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Trans. Comp. Sys. Biology
2005
2007
2010
2012
2005
2012
Keyphrases
Publications
volume 14, 2012
Rodrick Wallace
Metabolic Constraints on the Evolution of Genetic Codes: Did Multiple Preaerobic' Ecosystem Transitions Entrain Richer Dialects via Serial Endosymbiosis?
Trans. Comp. Sys. Biology
14 (2012)
Ezio Bartocci
,
Pietro Liò
,
Emanuela Merelli
,
Nicola Paoletti
Multiple Verification in Complex Biological Systems: The Bone Remodelling Case Study.
Trans. Comp. Sys. Biology
14 (2012)
Oana Andrei
,
Muffy Calder
Trend-Based Analysis of a Population Model of the AKAP Scaffold Protein.
Trans. Comp. Sys. Biology
14 (2012)
Qixia Yuan
,
Panuwat Trairatphisan
,
Jun Pang
,
Sjouke Mauw
,
Monique Wiesinger
,
Thomas Sauter
Probabilistic Model Checking of the PDGF Signaling Pathway.
Trans. Comp. Sys. Biology
14 (2012)
Andrzej Mizera
,
Eugen Czeizler
,
Ion Petre
Self-assembly Models of Variable Resolution.
Trans. Comp. Sys. Biology
14 (2012)
Cristian Versari
,
Gianluigi Zavattaro
Complex Functional Rates in Rule-Based Languages for Biochemistry.
Trans. Comp. Sys. Biology
14 (2012)
Alessio Angius
,
András Horváth
,
Verena Wolf
Quasi Product Form Approximation for Markov Models of Reaction Networks.
Trans. Comp. Sys. Biology
14 (2012)
Andrzej Ehrenfeucht
,
Jetty Kleijn
,
Maciej Koutny
,
Grzegorz Rozenberg
Minimal Reaction Systems.
Trans. Comp. Sys. Biology
14 (2012)
Lubos Brim
,
Jana Fabriková
,
Sven Drazan
,
David Safránek
On Approximative Reachability Analysis of Biochemical Dynamical Systems.
Trans. Comp. Sys. Biology
14 (2012)
volume 13, 2011
Rhys Goldstein
,
Gabriel A. Wainer
Impulse-Based Dynamic Simulation of Deformable Biological Structures.
Trans. Comp. Sys. Biology
13 (2011)
Ovidiu Radulescu
,
Anne Siegel
,
Elisabeth Pécou
,
Clément Chatelain
,
Sandrine Lagarrigue
Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities.
Trans. Comp. Sys. Biology
13 (2011)
Roberto Barbuti
,
Giulio Caravagna
,
Andrea Maggiolo-Schettini
,
Paolo Milazzo
Delay Stochastic Simulation of Biological Systems: A Purely Delayed Approach.
Trans. Comp. Sys. Biology
13 (2011)
Mario Coppo
,
Ferruccio Damiani
,
Maurizio Drocco
,
Elena Grassi
,
Mike Guether
,
Angelo Troina
Modelling Ammonium Transporters in Arbuscular Mycorrhiza Symbiosis.
Trans. Comp. Sys. Biology
13 (2011)
Antti Häkkinen
,
Fred G. Biddle
,
Olli-Pekka Smolander
,
Olli Yli-Harja
,
Andre S. Ribeiro
Evolutionary Dynamics of a Population of Cells with a Toxin Suppressor Gene.
Trans. Comp. Sys. Biology
13 (2011)
Loïc Paulevé
,
Morgan Magnin
,
Olivier F. Roux
Refining Dynamics of Gene Regulatory Networks in a Stochastic p-Calculus Framework.
Trans. Comp. Sys. Biology
13 (2011)
Laurence Loewe
,
Maria Luisa Guerriero
,
Steven Watterson
,
Stuart L. Moodie
,
Peter Ghazal
,
Jane Hillston
Translation from the Quantified Implicit Process Flow Abstraction in SBGN-PD Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway.
Trans. Comp. Sys. Biology
13 (2011)
Rodrick Wallace
,
Deborah Wallace
Cultural Epigenetics: On the Heritability of Complex Diseases.
Trans. Comp. Sys. Biology
13 (2011)
volume 12, 2010
Antje Beyer
,
Peter Thomason
,
Xinzhong Li
,
James Scott
,
Jasmin Fisher
Mechanistic Insights into Metabolic Disturbance during Type-2 Diabetes and Obesity Using Qualitative Networks.
Trans. Comp. Sys. Biology
12 (2010)
Céline Kuttler
,
Cédric Lhoussaine
,
Mirabelle Nebut
Rule-Based Modeling of Transcriptional Attenuation at the Tryptophan Operon.
Trans. Comp. Sys. Biology
12 (2010)
Roberto Larcher
,
Corrado Priami
,
Alessandro Romanel
Modelling Self-assembly in BlenX.
Trans. Comp. Sys. Biology
12 (2010)
Mathias John
,
Cédric Lhoussaine
,
Joachim Niehren
,
Adelinde M. Uhrmacher
The Attributed Pi-Calculus with Priorities.
Trans. Comp. Sys. Biology
12 (2010)
Rainer Breitling
,
Robin Donaldson
,
David R. Gilbert
,
Monika Heiner
Biomodel Engineering - From Structure to Behavior.
Trans. Comp. Sys. Biology
12 (2010)
Federica Ciocchetta
,
Andrea Degasperi
,
John K. Heath
,
Jane Hillston
B Pathway in Bio-PEPA.
