Xiuzhen Huang

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 18

Top Topics

Spatial Pyramid

Gene Expression

Pattern Discovery

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Emily Wong, Ryan J. Urbanowicz, Tiffani J. Bright, Nicholas P. Tatonetti, Yi-Wen Hsiao, Xiuzhen Huang, Jason H. Moore, Pei-Chen Peng
Advancing LGBTQ+ inclusion in STEM education and AI research. Patterns 5 (6) (2024)
Jason L. Causey, Keyu Li, Xianghao Chen, Wei Dong, Karl Walker, Jake A. Qualls, Jonathan Stubblefield, Jason H. Moore, Yuanfang Guan, Xiuzhen Huang
Spatial Pyramid Pooling With 3D Convolution Improves Lung Cancer Detection. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (2) (2022)
Joan Peckham, Andy D. Perkins, Tayo Obafemi-Ajayi, Xiuzhen Huang
NBT (no-boundary thinking): needed to attend to ethical implications of data and AI. BCB (2022)
Andy Perkins, Joan Peckham, Tayo Obafemi-Ajayi, Xiuzhen Huang
Team building without boundaries. BCB (2022)
Jinwei Liu, Xiaonan Zhang, Richard A. Aló, Xiuzhen Huang, Long Cheng, Feng Deng
CrossCas: A Novel Cross-Platform Approach for Predicting Cascades in Online Social Networks with Hidden Markov Model. GLOBECOM (2022)
Xiuzhen Huang, Yu Zhang, Xuan Guo
Editorial. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Jason L. Causey, Jonathan Stubblefield, Jake A. Qualls, Jennifer Fowler, Lingrui Cai, Karl Walker, Yuanfang Guan, Xiuzhen Huang
An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Jennifer Fowler, Jonathan Stubblefield, Jason L. Causey, Jake A. Qualls, Wei Dong, Hongmei Jiang, Karl Walker, Yuanfang Guan, Xiuzhen Huang
Identify differentially expressed genes with large background samples. Int. J. Comput. Biol. Drug Des. 14 (6) (2021)
Yuanfang Guan, Xueqing Wang, Hongyang Li, Zhenning Zhang, Xianghao Chen, Omer Siddiqui, Sara Nehring, Xiuzhen Huang
Detecting Asymmetric Patterns and Localizing Cancers on Mammograms. Patterns 1 (7) (2020)
Jason L. Causey, Yuanfang Guan, Wei Dong, Karl Walker, Jake A. Qualls, Fred W. Prior, Xiuzhen Huang
Lung cancer screening with low-dose CT scans using a deep learning approach. CoRR (2019)
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
EBIC: a next-generation evolutionary-based parallel biclustering method. GECCO (Companion) (2018)
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery. Bioinform. 34 (21) (2018)
Patryk Orzechowski, Artur Panszczyk, Xiuzhen Huang, Jason H. Moore
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data. Bioinform. 34 (24) (2018)
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
EBIC: an artificial intelligence-based parallel biclustering algorithm for pattern discovery. CoRR (2018)
Jason L. Causey, Junyu Zhang, Shiqian Ma, Bo Jiang, Jake A. Qualls, David G. Politte, Fred W. Prior, Shuzhong Zhang, Xiuzhen Huang
Highly accurate model for prediction of lung nodule malignancy with CT scans. CoRR (2018)
Jason H. Moore, Steven F. Jennings, Casey S. Greene, Lawrence E. Hunter, Andy D. Perkins, ClarLynda R. Williams-DeVane, Donald C. Wunsch, Zhongming Zhao, Xiuzhen Huang
No-Boundary Thinking in Bioinformatics. PSB (2017)
Suxing Liu, Lucia M. Acosta-Gamboa, Xiuzhen Huang, Argelia Lorence
Novel Low Cost 3D Surface Model Reconstruction System for Plant Phenotyping. J. Imaging 3 (3) (2017)
Juntao Liu, Guojun Li, Zheng Chang, Ting Yu, Bingqiang Liu, Rick McMullen, Pengyin Chen, Xiuzhen Huang
Transcriptome Assembly from RNA-seq Data. PLoS Comput. Biol. 12 (2) (2016)
Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. BioData Min. 8 (2015)
Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Russell L. Malmberg, Liming Cai
Stochastic k-Tree Grammar and Its Application in Biomolecular Structure Modeling. LATA (2014)
Xiuzhen Huang, Barry Bruce, Alison Buchan, Clare Bates Congdon, Carole L. Cramer, Steven F. Jennings, Hongmei Jiang, Zenglu Li, Gail McClure, Rick McMullen, Jason H. Moore, Bindu Nanduri, Joan Peckham, Andy D. Perkins, Shawn W. Polson, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Zhongming Zhao
