Badri Adhikari

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 18

Top Topics

Convolutional Neural Networks

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Bishal Shrestha, Griwan Khakurel, Kritika Simkhada, Badri Adhikari
Adversarial sample generation and training using geometric masks for accurate and resilient license plate character recognition. CoRR (2023)
Badri Adhikari
Thinking beyond chatbots' threat to education: Visualizations to elucidate the writing and coding process. CoRR (2023)
Jacob Barger, Badri Adhikari
New Labeling Methods for Deep Learning Real-Valued Inter-Residue Distance Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Bikash Shrestha, Badri Adhikari
Scoring protein sequence alignments using deep learning. Bioinform. 38 (11) (2022)
Badri Adhikari, Bikash Shrestha, Matthew Bernardini, Jie Hou, Jamie Lea
DISTEVAL: a web server for evaluating predicted protein distances. BMC Bioinform. 22 (1) (2021)
Tianqi Wu, Jie Hou, Badri Adhikari, Jianlin Cheng
Analysis of several key factors influencing deep learning-based inter-residue contact prediction. Bioinform. 36 (4) (2020)
Badri Adhikari
DEEPCON: protein contact prediction using dilated convolutional neural networks with dropout. Bioinform. 36 (2) (2020)
Jie Hou, Badri Adhikari, Jianlin Cheng
DeepSF: Deep Convolutional Neural Network for Mapping Protein Sequences to Folds. BCB (2018)
Badri Adhikari, Jie Hou, Jianlin Cheng
DNCON2: improved protein contact prediction using two-level deep convolutional neural networks. Bioinform. 34 (9) (2018)
Badri Adhikari, Jianlin Cheng
CONFOLD2: improved contact-driven ab initio protein structure modeling. BMC Bioinform. 19 (1) (2018)
Jie Hou, Badri Adhikari, Jianlin Cheng
DeepSF: deep convolutional neural network for mapping protein sequences to folds. Bioinform. 34 (8) (2018)
Renzhi Cao, Badri Adhikari, Debswapna Bhattacharya, Miao Sun, Jie Hou, Jianlin Cheng
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques. Bioinform. 33 (4) (2017)
Haiou Li, Jie Hou, Badri Adhikari, Qiang Lyu, Jianlin Cheng
Deep learning methods for protein torsion angle prediction. BMC Bioinform. 18 (1) (2017)
Jie Hou, Badri Adhikari, Jianlin Cheng
DeepSF: deep convolutional neural network for mapping protein sequences to folds. CoRR (2017)
Badri Adhikari, Jianlin Cheng
Improved protein structure reconstruction using secondary structures, contacts at higher distance thresholds, and non-contacts. BMC Bioinform. 18 (1) (2017)
Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling. Bioinform. 32 (13) (2016)
Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
ConEVA: a toolbox for comprehensive assessment of protein contacts. BMC Bioinform. 17 (2016)
Renzhi Cao, Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
Large-scale model quality assessment for improving protein tertiary structure prediction. Bioinform. 31 (12) (2015)