Arzucan Özgür

ORCID

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 81

Top Venues

Publications

Salih Furkan Akkurt, Onur Güngör, Büsra Marsan, Tunga Gungor, Balkiz Öztürk Basaran, Arzucan Özgür, Susan Üsküdarli
Evaluating the Quality of a Corpus Annotation Scheme Using Pretrained Language Models. LREC/COLING (2024)
Merve Ünlü Menevse, Yusufcan Manav, Ebru Arisoy, Arzucan Özgür
Dealing with Data Scarcity in Spoken Question Answering. LREC/COLING (2024)
Hasin Rehana, Benu Bansal, Nur Bengisu Çam, Jie Zheng, Yongqun He, Arzucan Özgür, Junguk Hur
Nested Named Entity Recognition using Multilayer BERT-based Model. CLEF (Working Notes) (2024)
Gökçe Uludogan, Somaiyeh Dehghan, Inanç Arin, Elif Erol, Berrin Yanikoglu, Arzucan Özgür
Overview of the Hate Speech Detection in Turkish and Arabic Tweets (HSD-2Lang) Shared Task at CASE 2024. CASE (2024)
Gökçe Uludogan, Atif Emre Yüksel, Ümit Tunçer, Burak Isik, Yasemin Korkmaz, Didar Akar, Arzucan Özgür
Detecting Hate Speech in Turkish Print Media: A Corpus and A Hybrid Approach with Target-oriented Linguistic Knowledge. CASE (2024)
Kazim Kivanç Eren, Esra Çinar, Hamza Umut Karakurt, Arzucan Özgür
Improving the filtering of false positive single nucleotide variations by combining genomic features with quality metrics. Bioinform. 39 (12) (2023)
Melih Barsbey, Riza Özçelik, Alperen Bag, Berk Atil, Arzucan Özgür, Elif Ozkirimli
A Computational Software for Training Robust Drug-Target Affinity Prediction Models: pydebiaseddta. J. Comput. Biol. 30 (11) (2023)
Inanç Arin, Zeynep Isik, Seçilay Kutal, Somaiyeh Dehghan, Arzucan Özgür, Berrin Yanikoglu
SIU2023-NST - Hate Speech Detection Contest. SIU (2023)
Gonul Ayci, Murat Sensoy, Arzucan Özgür, Pinar Yolum
Uncertainty-Aware Personal Assistant for Making Personalized Privacy Decisions. ACM Trans. Internet Techn. 23 (1) (2023)
Gönül Ayci, Arzucan Özgür, Murat Sensoy, Pinar Yolum
Can We Explain Privacy? IEEE Internet Comput. 27 (4) (2023)
Musa Ihtiyar, Ömer Özdemir, Mustafa Erengül, Arzucan Özgür
A Dataset for Investigating the Impact of Context for Offensive Language Detection in Tweets. EMNLP (Findings) (2023)
Hasin Rehana, Nur Bengisu Çam, Mert Basmaci, Yongqun He, Arzucan Özgür, Junguk Hur
Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text. CoRR (2023)
Gonul Ayci, Arzucan Özgür, Murat Sensoy, Pinar Yolum
Explain to Me: Towards Understanding Privacy Decisions. AAMAS (2023)
Suzan Uskudarli, Muhammet Sen, Salih Furkan Akkurt, Merve Gürbüz, Onur Güngör, Arzucan Özgür, Tunga Güngör
TULAP - An Accessible and Sustainable Platform for Turkish Natural Language Processing Resources. EACL (System Demonstrations) (2023)
Riza Özçelik, Alperen Bag, Berk Atil, Melih Barsbey, Arzucan Özgür, Elif Ozkirimli
A Framework for Improving the Generalizability of Drug-Target Affinity Prediction Models. J. Comput. Biol. 30 (11) (2023)
Gonul Ayci, Pinar Yolum, Arzucan Özgür, Murat Sensoy
Explain to Me: Towards Understanding Privacy Decisions. CoRR (2023)
Inci M. Baytas, Yifan Peng, Arzucan Özgür
Editorial: Pattern recognition for healthcare analytics. Frontiers Digit. Health 5 (2023)
Arda Çelebi, Arzucan Özgür
