Lawrence E. Hunter

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 29

Top Topics

Biomedical Data

Language Processing

Top Venues

Pacific Symposium on Biocomputing

Publications

Sagi Shaier, Lawrence E. Hunter, Katharina von der Wense
Desiderata for the Context Use of Question Answering Systems. CoRR (2024)
Sagi Shaier, Lawrence E. Hunter, Katharina von der Wense
It Is Not About What You Say, It Is About How You Say It: A Surprisingly Simple Approach for Improving Reading Comprehension. CoRR (2024)
Sagi Shaier, Kevin Bennett, Lawrence E. Hunter, Katharina von der Wense
Comparing Template-based and Template-free Language Model Probing. CoRR (2024)
Adrien Bibal, Nourah M. Salem, Rémi Cardon, Elizabeth K. White, Daniel E. Acuna, Robin Burke, Lawrence E. Hunter
RecSOI: recommending research directions using statements of ignorance. J. Biomed. Semant. 15 (1) (2024)
Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin Aaron Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn
Ontologizing health systems data at scale: making translational discovery a reality. npj Digit. Medicine 6 (2023)
Mayla R. Boguslav, Nourah M. Salem, Elizabeth K. White, Katherine J. Sullivan, Michael Bada, Teri L. Hernandez, Sonia M. Leach, Lawrence E. Hunter
Creating an ignorance-base: Exploring known unknowns in the scientific literature. J. Biomed. Informatics 143 (2023)
Sagi Shaier, Lawrence E. Hunter, Katharina von der Wense
Who Are All The Stochastic Parrots Imitating? They Should Tell Us! CoRR (2023)
Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter
An Open-Source Knowledge Graph Ecosystem for the Life Sciences. CoRR (2023)
Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Melissa A. Haendel, Asiyah Y. Lin, Blake Martin, Nicolas Matentzoglu, Daniella Meeker, Justin Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingman A. Zhang, Peter N. Robinson, Patrick Ryan, George Hripcsak, Tellen D. Bennett, Lawrence E. Hunter, Michael G. Kahn
Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality. CoRR (2022)
Brook E. Santangelo, Lucas A. Gillenwater, Nourah M. Salem, Lawrence E. Hunter
Molecular cartooning with knowledge graphs. Frontiers Bioinform. 2 (2022)
Tiffany J. Callahan, Adrianne L. Stefanski, Jin-Dong Kim, William A. Baumgartner Jr., Jordan M. Wyrwa, Lawrence E. Hunter
Knowledge-Driven Mechanistic Enrichment of the Preeclampsia Ignorome. CoRR (2022)
Mayla Boguslav, Negacy D. Hailu, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter
Concept recognition as a machine translation problem. BMC Bioinform. 22 (1) (2021)
Katherine J. Sullivan, Marisha Burden, Angela Keniston, Juan M. Banda, Lawrence E. Hunter
Characterization of Anonymous Physician Perspectives on COVID-19 Using Social Media Data. PSB (2021)
Cliff A. Joslyn, Sinan Aksoy, Tiffany J. Callahan, Lawrence E. Hunter, Brett A. Jefferson, Brenda Praggastis, Emilie A. H. Purvine, Ignacio J. Tripodi
Hypernetwork Science: From Multidimensional Networks to Computational Topology. CoRR (2020)
Xingmin Aaron Zhang, Amy Yates, Nicole A. Vasilevsky, Jean-Philippe F. Gourdine, Tiffany J. Callahan, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard L. Zhu, Justin Ramsdill, Christopher J. Mungall, Sebastian Köhler, Melissa A. Haendel, Clement J. McDonald, Daniel J. Vreeman, David B. Peden, Tellen D. Bennett, James A. Feinstein, Blake Martin, Adrianne L. Stefanski, Lawrence E. Hunter, Christopher G. Chute, Peter N. Robinson
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. npj Digit. Medicine 2 (2019)
Tiffany J. Callahan, Harrison Pielke-Lombardo, Ignacio J. Tripodi, Lawrence E. Hunter
