Andrzej Mizera

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 20

Top Topics

Boolean Networks

Parameter Estimation

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Andrzej Mizera, Jakub Zarzycki
Deep Reinforcement Learning for Controlled Traversing of the Attractor Landscape of Boolean Models in the Context of Cellular Reprogramming. CoRR (2024)
Ross Horne, Sjouke Mauw, Andrzej Mizera, André Stemper, Jan Thoemel
Anomaly Detection Using Deep Learning Respecting the Resources on Board a CubeSat. J. Aerosp. Inf. Syst. 20 (12) (2023)
Soumya Paul, Cui Su, Jun Pang, Andrzej Mizera
An Efficient Approach Towards the Source-Target Control of Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (6) (2020)
Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
Taming Asynchrony for Attractor Detection in Large Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (1) (2019)
Qixia Yuan, Andrzej Mizera, Jun Pang, Hongyang Qu
A new decomposition-based method for detecting attractors in synchronous Boolean networks. Sci. Comput. Program. 180 (2019)
Andrzej Mizera, Jun Pang, Qixia Yuan
GPU-accelerated steady-state computation of large probabilistic Boolean networks. Formal Aspects Comput. 31 (1) (2019)
Andrzej Mizera, Jun Pang, Cui Su, Qixia Yuan
ASSA-PBN: A Toolbox for Probabilistic Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (4) (2018)
Andrzej Mizera, Jun Pang, Qixia Yuan
Reviving the Two-State Markov Chain Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Soumya Paul, Cui Su, Jun Pang, Andrzej Mizera
A Decomposition-based Approach towards the Control of Boolean Networks (Technical Report). CoRR (2018)
Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
ASSA-PBN 3.0: Analysing Context-Sensitive Probabilistic Boolean Networks. CMSB (2018)
Soumya Paul, Cui Su, Jun Pang, Andrzej Mizera
A Decomposition-based Approach towards the Control of Boolean Networks. BCB (2018)
Sepinoud Azimi, Charmi Panchal, Andrzej Mizera, Ion Petre
Multi-Stability, Limit Cycles, and Period-Doubling Bifurcation with Reaction Systems. Int. J. Found. Comput. Sci. 28 (8) (2017)
Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
Taming Asynchrony for Attractor Detection in Large Boolean Networks (Technical Report). CoRR (2017)
Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
A New Decomposition Method for Attractor Detection in Large Synchronous Boolean Networks. SETTA (2017)
Andrzej Mizera, Jun Pang, Qixia Yuan
Fast Simulation of Probabilistic Boolean Networks. CMSB (2016)
Andrzej Mizera, Jun Pang, Qixia Yuan
ASSA-PBN 2.0: A Software Tool for Probabilistic Boolean Networks. CMSB (2016)
Andrzej Mizera, Jun Pang, Qixia Yuan
GPU-Accelerated Steady-State Computation of Large Probabilistic Boolean Networks. SETTA (2016)
Qixia Yuan, Hongyang Qu, Jun Pang, Andrzej Mizera
Improving BDD-based attractor detection for synchronous Boolean networks. Sci. China Inf. Sci. 59 (8) (2016)
Andrzej Mizera, Jun Pang, Qixia Yuan
Parallel approximate steady-state analysis of large probabilistic Boolean networks. SAC (2016)
Andrzej Mizera, Jun Pang, Qixia Yuan
Fast Simulation of Probabilistic Boolean Networks (Technical Report). CoRR (2016)
Hongyang Qu, Qixia Yuan, Jun Pang, Andrzej Mizera
Improving BDD-based Attractor Detection for Synchronous Boolean Networks. Internetware (2015)
Xihui Chen, Andrzej Mizera, Jun Pang
Activity tracking: A new attack on location privacy. CNS (2015)
Andrzej Mizera, Jun Pang, Qixia Yuan
ASSA-PBN: An Approximate Steady-State Analyser of Probabilistic Boolean Networks. ATVA (2015)
Andrzej Mizera, Jun Pang, Qixia Yuan
Reviving the Two-state Markov Chain Approach (Technical Report). CoRR (2015)
Andrzej Mizera, Jun Pang, Qixia Yuan
Parallel Approximate Steady-state Analysis of Large Probabilistic Boolean Networks (Technical Report). CoRR (2015)
Andrzej Mizera, Jun Pang, Qixia Yuan
Model-Checking Based Approaches to Parameter Estimation of Gene Regulatory Networks. ICECCS (2014)
Andrzej Mizera, Eugen Czeizler, Ion Petre
Self-assembly Models of Variable Resolution. Trans. Comp. Sys. Biology 14 (2012)
Elena Czeizler, Andrzej Mizera, Ion Petre
A Boolean Approach for Disentangling the Roles of Submodules to the Global Properties of a Biomodel. Fundam. Informaticae 116 (1-4) (2012)
Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-Johan Back, John E. Eriksson, Ion Petre
Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentin. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (3) (2012)
Ion Petre, Andrzej Mizera, Claire L. Hyder, Annika Meinander, Andrey Mikhailov, Richard I. Morimoto, Lea Sistonen, John E. Eriksson, Ralph-Johan Back
A simple mass-action model for the eukaryotic heat shock response and its mathematical validation. Nat. Comput. 10 (1) (2011)
Ion Petre, Andrzej Mizera, Claire L. Hyder, Andrey Mikhailov, John E. Eriksson, Lea Sistonen, Ralph-Johan Back
A New Mathematical Model for the Heat Shock Response. Algorithmic Bioprocesses (2009)
Ion Petre, Andrzej Mizera, Ralph-Johan Back
Computational Heuristics for Simplifying a Biological Model. CiE (2009)
Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek Wilczynski, Jerzy Tiuryn
Applying dynamic Bayesian networks to perturbed gene expression data. BMC Bioinform. 7 (2006)