Cluster-based mention typing for named entity disambiguation. Nat. Lang. Eng. 28 (1) (2022)
Gökçe Uludogan, Elif Özkirimli, Kutlu Ö. Ülgen, Nilgün Karali, Arzucan Özgür
Exploiting Pretrained Biochemical Language Models for Targeted Drug Design. CoRR (2022)
Büsra Marsan, Salih Furkan Akkurt, Muhammet Sen, Merve Gürbüz, Onur Güngör, Saziye Betül Özates, Suzan Üsküdarli, Arzucan Özgür, Tunga Güngör, Balkiz Öztürk
Enhancements to the BOUN Treebank Reflecting the Agglutinative Nature of Turkish. ALTNLP (2022)
Merve Ünlü Menevse, Yusufcan Manav, Ebru Arisoy, Arzucan Özgür
A Framework for Automatic Generation of Spoken Question-Answering Data. EMNLP (Findings) (2022)
Saziye Betül Özates, Arzucan Özgür, Tunga Güngör, Balkiz Öztürk Basaran
A Hybrid Deep Dependency Parsing Approach Enhanced With Rules and Morphology: A Case Study for Turkish. IEEE Access 10 (2022)
Büsra Marsan, Salih Furkan Akkurt, Muhammet Sen, Merve Gürbüz, Onur Güngör, Saziye Betül Özates, Suzan Üsküdarli, Arzucan Özgür, Tunga Güngör, Balkiz Öztürk
Enhancements to the BOUN Treebank Reflecting the Agglutinative Nature of Turkish. CoRR (2022)
Saziye Betül Özates, Arzucan Özgür, Tunga Gungor, Özlem Çetinoglu
Improving Code-Switching Dependency Parsing with Semi-Supervised Auxiliary Tasks. NAACL-HLT (Findings) (2022)
Nailcan Kara, Yagiz Levent Gume, Umit Tigrak, Gokce Ezeroglu, Serdar Mola, Omer Burak Akgun, Arzucan Özgür
A SHAP-based Active Learning Approach for Creating High-Quality Training Data. Big Data (2022)
Mustafa Melih Mutlu, Arzucan Özgür
A Dataset and BERT-based Models for Targeted Sentiment Analysis on Turkish Texts. ACL (student) (2022)
Utku Türk, Furkan Atmaca, Saziye Betül Özates, Gözde Berk, Seyyit Talha Bedir, Abdullatif Köksal, Balkiz Öztürk Basaran, Tunga Güngör, Arzucan Özgür
Resources for Turkish dependency parsing: introducing the BOUN Treebank and the BoAT annotation tool. Lang. Resour. Evaluation 56 (1) (2022)
M. Melih Mutlu, Arzucan Özgür
A Dataset and BERT-based Models for Targeted Sentiment Analysis on Turkish Texts. CoRR (2022)
Gonul Ayci, Murat Sensoy, Arzucan Özgür, Pinar Yolum
A Self-aware Personal Assistant for Making Personalized Privacy Decisions. CoRR (2022)
Melik Masarifoglu, Umit Tigrak, Sefa Hakyemez, Guven Gul, Erdal Bozan, Ali Hakan Buyuklu, Arzucan Özgür
Sentiment Analysis of Customer Comments in Banking using BERT-based Approaches. SIU (2021)
Yi Huang, Buse Giledereli, Abdullatif Köksal, Arzucan Özgür, Elif Ozkirimli
PIDNA at BioASQ MESINESP: Hybrid Semantic Indexing for Biomedical Articles in Spanish. CLEF (Working Notes) (2021)
Abdullatif Köksal, Yusuf Yüksel, Bekir Yildirim, Arzucan Özgür
BOUN at SemEval-2021 Task 9: Text Augmentation Techniques for Fact Verification in Tabular Data. SemEval@ACL/IJCNLP (2021)
Yi Huang, Buse Giledereli, Abdullatif Köksal, Arzucan Özgür, Elif Ozkirimli
Balancing Methods for Multi-label Text Classification with Long-Tailed Class Distribution. EMNLP (1) (2021)
Riza Özçelik, Alperen Bag, Berk Atil, Arzucan Özgür, Elif Özkirimli
DebiasedDTA: Model Debiasing to Boost Drug-Target Affinity Prediction. CoRR (2021)
Arda Çelebi, Arzucan Özgür
Cluster-based Mention Typing for Named Entity Disambiguation. CoRR (2021)