No-boundary thinking in bioinformatics research. BioData Min. 6 (2013)
Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Liming Cai
Polynomial kernels collapse the W-hierarchy. CoRR (2013)
Shuzhong Zhang, Kun Wang, Cody Ashby, Bilian Chen, Xiuzhen Huang
A Unified Adaptive Co-identification Framework for High-D Expression Data. PRIB (2012)
Cody Ashby, Kun Wang, Carole L. Cramer, Xiuzhen Huang
Study of Protein Structure Alignment Problem in Parameterized Computation. BIOINFORMATICS (2012)
Shuzhong Zhang, Kun Wang, Bilian Chen, Xiuzhen Huang
A New Framework for Co-clustering of Gene Expression Data. PRIB (2011)
Daniel Johnson, Kun Wang, Carole L. Cramer, Xiuzhen Huang
Graph-based approach for gene markers and applications in next-generation sequencing data analysis. BCB (2011)
Liming Cai, Xiuzhen Huang
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results. Algorithmica 57 (2) (2010)
Daniel Johnson, Keat Teoh, Cody Ashby, Elizabeth Hood, Xiuzhen Huang
Analyzing genetic factors involved in recombinant protein expression enhancement. BIBM Workshops (2010)
Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A. Rosamond, Yinglei Song
Parameterized Complexity and Biopolymer Sequence Comparison. Comput. J. 51 (3) (2008)
Cody Ashby, Xiuzhen Huang, Jeff Jenness, Joseph Kerby
A Relational Approach for Pathway Analysis. IMSCCS (2008)
Xiuzhen Huang
Addressing Bio-sequence and Bio-structure Problems. IMSCCS (2008)
Gregory A. Wilkin, Xiuzhen Huang
A practical comparison of two K-Means clustering algorithms. BMC Bioinform. 9 (S-6) (2008)
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
Polynomial time approximation schemes and parameterized complexity. Discret. Appl. Math. 155 (2) (2007)
Xiuzhen Huang, Jing Lai
Parameterized Graph Problems in Computational Biology. IMSCCS (2007)
Gregory A. Wilkin, Xiuzhen Huang
K-Means Clustering Algorithms: Implementation and Comparison. IMSCCS (2007)
Yuan Lin, Jeff Jenness, Xiuzhen Huang
Parameterized Computation of LCS for Two Sequences. BIOCOMP (2006)
Xiuzhen Huang, Jianer Chen
On PTAS for Planar Graph Problems. IFIP TCS (2006)
Xiuzhen Huang, Jing Lai, Steven F. Jennings
Maximum common subgraph: some upper bound and lower bound results. BMC Bioinform. 7 (S-4) (2006)
Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (4) (2006)
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
On the computational hardness based on linear FPT-reductions. J. Comb. Optim. 11 (2) (2006)
Liming Cai, Xiuzhen Huang
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results. IWPEC (2006)
Xiuzhen Huang
Lower Bounds and Parameterized Approach for Longest Common Subsequence. COCOON (2006)
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
Strong computational lower bounds via parameterized complexity. J. Comput. Syst. Sci. 72 (8) (2006)
Xiuzhen Huang, Jing Lai
Maximum Common Subgraph: Upper Bound and Lower Bound Results. IMSCCS (1) (2006)
Xiuzhen Huang
Negative-Weight Cycle Algorithms. FCS (2006)
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
-Hardness Under Linear FPT-Reductions: Structural Properties and Further Applications. COCOON (2005)
Jianer Chen, Benny Chor, Mike Fellows, Xiuzhen Huang, David W. Juedes, Iyad A. Kanj, Ge Xia
Tight lower bounds for certain parameterized NP-hard problems. Inf. Comput. 201 (2) (2005)
Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI (2005)
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
Polynomial Time Approximation Schemes and Parameterized Complexity. MFCS (2004)
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
Linear FPT reductions and computational lower bounds. STOC (2004)
Jianer Chen, Benny Chor, Mike Fellows, Xiuzhen Huang, David W. Juedes, Iyad A. Kanj, Ge Xia
Tight Lower Bounds for Certain Parameterized NP-Hard Problems. Computational Complexity Conference (2004)