Oculus: faster sequence alignment by streaming read compression.
Brendan A. VeenemanMatthew K. IyerArul M. ChinnaiyanPublished in: BMC Bioinform. (2012)
Keyphrases
- sequence alignment
- pairwise
- dynamic programming
- compression ratio
- phylogenetic analysis
- data compression
- gpu accelerated
- compression algorithm
- image compression
- data streams
- real time
- binding sites
- streaming data
- memory efficient
- multiple alignment
- protein sequences
- amino acids
- genetic algorithm
- bitstream
- medical images
- multiple sequence alignment
- machine learning