Yi Huang, Buse Giledereli, Abdullatif Köksal, Arzucan Özgür, Elif Ozkirimli
Balancing Methods for Multi-label Text Classification with Long-Tailed Class Distribution. CoRR (2021)
Abdullatif Köksal, Arzucan Özgür
Twitter Dataset and Evaluation of Transformers for Turkish Sentiment Analysis. SIU (2021)
Hakime Öztürk, Arzucan Özgür, Philippe Schwaller, Teodoro Laino, Elif Ozkirimli Olmez
Exploring Chemical Space using Natural Language Processing Methodologies for Drug Discovery. CoRR (2020)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) (2020)
Abdullatif Köksal, Hilal Dönmez, Riza Özçelik, Elif Ozkirimli, Arzucan Özgür
Vapur: A Search Engine to Find Related Protein - Compound Pairs in COVID-19 Literature. NLP4COVID@EMNLP (2020)
Saziye Betül Özates, Arzucan Özgür, Tunga Güngör, Balkiz Öztürk
A Hybrid Approach to Dependency Parsing: Combining Rules and Morphology with Deep Learning. CoRR (2020)
Hilal Dönmez, Abdullatif Köksal, Elif Özkirimli, Arzucan Özgür
BOUN-REX at CLEF-2020 ChEMU Task 2: Evaluating Pretrained Transformers for Event Extraction. CLEF (Working Notes) (2020)
Abdullatif Köksal, Hilal Dönmez, Riza Özçelik, Elif Ozkirimli, Arzucan Özgür
Vapur: A Search Engine to Find Related Protein - Compound Pairs in COVID-19 Literature. CoRR (2020)
Abdullatif Köksal, Arzucan Özgür
The RELX Dataset and Matching the Multilingual Blanks for Cross-Lingual Relation Classification. CoRR (2020)
Abdullatif Köksal, Arzucan Özgür
The RELX Dataset and Matching the Multilingual Blanks for Cross-lingual Relation Classification. EMNLP (Findings) (2020)
Utku Türk, Furkan Atmaca, Saziye Betül Özates, Gözde Berk, Seyyit Talha Bedir, Abdullatif Köksal, Balkiz Öztürk Basaran, Tunga Güngör, Arzucan Özgür
Resources for Turkish Dependency Parsing: Introducing the BOUN Treebank and the BoAT Annotation Tool. CoRR (2020)
Ilknur Karadeniz, Ömer Faruk Tuna, Arzucan Özgür
BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes. BioNLP-OST@EMNLP-IJNCLP (2019)
Melike Esma Ilter, Lale Akarun, Arzucan Özgür
Identifying Image Related Sentences in News Articles. SIU (2019)
Hakime Öztürk, Elif Ozkirimli Olmez, Arzucan Özgür
WideDTA: prediction of drug-target binding affinity. CoRR (2019)
Ilknur Karadeniz, Arzucan Özgür
Linking entities through an ontology using word embeddings and syntactic re-ranking. BMC Bioinform. 20 (1) (2019)
N. Ozlem Ozcan, Arzucan Özgür, Fikret Gürgen
Statistical representation models for mutation information within genomic data. BMC Bioinform. 20 (1) (2019)
Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation 2019 (2019)
Atif Emre Yüksel, Yacsar Alim Türkmen, Arzucan Özgür, Berna Altinel
Turkish Tweet Classification with Transformer Encoder. RANLP (2019)
Utku Türk, Furkan Atmaca, Saziye Betül Özates, Abdullatif Köksal, Balkiz Öztürk Basaran, Tunga Gungor, Arzucan Özgür
Turkish Treebanking: Unifying and Constructing Efforts. LAW@ACL (2019)
Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur
Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels. BMC Bioinform. (21) (2019)
Hakime Öztürk, Arzucan Özgür, Elif Ozkirimli Olmez
A chemical language based approach for protein - ligand interaction prediction. CoRR (2018)