Trans. Comp. Sys. Biology
12 (2010)
Michael Pedersen
,
Gordon D. Plotkin
A Language for Biochemical Systems: Design and Formal Specification.
Trans. Comp. Sys. Biology
12 (2010)
volume 11, 2009
John Jack
,
Andrei Paun
Discrete Modeling of Biochemical Signaling with Memory Enhancement.
Trans. Comp. Sys. Biology
11 (2009)
Graziano Chesi
Computing Equilibrium Points of Genetic Regulatory Networks.
Trans. Comp. Sys. Biology
11 (2009)
Monika Heiner
,
Sebastian Lehrack
,
David R. Gilbert
,
Wolfgang Marwan
Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments.
Trans. Comp. Sys. Biology
11 (2009)
Rodrick Wallace
,
Deborah Wallace
Code, Context, and Epigenetic Catalysis in Gene Expression.
Trans. Comp. Sys. Biology
11 (2009)
Muffy Calder
,
Jane Hillston
Process Algebra Modelling Styles for Biomolecular Processes.
Trans. Comp. Sys. Biology
11 (2009)
Dragan Bosnacki
,
Tessa E. Pronk
,
Erik P. de Vink
Modelling and Analysis of Ribosome Kinetics and aa-tRNA Competition.
Trans. Comp. Sys. Biology
11 (2009)
Federica Ciocchetta
Bio-PEPA with Events.
Trans. Comp. Sys. Biology
11 (2009)
Vincent Danos
,
Jérôme Feret
,
Walter Fontana
,
Russell Harmer
,
Jean Krivine
Rule-Based Modelling and Model Perturbation.
Trans. Comp. Sys. Biology
11 (2009)
Jürgen Dassow
,
Victor Mitrana
Accepting Networks of Non-inserting Evolutionary Processors.
Trans. Comp. Sys. Biology
11 (2009)
Maria Pamela C. David
,
Johnrob Y. Bantang
,
Eduardo R. Mendoza
A Projective Brane Calculus with Activate, Bud and Mate as Primitive Actions.
Trans. Comp. Sys. Biology
11 (2009)
Bogdan Aman
,
Gabriel Ciobanu
Simple, Enhanced and Mutual Mobile Membranes.
Trans. Comp. Sys. Biology
11 (2009)
Luca Bortolussi
,
Alberto Policriti
Dynamical Systems and Stochastic Programming: To Ordinary Differential Equations and Back.
Trans. Comp. Sys. Biology
11 (2009)
Maria Luisa Guerriero
Qualitative and Quantitative Analysis of a Bio-PEPA Model of the Gp130/JAK/STAT Signalling Pathway.
Trans. Comp. Sys. Biology
11 (2009)
volume 10, 2008
Agostino Forestiero
,
Carlo Mastroianni
,
Giuseppe Papuzzo
,
Giandomenico Spezzano
Towards a Self-structured Grid: An Ant-Inspired P2P Algorithm.
Trans. Comp. Sys. Biology
10 (2008)
Lili Wang
,
Alioune Ngom
,
Robin Gras
,
Luis Rueda
An Evolutionary Approach to the Non-unique Oligonucleotide Probe Selection Problem.
Trans. Comp. Sys. Biology
10 (2008)
Nicola Segata
,
Enrico Blanzieri
-Calculus Modelling of Multisite Phosphorylation Based Signaling: The PHO Pathway in Saccharomyces Cerevisiae.
Trans. Comp. Sys. Biology
10 (2008)
Elena Dubrova
,
Maxim Teslenko
,
Hannu Tenhunen
A Computational Scheme Based on Random Boolean Networks.
Trans. Comp. Sys. Biology
10 (2008)
Luis Rueda
,
Ataul Bari
,
Alioune Ngom
Clustering Time-Series Gene Expression Data with Unequal Time Intervals.
Trans. Comp. Sys. Biology
10 (2008)
Baris Atakan
,
Özgür B. Akan
On Channel Capacity and Error Compensation in Molecular Communication.
Trans. Comp. Sys. Biology
10 (2008)
Thomas Meyer
,
Daniel Schreckling
,
Christian F. Tschudin
,
Lidia Yamamoto
Robustness to Code and Data Deletion in Autocatalytic Quines.
Trans. Comp. Sys. Biology
10 (2008)
Scott F. Smith
,
Kay C. Wiese
Integrating Thermodynamic and Observed-Frequency Data for Non-coding RNA Gene Search.
Trans. Comp. Sys. Biology
10 (2008)
volume 9, 2008
Rodrick Wallace
,
Deborah Wallace
Punctuated Equilibrium in Statistical Models of Generalized Coevolutionary Resilience: How Sudden Ecosystem Transitions Can Entrain Both Phenotype Expression and Darwinian Selection.
Trans. Comp. Sys. Biology
9 (2008)
Paras Chopra
,
Andreas Bender
Requires BglF Conformational Change for Sugar Transport.
Trans. Comp. Sys. Biology
9 (2008)
Roberto Barbuti
,
Andrea Maggiolo-Schettini
,
Paolo Milazzo
,
Paolo Tiberi
,
Angelo Troina
Stochastic Calculus of Looping Sequences for the Modelling and Simulation of Cellular Pathways.
Trans. Comp. Sys. Biology
9 (2008)
Federica Ciocchetta
The BlenX Language with Biological Transactions.
Trans. Comp. Sys. Biology
9 (2008)
volume 8, 2007
Corrado Priami
Computational Thinking in Biology.
Trans. Comp. Sys. Biology
8 (2007)