M. Ismail, Mohammed J. Zaki
An Efficient Heartbeats Classifier Based on Optimizing Convolutional Neural Network Model. IEEE Access 9 (2021)
Yu Chen, Ananya Subburathinam, Ching-Hua Chen, Mohammed J. Zaki
Personalized Food Recommendation as Constrained Question Answering over a Large-scale Food Knowledge Graph. CoRR (2021)
Da Yan, Steve Qin, Debswapna Bhattacharya, Jake Y. Chen, Mohammed J. Zaki
20th International Workshop on Data Mining in Bioinformatics (BIOKDD 2021). KDD (2021)
Yu Chen, Ananya Subburathinam, Ching-Hua Chen, Mohammed J. Zaki
Personalized Food Recommendation as Constrained Question Answering over a Large-scale Food Knowledge Graph. WSDM (2021)
Md. Shamim Hussain, Mohammed J. Zaki, Dharmashankar Subramanian
Edge-augmented Graph Transformers: Global Self-attention is Enough for Graphs. CoRR (2021)
Jonathan J. Harris, Ching-Hua Chen, Mohammed J. Zaki
A Framework for Generating Summaries from Temporal Personal Health Data. ACM Trans. Comput. Heal. 2 (3) (2021)
Diya Li, Mohammed J. Zaki, Ching-Hua Chen
Nutrition Guided Recipe Search via Pre-trained Recipe Embeddings. ICDE Workshops (2021)
Yuchen Liang, Chaitanya K. Ryali, Benjamin Hoover, Leopold Grinberg, Saket Navlakha, Mohammed J. Zaki, Dmitry Krotov
Can a Fruit Fly Learn Word Embeddings? ICLR (2021)
Muhammad Abulaish, Ashraf Kamal, Mohammed J. Zaki
A Survey of Figurative Language and Its Computational Detection in Online Social Networks. ACM Trans. Web 14 (1) (2020)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Iterative Deep Graph Learning for Graph Neural Networks: Better and Robust Node Embeddings. CoRR (2020)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
GraphFlow: Exploiting Conversation Flow with Graph Neural Networks for Conversational Machine Comprehension. IJCAI (2020)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Toward Subgraph Guided Knowledge Graph Question Generation with Graph Neural Networks. CoRR (2020)
Nidhi Rastogi, Sharmishtha Dutta, Mohammed J. Zaki, Alex Gittens, Charu C. Aggarwal
MALOnt: An Ontology for Malware Threat Intelligence. CoRR (2020)
Yu Chen, Ching-Hua Chen, Mohammed J. Zaki
Combining User Preferences and Health Needs in Personalized Food Recommendation. AMIA (2020)
Jonathan J. Harris, Ching-Hua Chen, Mohammed J. Zaki
A Framework for Generating Explanations from Temporal Personal Health Data. CoRR (2020)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Reinforcement Learning Based Graph-to-Sequence Model for Natural Question Generation. ICLR (2020)
Diya Li, Mohammed J. Zaki
RECIPTOR: An Effective Pretrained Model for Recipe Representation Learning. KDD (2020)
Nidhi Rastogi, Mohammed J. Zaki
Personal Health Knowledge Graphs for Patients. CoRR (2020)
Vipula Rawte, Aparna Gupta, Mohammed J. Zaki
A Comparative Analysis of Temporal Long Text Similarity: Application to Financial Documents. MIDAS@PKDD/ECML (2020)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Iterative Deep Graph Learning for Graph Neural Networks: Better and Robust Node Embeddings. NeurIPS (2020)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Bidirectional Attentive Memory Networks for Question Answering over Knowledge Bases. NAACL-HLT (1) (2019)
Steven Haussmann, Oshani Seneviratne, Yu Chen, Yarden Ne'eman, James V. Codella, Ching-Hua Chen, Deborah L. McGuinness, Mohammed J. Zaki
FoodKG: A Semantics-Driven Knowledge Graph for Food Recommendation. ISWC (2) (2019)
Rodrigo L. Cardoso, Wagner Meira Jr., Virgílio A. F. Almeida, Mohammed J. Zaki
A Framework for Benchmarking Discrimination-Aware Models in Machine Learning. AIES (2019)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Bidirectional Attentive Memory Networks for Question Answering over Knowledge Bases. CoRR (2019)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
GraphFlow: Exploiting Conversation Flow with Graph Neural Networks for Conversational Machine Comprehension. CoRR (2019)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Reinforcement Learning Based Graph-to-Sequence Model for Natural Question Generation. CoRR (2019)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Deep Iterative and Adaptive Learning for Graph Neural Networks. CoRR (2019)
