Emanuela Merelli

ORCID

Publication Activity (10 Years)

Years Active: 1987-2024
Publications (10 Years): 26

Top Venues

Publications

Daniele Marchei, Emanuela Merelli, Andrew R. Francis
Factorizing the Brauer monoid in polynomial time. CoRR (2024)
Michela Quadrini, Luca Tesei, Emanuela Merelli
Automatic generation of pseudoknotted RNAs taxonomy. BMC Bioinform. (6) (2022)
Daniele Marchei, Emanuela Merelli
RNA secondary structure factorization in prime tangles. BMC Bioinform. (6) (2022)
Stefano Maestri, Emanuela Merelli
Automaton of molecular perceptions in biochemical reactions. CoRR (2021)
Michela Quadrini, Luca Tesei, Emanuela Merelli
ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots. Bioinform. 36 (11) (2020)
Alessio Mancini, Leonardo Vito, Elisa Marcelli, Marco Piangerelli, Renato De Leone, Sandra Pucciarelli, Emanuela Merelli
Machine learning models predicting multidrug resistant urinary tract infections using "DsaaS". BMC Bioinform. (10) (2020)
Michela Quadrini, Emanuela Merelli, Riccardo Piergallini
Loop Grammars to Identify RNA Structural Patterns. BIOINFORMATICS (2019)
Marco Piangerelli, Luca Tesei, Emanuela Merelli
A Persistent Entropy Automaton for the Dow Jones Stock Market. FSEN (2019)
Matteo Rucco, Luca Tesei, Emanuela Merelli
Topological Run-time Monitoring for Complex Systems. CoRR (2019)
Emanuela Merelli, Anita Wasilewska
Topological Interpretation of Interactive Computation. CoRR (2019)
Michela Quadrini, Luca Tesei, Emanuela Merelli
An algebraic language for RNA pseudoknots comparison. BMC Bioinform. (4) (2019)
Stefano Maestri, Emanuela Merelli
Algebraic Characterisation of Non-coding RNA. CIBB (2019)
Michela Quadrini, Emanuela Merelli, Riccardo Piergallini
Label Core for Understanding RNA Structure. CIBB (2019)
Emanuela Merelli, Anita Wasilewska
Topological Interpretation of Interactive Computation. From Reactive Systems to Cyber-Physical Systems (2019)
Lorenzo Bettini, Emanuela Merelli, Francesco Tiezzi
X-Klaim Is Back. Models, Languages, and Tools for Concurrent and Distributed Programming (2019)
Michela Quadrini, Emanuela Merelli
Loop-loop Interaction Metrics on RNA Secondary Structures with Pseudoknots. BIOINFORMATICS (2018)
Jeffrey H. Johnson, Luca Tesei, Marco Piangerelli, Emanuela Merelli, Riccardo Paci, Nenad Stojanovic, Paulo Leitão, José Barbosa, Marco Amador
Big Data: Business, Technology, Education, and Science: Big Data (Ubiquity symposium). Ubiquity 2018 (July) (2018)
Matteo Rucco, Rocío González-Díaz, Maria Jose Jimenez, Nieves Atienza, Cristina Cristalli, Enrico Concettoni, Andrea Ferrante, Emanuela Merelli
A new topological entropy-based approach for measuring similarities among piecewise linear functions. Signal Process. 134 (2017)
Michela Quadrini, Luca Tesei, Emanuela Merelli
An algebraic representation for tree alignment of RNA pseudoknotted structures. PeerJ Prepr. 5 (2017)
Diletta Cacciagrano, Flavio Corradini, Emanuela Merelli, Luca Tesei
Uniformity in Multiscale Models: From Complex Automata to BioShape. J. Cell. Autom. 12 (5) (2017)
Michela Quadrini, Rosario Culmone, Emanuela Merelli
Topological Classification of RNA Structures via Intersection Graph. TPNC (2017)
