Liming Cai

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 23

Top Topics

Conditional Dependencies

Markov Networks

Top Venues

J. Appl. Math. Comput.

Publications

Sixiang Zhang, Aaron J. Yang, Liming Cai
α-HMM: A Graphical Model for RNA Folding. CoRR (2024)
Fereshteh R. Dastjerdi, Liming Cai
Polynomial-time derivation of optimal k-tree topology from Markov networks. CoRR (2024)
Liming Cai, Shuhao Yan, Chuanyun Ouyang, Tianxiang Zhang, Jun Zhu, Li Chen, Hui Liu
Associating Endpoint Accuracy and Similarity of Muscle Synergies. BIOSTEC (1) (2024)
Xixia Ma, Liming Cai
Modeling the impact of directional movement on mosquito population suppress. Appl. Math. Lett. 151 (2024)
Qian Wei, Liming Cai
Bifurcation analysis of an algal blooms dynamical model in trophic interaction. J. Appl. Math. Comput. 70 (4) (2024)
Xiaoguang Li, Xuan Zou, Liming Cai, Yuming Chen
Global dynamics of a vector-borne disease model with direct transmission and differential susceptibility. J. Appl. Math. Comput. 69 (1) (2023)
Chuanyun Ouyang, Liming Cai, Bin Liu, Tianxiang Zhang
An improved wavelet threshold denoising approach for surface electromyography signal. EURASIP J. Adv. Signal Process. 2023 (1) (2023)
Xiankai Cheng, Benkun Bao, Weidong Cui, Shuai Liu, Jun Zhong, Liming Cai, Hongbo Yang
Classification and Analysis of Human Body Movement Characteristics Associated with Acrophobia Induced by Virtual Reality Scenes of Heights. Sensors 23 (12) (2023)
Fei He, Qianshan Yu, Liming Cai
Efficient Summary Reuse for Software Regression Verification. IEEE Trans. Software Eng. 48 (4) (2022)
Gong Cheng, Liming Cai, Chunbo Lang, Xiwen Yao, Jinyong Chen, Lei Guo, Junwei Han
SPNet: Siamese-Prototype Network for Few-Shot Remote Sensing Image Scene Classification. IEEE Trans. Geosci. Remote. Sens. 60 (2022)
Jun Zhong, Yongfeng Liu, Xiankai Cheng, Liming Cai, Weidong Cui, Dong Hai
Gated Recurrent Unit Network for Psychological Stress Classification Using Electrocardiograms from Wearable Devices. Sensors 22 (22) (2022)
Zhisen Wang, Juzhong Zhang, Yuyi Chu, Qing Zha, Liming Cai, Tingfeng Ye, Yuanyuan Qin, Hongli Dong, Hongbo Yang
Development of A Low-Inertia 5-DOF Hybrid Manipulator for Moxibustion. ICAR (2021)
Mohammad Mohebbi, Liang Ding, Russell L. Malmberg, Liming Cai
Human MicroRNA Target Prediction via Multi-Hypotheses Learning. J. Comput. Biol. 28 (2) (2021)
Zahra Jandaghi, Liming Cai
On Graph Learning with Neural Networks. LOD (2) (2020)
Liming Cai, Gaoxu Fan, Chayu Yang, Jin Wang
Modeling and analyzing cholera transmission dynamics with vaccination age. J. Frankl. Inst. 357 (12) (2020)
Yunlu Wang, Duo Li, Menghan Hu, Liming Cai
Non-local Recoloring Algorithm for Color Vision Deficiencies with Naturalness and Detail Preserving. IFTC (2019)
Mohammad Mohebbi, Liang Ding, Russell L. Malmberg, Liming Cai
A Multi-hypothesis Learning Algorithm for Human and Mouse miRNA Target Prediction. ICCABS (2019)
Liang Ding, Di Chang, Russell L. Malmberg, Aaron Martínez, David Robinson, Matthew Wicker, Hongfei Yan, Liming Cai
Efficient Learning of Optimal Markov Network Topology with k-Tree Modeling. CoRR (2018)
Mohammad Mohebbi, Liang Ding, Russell L. Malmberg, Cory Momany, Khaled Rasheed, Liming Cai
Accurate prediction of human miRNA targets via graph modeling of the miRNA-target duplex. J. Bioinform. Comput. Biol. 16 (4) (2018)
Fei He, Qianshan Yu, Liming Cai
When Regression Verification Meets CEGAR. CoRR (2018)
Ying Sun, Willie L. Rogers, Katrien M. Devos, Liming Cai, Russell L. Malmberg
Genome-wide identification and evolutionary analysis of long non-coding RNAs in cereals. ICCABS (2016)
Yinglei Song, Junfeng Qu, Ying Xu, Liming Cai
A New Graph Theoretic Approach for Protein Threading. Fundam. Informaticae 145 (2) (2016)
Mohammad Mohebbi, Liang Ding, Russell L. Malmberg, Cory Momany, Khaled Rasheed, Liming Cai
Accurate prediction of human miRNA targets via graph modeling of miRNA-target duplex. ICCABS (2016)
Liang Ding, Xingran Xue, Sal LaMarca, Mohammad Mohebbi, Abdul Samad, Russell L. Malmberg, Liming Cai
-tree model. Bioinform. 31 (16) (2015)
Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. BioData Min. 8 (2015)
Liming Cai, Shuli Guo, Shuping Wang
Analysis of an extended HIV/AIDS epidemic model with treatment. Appl. Math. Comput. 236 (2014)
Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Russell L. Malmberg, Liming Cai
Stochastic k-Tree Grammar and Its Application in Biomolecular Structure Modeling. LATA (2014)
Liming Cai, Shangbing Ai, Jia Li
Dynamics of Mosquitoes Populations with Different Strategies for Releasing Sterile Mosquitoes. SIAM J. Appl. Math. 74 (6) (2014)
Liang Ding, Xingran Xue, Sal LaMarca, Mohammad Mohebbi, Abdul Samad, Russell L. Malmberg, Liming Cai
-Tree Model. CMSR@ECCB (2014)
Liang Ding, Joseph Robertson, Russell L. Malmberg, Liming Cai
Protein Closed Loop Prediction from Contact Probabilities. ISBRA (2013)
Anuj Srivastava, Xiaoyu Zhang, Sal LaMarca, Liming Cai, Russell L. Malmberg
. ISBRA (2013)
Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Liming Cai
Polynomial kernels collapse the W-hierarchy. CoRR (2013)
Dong Zhang, Xingran Xue, Russell L. Malmberg, Liming Cai
TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes. Bioinform. 28 (20) (2012)
Yingfeng Wang, Amir Manzour, Pooya Shareghi, Timothy I. Shaw, Ying-Wai Li, Russell L. Malmberg, Liming Cai
Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds. BMC Bioinform. 13 (S-5) (2012)
Leilei Guo, Dong Zhang, Yingfeng Wang, Russell L. Malmberg, Michael J. McEachern, Liming Cai
TRFolder: computational prediction of novel telomerase RNA structures in yeast genomes. Int. J. Bioinform. Res. Appl. 7 (1) (2011)
Timothy I. Shaw, Amir Manzour, Yingfeng Wang, Russell L. Malmberg, Liming Cai
Analyzing Modular RNA Structure reveals Low Global Structural Entropy in microRNA Sequence. J. Bioinform. Comput. Biol. 9 (2) (2011)
Pooya Shareghi, Yingfeng Wang, Russell L. Malmberg, Liming Cai
Simultaneous Prediction of RNA Secondary Structure and Helix Coaxial Stacking. BIBM (2011)
Yingfeng Wang, Amir Manzour, Pooya Shareghi, Timothy I. Shaw, Ying-Wai Li, Russell L. Malmberg, Liming Cai
Stable stem enabled shannon entropies distinguish non-coding RNAs from random backgrounds. ICCABS (2011)
Russell L. Malmberg, Timothy I. Shaw, Liming Cai
RNApasta: a tool for analysis of RNA structural alignments. Int. J. Bioinform. Res. Appl. 6 (6) (2010)
Liming Cai, Xiuzhen Huang
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results. Algorithmica 57 (2) (2010)
Yingfeng Wang, Zhibin Huang, Yong Wu, Russell L. Malmberg, Liming Cai
RNATOPS-W: a web server for RNA structure searches of genomes. Bioinform. 25 (8) (2009)
Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A. Rosamond, Yinglei Song
Parameterized Complexity and Biopolymer Sequence Comparison. Comput. J. 51 (3) (2008)
Zhibin Huang, Yong Wu, Joseph Robertson, Liang Feng, Russell L. Malmberg, Liming Cai
Fast and accurate search for non-coding RNA pseudoknot structures in genomes. Bioinform. 24 (20) (2008)
Dongsheng Che, Jizhen Zhao, Liming Cai, Ying Xu
Operon Prediction in Microbial Genomes Using Decision Tree Approach. CIBCB (2007)
Jizhen Zhao, Dongsheng Che, Liming Cai
Comparative Pathway Annotation with Protein-DNA Interaction and Operon Information via Graph Tree Decomposition. Pacific Symposium on Biocomputing (2007)
Liming Cai, Michael R. Fellows, David W. Juedes, Frances A. Rosamond
The Complexity of Polynomial-Time Approximation. Theory Comput. Syst. 41 (3) (2007)
Jizhen Zhao, Dongsheng Che, Liming Cai
Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information. ISBRA (2007)
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Congzhou He, Liming Cai
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots. Int. J. Bioinform. Res. Appl. 2 (3) (2006)
Jizhen Zhao, Russell L. Malmberg, Liming Cai
RNA Folding Including Pseudoknots Via Graph Tree Decomposition. WABI (2006)
Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai
Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Pacific Symposium on Biocomputing (2006)
Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (4) (2006)
Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai
Peptide sequence tag-based blind identification of post-translational modifications with point process model. ISMB (Supplement of Bioinformatics) (2006)
Liming Cai, Xiuzhen Huang
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results. IWPEC (2006)
Jizhen Zhao, Liming Cai, Russell L. Malmberg
Learning the Parameters of Stochastic Grammar Models for RNA Structures with Pseudoknots. GrC (2006)
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai
Phylogenetic Network Inferences Through Efficient Haplotyping. WABI (2006)
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fangfang Pan, Liming Cai
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes. CSB (2005)
Dongsheng Che, Shane T. Jensen, Liming Cai, Jun S. Liu
BEST: Binding-site Estimation Suite of Tools. Bioinform. 21 (12) (2005)
Yinglei Song, Jizhen Zhao, Chunmei Liu, Kan Liu, Russell L. Malmberg, Liming Cai
RNA Structural Homology Search with a Succinct Stochastic Grammar Model. J. Comput. Sci. Technol. 20 (4) (2005)
Ying Xu, Liming Cai, Zhiping Weng
Preface. J. Comput. Sci. Technol. 20 (4) (2005)
Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai
Profiling and Searching for RNA Pseudoknot Structures in Genomes. Trans. Comp. Sys. Biology 2 (2005)
Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai
Profiling and Searching for RNA Pseudoknot Structures in Genomes. International Conference on Computational Science (2) (2005)
Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI (2005)
Liming Cai, Russell L. Malmberg, Yunzhou Wu
Stochastic modeling of RNA pseudoknotted structures: a grammatical approach. ISMB (Supplement of Bioinformatics) (2003)
Liming Cai, David W. Juedes
On the existence of subexponential parameterized algorithms. J. Comput. Syst. Sci. 67 (4) (2003)
Liming Cai, David W. Juedes, Iyad A. Kanj
The inapproximability of non-NP-hard optimization problems. Theor. Comput. Sci. 289 (1) (2002)
Liming Cai, David W. Juedes
Subexponential Parameterized Algorithms Collapse the W-Hierarchy. ICALP (2001)
Liming Cai, David Juedes, Evgueni Liakhovitch
Evolutionary computation techniques for multiple sequence alignment. CEC (2000)
Liming Cai, David W. Juedes, Iyad A. Kanj
The Inapproximability of Non NP-hard Optimization Problems. ISAAC (1998)
Liming Cai, Jianer Chen, Johan Håstad
Circuit Bottom Fan-In and Computational Power. SIAM J. Comput. 27 (2) (1998)
Liming Cai, Jianer Chen, Rodney G. Downey, Michael R. Fellows
On the parameterized complexity of short computation and factorization. Arch. Math. Log. 36 (4-5) (1997)
Liming Cai, Jianer Chen
On the Amount of Nondeterminism and the Power of Verifying. SIAM J. Comput. 26 (3) (1997)
Karl R. Abrahamson, Liming Cai, Steve Gordon
A Grammar Characterization of Logarithmic-Space Computation. New Trends in Formal Languages (1997)
Liming Cai, Jianer Chen
On Fixed-Parameter Tractability and Approximability of NP Optimization Problems. J. Comput. Syst. Sci. 54 (3) (1997)
Liming Cai, Jianer Chen, Johan Håstad
Circuit Bottom Fan-in and Computational Power. Computational Complexity Conference (1997)
Liming Cai, Jianer Chen, Rodney G. Downey, Michael R. Fellows
Advice Classes of Parameterized Tractability. Ann. Pure Appl. Log. 84 (1) (1997)
Liming Cai
The Computational Complexity of Linear PCGSs. Comput. Artif. Intell. 15 (2-3) (1996)
Liming Cai, Jianer Chen, Rodney G. Downey, Michael R. Fellows
On the Structure of Parameterized Problems in NP. Inf. Comput. 123 (1) (1995)
Liming Cai, Jianer Chen
On log-Time Alternating Turing Machines of Alternation Depth k (Extended Abstract). COCOON (1995)
Liming Cai, Jianer Chen
On Input Read-Modes of Alternating Turing Machines. Theor. Comput. Sci. 148 (1) (1995)
Liming Cai
The Computational Complexity of PCGS with Regular Components. Developments in Language Theory (1995)
Liming Cai, Jianer Chen, Rodney G. Downey, Michael R. Fellows
On the Structure of Parameterized Problems in NP (Extended Abstract). STACS (1994)
Liming Cai, Jianer Chen
On the Amount of Nondeterminism and the Power of Verifying (Extended Abstract). MFCS (1993)
Liming Cai, Jianer Chen
-Hard Optimization Problems. ISTCS (1993)