Yu Chen, Lingfei Wu, Mohammed J. Zaki
Natural Question Generation with Reinforcement Learning Based Graph-to-Sequence Model. CoRR (2019)
Steven Haussmann, Yu Chen, Oshani Seneviratne, Nidhi Rastogi, James V. Codella, Ching-Hua Chen, Deborah L. McGuinness, Mohammed J. Zaki
FoodKG Enabled Q&A Application. ISWC (Satellites) (2019)
Vipula Rawte, Aparna Gupta, Mohammed J. Zaki
Analysis of year-over-year changes in Risk Factors Disclosure in 10-K filings. DSMM@SIGMOD (2018)
Vipula Rawte, Aparna Gupta, Mohammed J. Zaki
Using supervised learning techniques for entity relationships. DSMM@SIGMOD (2018)
Louiqa Raschid, Douglas Burdick, John Grant, Joe Langsam, Jay Pujara, Elizabeth Roman, Ian Soboroff, Mohammed J. Zaki, Elena Zotkina
Financial Entity Identification and Information Integration (FEIII) 2018 Challenge: The Report of the Organizing Committee. DSMM@SIGMOD (2018)
Xin Gao, Jake Y. Chen, Mohammed J. Zaki
Multiscale and Multimodal Analysis for Computational Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Mohamed Elshrif, Stefano Giovanni Rizzo, Franz D. Betz, Dragos D. Margineantu, Mohammed J. Zaki, Saniav Chawla
Embeddings for the Identification of Aircraft Faults (MERIT). ICPHM (2018)
Abdoulaye Baniré Diallo, Engelbert Mephu Nguifo, Mohammed J. Zaki
Preface: Selected Papers from the Workshop Bioinformatics and Artificial Intelligence Joined with the International Joint Conference on Artificial Intelligence. J. Comput. Biol. 24 (8) (2017)
Yu Chen, Mohammed J. Zaki
KATE: K-Competitive Autoencoder for Text. KDD (2017)
Eslam Hussein, Abdurrahman Ghanem, Vinícius Vitor dos Santos Dias, Carlos H. C. Teixeira, Ghadeer AbuOda, Marco Serafini, Georgos Siganos, Gianmarco De Francisci Morales, Ashraf Aboulnaga, Mohammed J. Zaki
Graph Data Mining with Arabesque. SIGMOD Conference (2017)
Yu Chen, Mohammed J. Zaki
KATE: K-Competitive Autoencoder for Text. CoRR (2017)
Yu Chen, Rhaad M. Rabbani, Aparna Gupta, Mohammed J. Zaki
Comparative text analytics via topic modeling in banking. SSCI (2017)
Divy Agrawal, Sanjay Chawla, Ahmed K. Elmagarmid, Zoi Kaoudi, Mourad Ouzzani, Paolo Papotti, Jorge-Arnulfo Quiané-Ruiz, Nan Tang, Mohammed J. Zaki
Road to Freedom in Big Data Analytics. EDBT (2016)
Nilothpal Talukder, Mohammed J. Zaki
Parallel graph mining with dynamic load balancing. IEEE BigData (2016)
Geng Li, Mohammed J. Zaki
Sampling frequent and minimal boolean patterns: theory and application in classification. Data Min. Knowl. Discov. 30 (1) (2016)
Nilothpal Talukder, Mohammed J. Zaki
A distributed approach for graph mining in massive networks. Data Min. Knowl. Discov. 30 (5) (2016)
Aparna Gupta, Majeed Simaan, Mohammed J. Zaki
Investigating bank failures using text mining. SSCI (2016)
Luam C. Totti, Prasenjit Mitra, Mourad Ouzzani, Mohammed J. Zaki
A Query-oriented Approach for Relevance in Citation Networks. WWW (Companion Volume) (2016)
Divy Agrawal, Mouhamadou Lamine Ba, Laure Berti-Équille, Sanjay Chawla, Ahmed K. Elmagarmid, Hossam Hammady, Yasser Idris, Zoi Kaoudi, Zuhair Khayyat, Sebastian Kruse, Mourad Ouzzani, Paolo Papotti, Jorge-Arnulfo Quiané-Ruiz, Nan Tang, Mohammed J. Zaki
Rheem: Enabling Multi-Platform Task Execution. SIGMOD Conference (2016)
Sarath Chandra Janga, Dongxiao Zhu, Jake Y. Chen, Mohammed J. Zaki
Knowledge Discovery Using Big Data in Biomedical Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (4) (2015)
Carlos H. C. Teixeira, Alexandre J. Fonseca, Marco Serafini, Georgos Siganos, Mohammed J. Zaki, Ashraf Aboulnaga
Arabesque: A System for Distributed Graph Mining - Extended version. CoRR (2015)
Carlos H. C. Teixeira, Alexandre J. Fonseca, Marco Serafini, Georgos Siganos, Mohammed J. Zaki, Ashraf Aboulnaga
Arabesque: a system for distributed graph mining. SOSP (2015)
Gessé Dafé, Adriano Veloso, Mohammed J. Zaki, Wagner Meira Jr.