Saziye Betül Özates, Arzucan Özgür, Tunga Gungor, Balkiz Öztürk
A Morphology-Based Representation Model for LSTM-Based Dependency Parsing of Agglutinative Languages. CoNLL Shared Task (2) (2018)
Hakime Öztürk, Elif Ozkirimli Olmez, Arzucan Özgür
DeepDTA: Deep Drug-Target Binding Affinity Prediction. CoRR (2018)
Junguk Hur, Arzucan Özgür, Yongqun He
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs. J. Biomed. Semant. 9 (1) (2018)
Hakime Öztürk, Elif Ozkirimli Olmez, Arzucan Özgür
A novel methodology on distributed representations of proteins using their interacting ligands. Bioinform. 34 (13) (2018)
Eda Okur, Hakan Demir, Arzucan Özgür
Named Entity Recognition on Twitter for Turkish using Semi-supervised Learning with Word Embeddings. CoRR (2018)
Hakime Öztürk, Arzucan Özgür, Elif Ozkirimli Olmez
DeepDTA: deep drug-target binding affinity prediction. Bioinform. 34 (17) (2018)
Arda Çelebi, Arzucan Özgür
Segmenting hashtags and analyzing their grammatical structure. J. Assoc. Inf. Sci. Technol. 69 (5) (2018)
Deger Ayata, Murat Saraclar, Arzucan Özgür
Political opinion/sentiment prediction via long short term memory recurrent neural networks on Twitter. SIU (2017)
Arda Çelebi, Arzucan Özgür
Description of the BOUN System for the Trilingual Entity Detection and Linking Tasks at TAC KBP 2017. TAC (2017)
Deger Ayata, Murat Saraclar, Arzucan Özgür
Turkish tweet sentiment analysis with word embedding and machine learning. SIU (2017)
Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur
Extracting Adverse Drug Reactions using Deep Learning and Dictionary Based Approaches. TAC (2017)
Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür
Automatic query generation using word embeddings for retrieving passages describing experimental methods. Database J. Biol. Databases Curation 2017 (2017)
Deger Ayata, Murat Saraclar, Arzucan Özgür
BUSEM at SemEval-2017 Task 4A Sentiment Analysis with Word Embedding and Long Short Term Memory RNN Approaches. SemEval@ACL (2017)
Junguk Hur, Arzucan Özgür, Yongqun He
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks. J. Biomed. Semant. 8 (1) (2017)
Gizem Sogancioglu, Hakime Öztürk, Arzucan Özgür
BIOSSES: a semantic sentence similarity estimation system for the biomedical domain. Bioinform. 33 (14) (2017)
Çagil Sönmez, Arzucan Özgür, Erdem Yörük
Towards Building a Political Protest Database to Explain Changes in the Welfare State. LaTeCH@ACL (2016)
Eda Okur, Hakan Demir, Arzucan Özgür
Named Entity Recognition on Twitter for Turkish using Semi-supervised Learning with Word Embeddings. LREC (2016)
Erinç Gökdeniz, Arzucan Özgür, Resit Canbeyli
Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study. Frontiers Neuroinformatics 10 (2016)
Saziye Betül Özates, Arzucan Özgür, Dragomir R. Radev
Sentence Similarity based on Dependency Tree Kernels for Multi-document Summarization. LREC (2016)
Mert Tiftikci, Hakan Sahin, Berfu Büyüköz, Alper Yayikçi, Arzucan Özgür
Ontology-Based Categorization of Bacteria and Habitat Entities using Information Retrieval Techniques. BioNLP (Shared Task) (2016)
Hakime Öztürk, Elif Ozkirimli Olmez, Arzucan Özgür
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction. BMC Bioinform. 17 (2016)
