Ming Hu

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 8

Top Topics

Bayesian Inference

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Lindsay Lee, Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu, Ziyin Chen, Shreya Mishra, Bing Ren, Yun Li, Ming Hu
SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data. Briefings Bioinform. 24 (5) (2023)
Le Huang, Yuchen Yang, Gang Li, Minzhi Jiang, Jia Wen, Armen Abnousi, Jonathan D. Rosen, Ming Hu, Yun Li
A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data. Briefings Bioinform. 23 (3) (2022)
Rongrong Zhang, Ming Hu, Yu Zhu, Zhaohui S. Qin, Ke Deng, Jun S. Liu
Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (2) (2020)
Ivan Juric, Miao Yu, Armen Abnousi, Ramya Raviram, Rongxin Fang, Yuan Zhao, Yan-Xiao Zhang, Yunjiang Qiu, Yuchen Yang, Yun Li, Bing Ren, Ming Hu
MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments. PLoS Comput. Biol. 15 (4) (2019)
Zhe Sun, Ting Wang, Ke Deng, Xiao-Feng Wang, Robert Lafyatis, Ying Ding, Ming Hu, Wei Chen
DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data. Bioinform. 34 (1) (2018)
Joshua S. Martin, Zheng Xu, Alex P. Reiner, Karen L. Mohlke, Patrick F. Sullivan, Bing Ren, Ming Hu, Yun Li
HUGIn: Hi-C Unifying Genomic Interrogator. Bioinform. 33 (23) (2017)
Zheng Xu, Guosheng Zhang, Fulai Jin, Mengjie Chen, Terrence S. Furey, Patrick F. Sullivan, Zhaohui S. Qin, Ming Hu, Yun Li
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data. Bioinform. 32 (5) (2016)
Zheng Xu, Guosheng Zhang, Cong Wu, Yun Li, Ming Hu
FastHiC: a fast and accurate algorithm to detect long-range chromosomal interactions from Hi-C data. Bioinform. 32 (17) (2016)
Ming Hu, Ke Deng, Zhaohui S. Qin, Jun S. Liu
Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data. Quant. Biol. 1 (2) (2013)
Ming Hu, Ke Deng, Zhaohui S. Qin, Jesse R. Dixon, Siddarth Selvaraj, Jennifer Fang, Bing Ren, Jun S. Liu
Bayesian Inference of Spatial Organizations of Chromosomes. PLoS Comput. Biol. 9 (1) (2013)
Ming Hu, Ke Deng, Siddarth Selvaraj, Zhaohui S. Qin, Bing Ren, Jun S. Liu
HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinform. 28 (23) (2012)
Ming Hu, Yu Zhu, Jeremy M. G. Taylor, Jun S. Liu, Zhaohui S. Qin
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq. Bioinform. 28 (1) (2012)
Zhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data. BMC Bioinform. 11 (2010)