Learning sequential classifiers from long and noisy discrete-event sequences efficiently. Data Min. Knowl. Discov. 29 (6) (2015)
Robert Kessl, Nilothpal Talukder, Pranay Anchuri, Mohammed J. Zaki
Parallel Graph Mining with GPUs. BigMine (2014)
Renê Rodrigues Veloso, Loïc Cerf, Wagner Meira Jr., Mohammed J. Zaki
Reachability Queries in Very Large Graphs: A Fast Refined Online Search Approach. EDBT (2014)
Hilmi Yildirim, Vineet Chaoji, Mohammed J. Zaki
DAGGER: A Scalable Index for Reachability Queries in Large Dynamic Graphs CoRR (2013)
Apirak Hoonlor, Boleslaw K. Szymanski, Mohammed J. Zaki
Trends in computer science research. Commun. ACM 56 (10) (2013)
Geng Li, Stephan Günnemann, Mohammed J. Zaki
Stochastic subspace search for top-k multi-view clustering. MultiClust@KDD (2013)
Pranay Anchuri, Mohammed J. Zaki, Omer Barkol, Shahar Golan, Moshe Shamy
Approximate graph mining with label costs. KDD (2013)
Hélio Marcos Paz de Almeida, Dorgival Olavo Guedes Neto, Wagner Meira Jr., Mohammed J. Zaki
Towards a Better Quality Metric for Graph Cluster Evaluation. J. Inf. Data Manag. 3 (3) (2012)
Mohammad Al Hasan, Jun Huan, Jake Yue Chen, Mohammed J. Zaki
Biological knowledge discovery and data mining. Sci. Program. 20 (1) (2012)
Hilmi Yildirim, Vineet Chaoji, Mohammed J. Zaki
GRAIL: a scalable index for reachability queries in very large graphs. VLDB J. 21 (4) (2012)
Geng Li, Murat Semerci, Bülent Yener, Mohammed J. Zaki
Effective graph classification based on topological and label attributes. Stat. Anal. Data Min. 5 (4) (2012)
Pranay Anchuri, Mohammed J. Zaki, Omer Barkol, Ruth Bergman, Yifat Felder, Shahar Golan, Arik Sityon
Graph mining for discovering infrastructure patterns in configuration management databases. Knowl. Inf. Syst. 33 (3) (2012)
Geng Li, Mohammed J. Zaki
Sampling minimal frequent boolean (DNF) patterns. KDD (2012)
Medha Atre, Vineet Chaoji, Mohammed J. Zaki
BitPath -- Label Order Constrained Reachability Queries over Large Graphs CoRR (2012)
Arlei Silva, Wagner Meira Jr., Mohammed J. Zaki
Mining Attribute-structure Correlated Patterns in Large Attributed Graphs CoRR (2012)
Arlei Silva, Wagner Meira Jr., Mohammed J. Zaki
Mining Attribute-structure Correlated Patterns in Large Attributed Graphs. Proc. VLDB Endow. 5 (5) (2012)
Hélio Marcos Paz de Almeida, Dorgival Olavo Guedes Neto, Wagner Meira Jr., Mohammed J. Zaki
Is There a Best Quality Metric for Graph Clusters? ECML/PKDD (1) (2011)
Mohammad Al Hasan, Saeed Salem, Mohammed J. Zaki
SimClus: an effective algorithm for clustering with a lower bound on similarity. Knowl. Inf. Syst. 28 (3) (2011)
Pranay Anchuri, Mohammed J. Zaki, Omer Barkol, Ruth Bergman, Yifat Felder, Shahar Golan, Arik Sityon
Infrastructure Pattern Discovery in Configuration Management Databases via Large Sparse Graph Mining. ICDM (2011)
Mohammed J. Zaki, Christopher D. Carothers, Boleslaw K. Szymanski
VOGUE: A variable order hidden Markov model with duration based on frequent sequence mining. ACM Trans. Knowl. Discov. Data 4 (1) (2010)
Jierui Xie, Boleslaw K. Szymanski, Mohammed J. Zaki
Learning Dissimilarities for Categorical Symbols. FSDM (2010)
Saeed Salem, Mohammed J. Zaki, Chris Bystroff
FlexSnap: Flexible Non-sequential Protein Structure Alignment. Algorithms Mol. Biol. 5 (2010)
Neha Goel, Michael S. Hsiao, Naren Ramakrishnan, Mohammed J. Zaki
Mining Complex Boolean Expressions for Sequential Equivalence Checking. Asian Test Symposium (2010)
Medha Atre, Vineet Chaoji, Mohammed J. Zaki, James A. Hendler
Matrix "Bit" loaded: a scalable lightweight join query processor for RDF data. WWW (2010)
Mohammed J. Zaki
Practical Graph Mining. ICCS (2010)
Karam Gouda, Mosab Hassaan, Mohammed J. Zaki
Prism: An effective approach for frequent sequence mining via prime-block encoding. J. Comput. Syst. Sci. 76 (1) (2010)
Arlei Silva, Wagner Meira Jr., Mohammed J. Zaki
Structural correlation pattern mining for large graphs. MLG@KDD (2010)

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Publication Activity (10 Years)

Top Topics

Top Venues

Mohammed J. Zaki