Arzucan Özgür, Junguk Hur, Yongqun He
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature. BioData Min. 9 (2016)
Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks. ICBO/BioCreative (2016)
Arda Çelebi, Arzucan Özgür
Segmenting Hashtags using Automatically Created Training Data. LREC (2016)
Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation 2016 (2016)
Arzucan Özgür, Junguk Hur, Yongqun He
Extension of the Interaction Network Ontology for Literature Mining of Gene-gene Interaction Networks from Sentences with Multiple Interaction Keywords. BDM2I@ISWC (2015)
Ilknur Karadeniz, Arzucan Özgür
Detection and categorization of bacteria habitats using shallow linguistic analysis. BMC Bioinform. 16 (S10) (2015)
Wallace K. B. Chan, Hongjiu Zhang, Jianyi Yang, Jeffrey R. Brender, Junguk Hur, Arzucan Özgür, Yang Zhang
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations. Bioinform. 31 (18) (2015)
Caner Derici, Kerem Çelik, Ekrem Kutbay, Yigit Aydin, Tunga Güngör, Arzucan Özgür, Günizi Kartal
Question Analysis for a Closed Domain Question Answering System. CICLing (2) (2015)
Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions. J. Biomed. Semant. 6 (2015)
Cagil Sonmez, Arzucan Özgür
A Graph-based Approach for Contextual Text Normalization. EMNLP (2014)
Hakan Demir, Arzucan Özgür
Improving Named Entity Recognition for Morphologically Rich Languages Using Word Embeddings. ICMLA (2014)
Muhammed Yavuz Nuzumlali, Arzucan Özgür
Analyzing Stemming Approaches for Turkish Multi-Document Summarization. EMNLP (2014)
Caner Derici, Kerem Çelik, Arzucan Özgür, Tunga Gungor, Ekrem Kutbay, Yigit Aydin, Günizi Kartal
Rule-based focus extraction in Turkish question answering systems. SIU (2014)
Arda Çelebi, Arzucan Özgür
Self-training a Constituency Parser using n-gram Trees. LREC (2014)
Burak Aydin, Arzucan Özgür
Expanding machine translation training data with an out-of-domain corpus using language modeling based vocabulary saturation. AMTA (2014)
Arda Çelebi, Arzucan Özgür
N-gram Parsing for Jointly Training a Discriminative Constituency Parser. Polibits 47 (2013)
Cüneyd Murad Özsert, Arzucan Özgür
Word Polarity Detection Using a Multilingual Approach. CICLing (2) (2013)
Nadin Kökciyan, Arda Çelebi, Arzucan Özgür, Suzan Üsküdarli
BOUNCE: Sentiment Classification in Twitter using Rich Feature Sets. SemEval@NAACL-HLT (2013)
Saliha Durmus Tekir, Tunahan Çakir, Emre Ardiç, Ali Semih Sayilirbas, Gökhan Konuk, Mithat Konuk, Hasret Sariyer, Azat Ugurlu, Ilknur Karadeniz, Arzucan Özgür, Fatih Erdogan Sevilgen, Kutlu Ö. Ülgen
PHISTO: pathogen-host interaction search tool. Bioinform. 29 (10) (2013)
Ilknur Karadeniz, Arzucan Özgür
Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules. BioNLP@ACL (Shared Task) (2013)
Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining. J. Biomed. Semant. 3 (2012)
Arzucan Özgür, Zuoshuang Xiang, Dragomir R. Radev, Yongqun He
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology. J. Biomed. Semant. 2 (S-2) (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)

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Publication Activity (10 Years)

Top Topics

Top Venues

Arzucan Özgür