Knowledge-based Biomedical Data Science 2019. CoRR (2019)
K. Bretonnel Cohen, Lawrence E. Hunter, Peter S. Pressman
P-Hacking Lexical Richness Through Definitions of "Type" and "Token". MedInfo (2019)
K. Bretonnel Cohen, Jingbo Xia, Pierre Zweigenbaum, Tiffany Callahan, Orin Hargraves, Foster R. Goss, Nancy Ide, Aurélie Névéol, Cyril Grouin, Lawrence E. Hunter
Three Dimensions of Reproducibility in Natural Language Processing. LREC (2018)
Mayla Boguslav, K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence E. Hunter
Improving precision in concept normalization. PSB (2018)
Tiffany J. Callahan, William A. Baumgartner Jr., Michael Bada, Adrianne L. Stefanski, Ignacio Tripodi, Elizabeth K. White, Lawrence E. Hunter
OWL-NETS: Transforming OWL representations for improved network inference. PSB (2018)
Kevin Bretonnel Cohen, Aurélie Névéol, Jingbo Xia, Negacy D. Hailu, Cyril Grouin, Lawrence E. Hunter, Pierre Zweigenbaum
Reproducibility in Biomedical Natural Language Processing. AMIA (2017)
Lawrence E. Hunter
Knowledge-based biomedical Data Science. Data Sci. 1 (1-2) (2017)
Ignacio Tripodi, Kevin Bretonnel Cohen, Lawrence E. Hunter
A semantic knowledge-base approach to drug-drug interaction discovery. BIBM (2017)
Prabha Yadav, Elisabetta Jezek, Pierrette Bouillon, Tiffany J. Callahan, Michael Bada, Lawrence E. Hunter, K. Bretonnel Cohen
Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement. MedInfo (2017)
Jason H. Moore, Steven F. Jennings, Casey S. Greene, Lawrence E. Hunter, Andy D. Perkins, ClarLynda R. Williams-DeVane, Donald C. Wunsch, Zhongming Zhao, Xiuzhen Huang
No-Boundary Thinking in Bioinformatics. PSB (2017)
K. Bretonnel Cohen, Foster R. Goss, Pierre Zweigenbaum, Lawrence E. Hunter
Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles. MedInfo (2017)
Michael Bada, Nicole A. Vasilevsky, William A. Baumgartner Jr., Melissa A. Haendel, Lawrence E. Hunter
Gold-standard ontology-based anatomical annotation in the CRAFT Corpus. Database J. Biol. Databases Curation 2017 (2017)
K. Bretonnel Cohen, Arrick Lanfranchi, Miji Joo-young Choi, Michael Bada, William A. Baumgartner Jr., Natalya Panteleyeva, Karin Verspoor, Martha Palmer, Lawrence E. Hunter
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. BMC Bioinform. 18 (1) (2017)
Christopher S. Funk, K. Bretonnel Cohen, Lawrence E. Hunter, Karin M. Verspoor
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition. J. Biomed. Semant. 7 (2016)
Kevin M. Livingston, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter
KaBOB: ontology-based semantic integration of biomedical databases. BMC Bioinform. 16 (2015)
Michael A. Hinterberg, David P. Kao, Michael R. Bristow, Lawrence E. Hunter, J. David Port, Carsten Görg
PEAX: Interactive Visual Analysis and Exploration of Complex Clinical Phenotype and Gene Expression Association. Pacific Symposium on Biocomputing (2015)
Stefano V. Albrecht, André da Motta Salles Barreto, Darius Braziunas, David L. Buckeridge, Heriberto Cuayáhuitl, Nina Dethlefs, Markus Endres, Amir-massoud Farahmand, Mark Fox, Lutz Frommberger, Sam Ganzfried, Yolanda Gil, Sébastien Guillet, Lawrence E. Hunter, Arnav Jhala, Kristian Kersting, George Dimitri Konidaris, Freddy Lécué, Sheila A. McIlraith, Sriraam Natarajan, Zeinab Noorian, David Poole, Rémi Ronfard, Alessandro Saffiotti, Arash Shaban-Nejad, Biplav Srivastava, Gerald Tesauro, Rosario Uceda-Sosa, Guy Van den Broeck, Martijn van Otterlo, Byron C. Wallace, Paul Weng, Jenna Wiens, Jie Zhang
Reports of the AAAI 2014 Conference Workshops. AI Mag. 36 (1) (2015)