Emanuela Merelli, Matteo Rucco, Luca Tesei, Marco Piangerelli, Adane Letta Mamuye, Michela Quadrini
Survey of TOPDRIM Applications of Topological Data Analysis. KDWeb (2016)
Adane Letta Mamuye, Emanuela Merelli, Luca Tesei
A Graph Grammar for Modelling RNA Folding. GaM@ETAPS (2016)
Emanuela Merelli, Marco Piangerelli, Matteo Rucco, Daniele Toller
A topological approach for multivariate time series characterization: the epileptic brain. EAI Endorsed Trans. Self Adapt. Syst. 2 (7) (2016)
Emanuela Merelli, Nicola Paoletti, Luca Tesei
Adaptability checking in complex systems. Sci. Comput. Program. (2016)
Marco Piangerelli, Matteo Rucco, Emanuela Merelli
Topological classifier for detecting the emergence of epileptic seizures. CoRR (2016)
Paola Giannini, Emanuela Merelli, Angelo Troina
Interactions between Computer Science and Biology. Theor. Comput. Sci. 587 (2015)
Matteo Rucco, Enrico Concettoni, Cristina Cristalli, Andrea Ferrante, Emanuela Merelli
Topological classification of small DC motors. RTSI (2015)
Matteo Rucco, Rocío González-Díaz, María José Jiménez, Nieves Atienza, Cristina Cristalli, Enrico Concettoni, Andrea Ferrante, Emanuela Merelli
A new topological entropy-based approach for measuring similarities among piecewise linear functions. CoRR (2015)
Emanuela Merelli, Marco Pettini, Mario Rasetti
Topology driven modeling: the IS metaphor. Nat. Comput. 14 (3) (2015)
Emanuela Merelli, Ion Petre
From Computer Science to Biology and Back. Theor. Comput. Sci. 608 (2015)
Adane Letta Mamuye, Emanuela Merelli, Luca Tesei
Towards a Shape Language for Interpreting RNA Folding. BICT (2015)
Emanuela Merelli, Matteo Rucco, Peter M. A. Sloot, Luca Tesei
Topological characterization of S[B] systems: From data to models of complexity. CoRR (2015)
Emanuela Merelli, Matteo Rucco, Peter M. A. Sloot, Luca Tesei
Topological Characterization of Complex Systems: Using Persistent Entropy. Entropy 17 (10) (2015)
Emanuela Merelli, Marco Piangerelli, Matteo Rucco, Daniele Toller
A topological approach for multivariate time series characterization: the epileptic brain. BICT (2015)
Chiara Cini, Luca Tesei, Giuseppe Scarcella, Cesar Augusto Nieto Coria, Emanuela Merelli
Probabilistic Modelling and Analysis of a Fish Population. SEFM Workshops (2015)
Matteo Rucco, Filippo Castiglione, Emanuela Merelli, Marco Pettini
Characterisation of the Idiotypic Immune Network Through Persistent Entropy. ECCS (2014)
Matteo Rucco, David M. S. Rodrigues, Emanuela Merelli, Jeffrey H. Johnson, Lorenzo Falsetti, Cinzia Nitti, Aldo Salvi
Neural Hypernetwork Approach for Pulmonary Embolism diagnosis. CoRR (2014)
Cesar Augusto Nieto Coria, Luca Tesei, Giuseppe Scarcella, Tommaso Russo, Emanuela Merelli
Sea-Scale Agent-Based Simulator of Solea solea in the Adriatic Sea. SEFM Workshops (2014)
Emanuela Merelli, Nicola Paoletti, Luca Tesei
Adaptability Checking in Multi-Level Complex Systems. CoRR (2014)
Emanuela Merelli, Marco Piangerelli
RNN-based Model for Self-adaptive Systems - The Emergence of Epilepsy in the Human Brain. IJCCI (NCTA) (2014)
Rosario Culmone, M. Falcioni, Paolo Giuliodori, Emanuela Merelli, A. Orru, M. Quadrini, P. Ciampolini, Ferdinando Grossi, Guido Matrella
