Xiaoqi Zheng

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 20

Top Topics

Feature Extraction

Cancer Diagnosis

Gene Expression Data

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Xiaoqi Zheng, Jia Lu
Embedding enhancement with foreground feature alignment and primitive knowledge for few-shot learning. Eng. Appl. Artif. Intell. 135 (2024)
Siqi Gao, Hanwen Zhu, Kangwen Cai, Leiqin Liu, Zhiqiang Zhang, Yi Ding, Yaochen Xu, Xiaoqi Zheng, Jiantao Shi
TRAmHap: accurate prediction of transcriptional activity from DNA methylation haplotypes in bisulfite-sequencing data. Briefings Bioinform. 24 (4) (2023)
Yifan Yang, Haoyuan Liu, Yi Liu, Liyuan Zhou, Xiaoqi Zheng, Rongxian Yue, David L. Mattson, Srividya Kidambi, Mingyu Liang, Pengyuan Liu, Xiaoqing Pan
-value and its adjustments in DNA methylation studies. Briefings Bioinform. 24 (4) (2023)
Tao Wu, Yao Dai, Yue Xu, Jie Zheng, Shuting Chen, Yinuo Zhang, Peng Tian, Xiaoqi Zheng, Haiyun Wang
ExosomePurity: tumour purity deconvolution in serum exosomes based on miRNA signatures. Briefings Bioinform. 24 (3) (2023)
Nana Wei, Yating Nie, Lin Liu, Xiaoqi Zheng, Hua-Jun Wu
Secuer: Ultrafast, scalable and accurate clustering of single-cell RNA-seq data. PLoS Comput. Biol. 18 (12) (2022)
Nana Wei, Yijing Zhu, Yating Nie, Shiyu Fan, Yuanchen Sun, Xiaoqi Zheng
Purification of tumor methylomes through residual decomposition. BIBM (2022)
Yi Ding, Kangwen Cai, Leiqin Liu, Zhiqiang Zhang, Xiaoqi Zheng, Jiantao Shi
mHapTk: a comprehensive toolkit for the analysis of DNA methylation haplotypes. Bioinform. 38 (22) (2022)
Chenye Wang, Junhan Shi, Jiansheng Cai, Yusen Zhang, Xiaoqi Zheng, Naiqian Zhang
DriverRWH: discovering cancer driver genes by random walk on a gene mutation hypergraph. BMC Bioinform. 23 (1) (2022)
Zhiqiang Zhang, Yuhao Dan, Yaochen Xu, Jiarui Zhang, Xiaoqi Zheng, Jiantao Shi
The DNA methylation haplotype (mHap) format and mHapTools. Bioinform. 37 (24) (2021)
Xiaoqi Zheng, Yingfan Tao, Ruikai Zhang, Wenming Yang, Qingmin Liao
TimNet: A text-image matching network integrating multi-stage feature extraction with multi-scale metrics. Neurocomputing 465 (2021)
Yufang Qin, Weiwei Zhang, Xiaoqiang Sun, Siwei Nan, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng
Deconvolution of heterogeneous tumor samples using partial reference signals. PLoS Comput. Biol. 16 (11) (2020)
Weiwei Zhang, Ziyi Li, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng
Detection of differentially methylated CpG sites between tumor samples with uneven tumor purities. Bioinform. 36 (7) (2020)
Tianlei Xu, Xiaoqi Zheng, Ben Li, Peng Jin, Zhaohui S. Qin, Hao Wu
A comprehensive review of computational prediction of genome-wide features. Briefings Bioinform. 21 (1) (2020)
Dong Wei, Chuanying Liu, Xiaoqi Zheng, Yushuang Li
Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model. BMC Bioinform. 20 (1) (2019)
Haixia Dou, Yun Fang, Xiaoqi Zheng
Universal informative CpG sites for inferring tumor purity from DNA methylation microarray data. J. Bioinform. Comput. Biol. 16 (3) (2018)
Qiudi Zhao, Xiaoqi Zheng, Siqi Zhou
Exploration on education model of international engineering competencies for undergraduate students through Project-Based Learning: A case study from China. ICEED (2018)
Liqi Li, Qifa Luo, Weidong Xiao, Jinhui Li, Shiwen Zhou, Yongsheng Li, Xiaoqi Zheng, Hua Yang
A machine-learning approach for predicting palmitoylation sites from integrated sequence-based features. J. Bioinform. Comput. Biol. 15 (1) (2017)
Weiwei Zhang, Hao Feng, Hao Wu, Xiaoqi Zheng
Accounting for tumor purity improves cancer subtype classification from DNA methylation data. Bioinform. 33 (17) (2017)
Naiqian Zhang, Hua-Jun Wu, Weiwei Zhang, Jun Wang, Hao Wu, Xiaoqi Zheng
Predicting tumor purity from methylation microarray data. Bioinform. 31 (21) (2015)
Naiqian Zhang, Haiyun Wang, Yun Fang, Jun Wang, Xiaoqi Zheng, Xiaole Shirley Liu
Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model. PLoS Comput. Biol. 11 (9) (2015)
Xiaoqing Yu, Hongyun Gao, Xiaoqi Zheng, Chun Li, Jun Wang
A computational method of predicting regulatory interactions in Arabidopsis based on gene expression data and sequence information. Comput. Biol. Chem. 51 (2014)
Liqi Li, Sanjiu Yu, Weidong Xiao, Yongsheng Li, Lan Huang, Xiaoqi Zheng, Shiwen Zhou, Hua Yang
Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM. BMC Bioinform. 15 (2014)
Jie Zhu, Yufang Qin, Taigang Liu, Jun Wang, Xiaoqi Zheng
Prioritization of candidate disease genes by topological similarity between disease and protein diffusion profiles. BMC Bioinform. 14 (S-5) (2013)
Chun Li, Hong Ma, Yang Zhou, Xiaolei Wang, Xiaoqi Zheng
Similarity analysis of DNA sequences based on the weighted pseudo-entropy. J. Comput. Chem. 32 (4) (2011)
Xiaoqi Zheng, Chun Li, Jun Wang
An information-theoretic approach to the prediction of protein structural class. J. Comput. Chem. 31 (6) (2010)