Corinna Vehlow, David P. Kao, Michael R. Bristow, Lawrence E. Hunter, Daniel Weiskopf, Carsten Görg
Visual analysis of biological data-knowledge networks. BMC Bioinform. 16 (2015)
Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore
Training the Next Generation of Quantitative Biologists in the Era of Big Data. Pacific Symposium on Biocomputing (2015)
Darla Hewett, Michelle Whirl Carrillo, Lawrence E. Hunter, Russ B. Altman, Teri E. Klein
A Twentieth Anniversary Tribute to PSB. Pacific Symposium on Biocomputing (2015)
Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Lawrence E. Hunter, David A. Ross, James A. Foster, Jason H. Moore
Building the Next Generation of Quantitative Biologists. Pacific Symposium on Biocomputing (2014)
Negacy D. Hailu, K. Bretonnel Cohen, Lawrence E. Hunter
Ontology Translation: A Case Study on Translating the Gene Ontology from English to German. NLDB (2014)
Christopher S. Funk, Lawrence E. Hunter, K. Bretonnel Cohen
Combining Heterogenous Data for Prediction of Disease Related and Pharmacogenes. Pacific Symposium on Biocomputing (2014)
Christopher S. Funk, William A. Baumgartner Jr., Benjamin Garcia, Christophe Roeder, Michael Bada, K. Bretonnel Cohen, Lawrence E. Hunter, Karin Verspoor
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. BMC Bioinform. 15 (2014)
Negacy D. Hailu, Lawrence E. Hunter, K. Bretonnel Cohen
UColorado_SOM: Extraction of Drug-Drug Interactions from Biomedical Text using Knowledge-rich and Knowledge-poor Features. SemEval@NAACL-HLT (2013)
Kevin M. Livingston, Michael Bada, Lawrence E. Hunter, Karin Verspoor
Representing annotation compositionality and provenance for the Semantic Web. J. Biomed. Semant. 4 (2013)
K. Bretonnel Cohen, Lawrence E. Hunter
Chapter 16: Text Mining for Translational Bioinformatics. PLoS Comput. Biol. 9 (4) (2013)
Lawrence E. Hunter
Rocky Mountain Conference on Bioinformatics Celebrates 10 Years. PLoS Comput. Biol. 9 (5) (2013)
Karin Verspoor, Kevin Bretonnel Cohen, Arrick Lanfranchi, Colin Warner, Helen L. Johnson, Christophe Roeder, Jinho D. Choi, Christopher S. Funk, Yuriy Malenkiy, Miriam Eckert, Nianwen Xue, William A. Baumgartner Jr., Michael Bada, Martha Palmer, Lawrence E. Hunter
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinform. 13 (2012)
K. Bretonnel Cohen, Lawrence E. Hunter, Martha Palmer
Assessment of Software Testing and Quality Assurance in Natural Language Processing Applications and a Linguistically Inspired Approach to Improving It. EternalS@ECAI (2012)
Casimir A. Kulikowski, Edward H. Shortliffe, Leanne M. Currie, Peter L. Elkin, Lawrence E. Hunter, Todd R. Johnson, Ira J. Kalet, Leslie A. Lenert, Mark A. Musen, Judy G. Ozbolt, Jack W. Smith, Peter Tarczy-Hornoch, Jeffrey J. Williamson
AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline. J. Am. Medical Informatics Assoc. 19 (6) (2012)
Michael Bada, Miriam Eckert, Donald Evans, Kristin Garcia, Krista Shipley, Dmitry Sitnikov, William A. Baumgartner Jr., K. Bretonnel Cohen, Karin Verspoor, Judith A. Blake, Lawrence E. Hunter
Concept annotation in the CRAFT corpus. BMC Bioinform. 13 (2012)
K. Bretonnel Cohen, Tom Christiansen, Lawrence E. Hunter
MetaMap is a Superior Baseline to a Standard Document Retrieval Engine for the Task of Finding Patient Cohorts in Clinical Free Text. TREC (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)
Andrew D. Fox, William A. Baumgartner Jr., Helen L. Johnson, Lawrence E. Hunter, Donna K. Slonim
Mining Protein-Protein Interactions from GeneRIFs with OpenDMAP. BioLINK@ISMB/ECCB (2008)