Andy D. Perkins

Publication Activity (10 Years)

Years Active: 2006-2022
Publications (10 Years): 5

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Publications

Tayo Obafemi-Ajayi, Andy D. Perkins, Bindu Nanduri, Donald C. Wunsch II, James A. Foster, Joan Peckham
No-boundary thinking: a viable solution to ethical data-driven AI in precision medicine. AI Ethics 2 (4) (2022)
Joan Peckham, Andy D. Perkins, Tayo Obafemi-Ajayi, Xiuzhen Huang
NBT (no-boundary thinking): needed to attend to ethical implications of data and AI. BCB (2022)
Chathurani Ranathunge, Sreepriya Pramod, Sébastien Renaut, Gregory L. Wheeler, Andy D. Perkins, Loren H. Rieseberg, Mark E. Welch
Microsatellites as Agents of Adaptive Change: An RNA-Seq-Based Comparative Study of Transcriptomes from Five Helianthus Species. Symmetry 13 (6) (2021)
Adam Thrash, Federico Hoffmann, Andy D. Perkins
Toward a more holistic method of genome assembly assessment. BMC Bioinform. (4) (2020)
Jason H. Moore, Steven F. Jennings, Casey S. Greene, Lawrence E. Hunter, Andy D. Perkins, ClarLynda R. Williams-DeVane, Donald C. Wunsch, Zhongming Zhao, Xiuzhen Huang
No-Boundary Thinking in Bioinformatics. PSB (2017)
Harun Pirim, Burak Eksioglu, Andy D. Perkins
Clustering high throughput biological data with B-MST, a minimum spanning tree based heuristic. Comput. Biol. Medicine 62 (2015)
Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. BioData Min. 8 (2015)
Jonathan Rice, Kortni Dees, Adam Thrash, Andy D. Perkins
Investigating genome similarity through cross mapping percentage. BCB (2015)
Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Andy D. Perkins, Chaoyang Zhang, Peter Hoyt, Rakesh Kaundal
Proceedings of the 2014 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinform. 15 (S-11) (2014)
Xiuzhen Huang, Barry Bruce, Alison Buchan, Clare Bates Congdon, Carole L. Cramer, Steven F. Jennings, Hongmei Jiang, Zenglu Li, Gail McClure, Rick McMullen, Jason H. Moore, Bindu Nanduri, Joan Peckham, Andy D. Perkins, Shawn W. Polson, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Zhongming Zhao
No-boundary thinking in bioinformatics research. BioData Min. 6 (2013)
Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Rakesh Kaundal, Andy D. Perkins, Edward J. Perkins, Doris M. Kupfer, Gordon K. Springer
Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinform. 14 (S-14) (2013)
Tamer Aldwairi, Bindu Nanduri, Mahalingam Ramkumar, Dilip Gautam, Michael Johnson, Andy D. Perkins
Statistical Methods for Ambiguous Sequence Mappings. BCB (2013)
Harun Pirim, Burak Eksioglu, Andy D. Perkins, Çetin Yüceer
Clustering of high throughput gene expression data. Comput. Oper. Res. 39 (12) (2012)
Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston
A systematic comparison of genome-scale clustering algorithms. BMC Bioinform. 13 (S-10) (2012)
Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston
A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract). ISBRA (2011)
Harun Pirim, Dilip Gautam, Tanmay Bhowmik, Andy D. Perkins, Burak Eksioglu
Performance evaluation of a community structure finding algorithm using modularity and C-rand measures. IJCNN (2010)
Reza Mobini, Bengt A. Andersson, Jonas Erjefält, Mirjana Hahn-Zoric, Michael A. Langston, Andy D. Perkins, Lars Cardell, Mikael Benson
A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation. BMC Syst. Biol. 3 (2009)
Andy D. Perkins, Michael A. Langston
Threshold selection in gene co-expression networks using spectral graph theory techniques. BMC Bioinform. 10 (S-11) (2009)
Brandon M. Malone, Andy D. Perkins, Susan M. Bridges
Integrating phenotype and gene expression data for predicting gene function. BMC Bioinform. 10 (S-11) (2009)
Gary L. Rogers, Andy D. Perkins, Charles A. Phillips, John D. Eblen, Faisal N. Abu-Khzam, Michael A. Langston
Using out-of-core techniques to produce exact solutions to the maximum clique problem on extremely large graphs. AICCSA (2009)
Michael A. Langston, Andy D. Perkins, Arnold M. Saxton, Jon A. Scharff, Brynn H. Voy
Innovative Computational Methods for Transcriptomic Data Analysis: A Case Study in the Use of FPT for Practical Algorithm Design and Implementation. Comput. J. 51 (1) (2008)
Michael A. Langston, Andy D. Perkins, Arnold M. Saxton, Jon A. Scharff, Brynn H. Voy
Innovative computational methods for transcriptomic data analysis. SAC (2006)
Brynn H. Voy, Jon A. Scharff, Andy D. Perkins, Arnold M. Saxton, Bhavesh Borate, Elissa J. Chesler, Lisa K. Branstetter, Michael A. Langston
Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms. PLoS Comput. Biol. 2 (7) (2006)
Ahmed Fadiel, Michael A. Langston, Xinxia Peng, Andy D. Perkins, Hugh S. Taylor, Ozge Tuncalp, D. Vitello, Paul H. Pevsner, Frederick Naftolin
Computational Analysis of Mass Spectrometry Data Using Novel Combinatorial Methods. AICCSA (2006)