Arul M. Chinnaiyan

Publication Activity (10 Years)

Years Active: 2002-2018
Publications (10 Years): 4

Top Topics

Sequence Alignment

Cancer Treatment

Clinical Setting

Markup Language

Top Venues

Publications

Alexander Gawronski, Michael Uhl, Yajia Zhang, Yen-Yi Lin, Yashar S. Niknafs, Varune R. Ramnarine, Rohit Malik, Felix Feng, Arul M. Chinnaiyan, Colin C. Collins, Süleyman Cenk Sahinalp, Rolf Backofen
MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions. Bioinform. 34 (18) (2018)
Dan R. Robinson, Yi-Mi Wu, Robert J. Lonigro, Pankaj Vats, Erin Cobain, Jessica Everett, Xuhong Cao, Erica Rabban, Chandan Kumar-Sinha, Victoria Raymond, Scott Schuetze, Ajjai Alva, Javed Siddiqui, Rashmi Chugh, Francis Worden, Mark M. Zalupski, Jeffrey W. Innis, Rajen J. Mody, Scott A. Tomlins, David Lucas, Laurence H. Baker, Nithya Ramnath, Ann F. Schott, Daniel F. Hayes, Joseph Vijai, Kenneth Offit, Elena M. Stoffel, J. Scott Roberts, David C. Smith, Lakshmi P. Kunju, Moshe Talpaz, Marcin Cieslik, Arul M. Chinnaiyan
Integrative clinical genomics of metastatic cancer. Nat. 548 (7667) (2017)
Brendan A. Veeneman, Sudhanshu Shukla, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Alexey I. Nesvizhskii
Two-pass alignment improves novel splice junction quantification. Bioinform. 32 (1) (2016)
Yang Shi, Arul M. Chinnaiyan, Hui Jiang
rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data. Bioinform. 31 (13) (2015)
Shanker Kalyana-Sundaram, Achiraman Shanmugam, Arul M. Chinnaiyan
Gene Fusion Markup Language: a prototype for exchanging gene fusion data. BMC Bioinform. 13 (2012)
Brendan A. Veeneman, Matthew K. Iyer, Arul M. Chinnaiyan
Oculus: faster sequence alignment by streaming read compression. BMC Bioinform. 13 (2012)
Matthew K. Iyer, Arul M. Chinnaiyan, Christopher A. Maher
ChimeraScan: a tool for identifying chimeric transcription in sequencing data. Bioinform. 27 (20) (2011)
Zhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data. BMC Bioinform. 11 (2010)
You Jung Kim, Nikhil Teletia, Victor Ruotti, Christopher A. Maher, Arul M. Chinnaiyan, Ron M. Stewart, James A. Thomson, Jignesh M. Patel
ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches. Bioinform. 25 (11) (2009)
Hyungwon Choi, Ronglai Shen, Arul M. Chinnaiyan, Debashis Ghosh
A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments. BMC Bioinform. 8 (2007)
Jomol P. Mathew, Barry S. Taylor, Gary D. Bader, Saiju Pyarajan, Marco Antoniotti, Arul M. Chinnaiyan, Chris Sander, Steven J. Burakoff, Bud Mishra
From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research. PLoS Comput. Biol. 3 (2) (2007)
Ronglai Shen, Debashis Ghosh, Arul M. Chinnaiyan, Zhaoling Meng
Eigengene-based linear discriminant model for tumor classification using gene expression microarray data. Bioinform. 22 (21) (2006)
Robert Kim, Francesca Demichelis, Jeffery Tang, Alberto Riva, Ronglai Shen, Doug F. Gibbs, Vasudeva Mahavishno, Arul M. Chinnaiyan, Mark A. Rubin
Internet-based profiler system as integrative framework to support translational research. BMC Bioinform. 6 (2005)
Debashis Ghosh, Arul M. Chinnaiyan
Mixture modelling of gene expression data from microarray experiments. Bioinform. 18 (2) (2002)