AAL domain ontology for event-based human activity recognition. MESA (2014)
Jacopo Binchi, Emanuela Merelli, Matteo Rucco, Giovanni Petri, Francesco Vaccarino
jHoles: A Tool for Understanding Biological Complex Networks via Clique Weight Rank Persistent Homology. Electron. Notes Theor. Comput. Sci. 306 (2014)
Emanuela Merelli, Ion Petre
Preface. Electron. Notes Theor. Comput. Sci. 306 (2014)
Lorena Rossi, Alberto Belli, Adelmo De Santis, Claudia Diamantini, Emanuele Frontoni, Ennio Gambi, Lorenzo Palma, Luca Pernini, Paola Pierleoni, Domenico Potena, Laura Raffaeli, Susanna Spinsante, Primo Zingaretti, Diletta Cacciagrano, Flavio Corradini, Rosario Culmone, Francesco De Angelis, Emanuela Merelli, Barbara Re
Interoperability issues among smart home technological frameworks. MESA (2014)
Emanuela Merelli, Mario Rasetti
Non locality, Topology, Formal languages: New Global Tools to Handle Large Data Sets. ICCS (2013)
Pierluigi Penna, Nicola Paoletti, Giuseppe Scarcella, Luca Tesei, Mauro Marini, Emanuela Merelli
DISPAS: An Agent-Based Tool for the Management of Fishing Effort. SEFM Workshops (2013)
Emanuela Merelli, Angelo Troina
Preface. Electron. Notes Theor. Comput. Sci. 299 (2013)
Federico Buti, Massimo Callisto De Donato, Flavio Corradini, Maria Rita Di Berardini, Emanuela Merelli, Luca Tesei
Towards Abstraction-Based Verification of Shape Calculus. Electron. Notes Theor. Comput. Sci. 284 (2012)
Pietro Liò, Nicola Paoletti, Mohammad Ali Moni, Kathryn Atwell, Emanuela Merelli, Marco Viceconti
Modelling osteomyelitis. BMC Bioinform. 13 (S-14) (2012)
Pietro Liò, Emanuela Merelli, Nicola Paoletti
Disease processes as hybrid dynamical systems HSB (2012)
Emanuela Merelli, Mario Rasetti
The Immune System as a Metaphor for Topology Driven Patterns Formation in Complex Systems. ICARIS (2012)
Ezio Bartocci, Diletta Cacciagrano, Maria Rita Di Berardini, Emanuela Merelli, Leonardo Vito
UBioLab: a web-LABoratory for Ubiquitous in-silico experiments. J. Integr. Bioinform. 9 (1) (2012)
Emanuela Merelli, Nicola Paoletti, Luca Tesei
A multi-level model for self-adaptive systems FOCLASA (2012)
Ezio Bartocci, Pietro Liò, Emanuela Merelli, Nicola Paoletti
Multiple Verification in Complex Biological Systems: The Bone Remodelling Case Study. Trans. Comp. Sys. Biology 14 (2012)
Federico Buti, Flavio Corradini, Emanuela Merelli, Luca Tesei
A Geometrical Refinement of Shape Calculus Enabling Direct Simulation. SIMULTECH (2012)
Nicola Paoletti, Pietro Liò, Emanuela Merelli, Marco Viceconti
Multilevel Computational Modeling and Quantitative Analysis of Bone Remodeling. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (5) (2012)
Federico Buti, Diletta Cacciagrano, Massimo Callisto De Donato, Flavio Corradini, Emanuela Merelli, Luca Tesei
BIOSHAPE\textsc{BioShape}: End-User Development for Simulating Biological Systems. IS-EUD (2011)
Federico Buti, Diletta Cacciagrano, Flavio Corradini, Emanuela Merelli, Luca Tesei
A Uniform Multiscale Meta-model of BioShape. Electron. Notes Theor. Comput. Sci. 277 (2011)
Flavio Corradini, Emanuela Merelli, Diletta Romana Cacciagrano, Rosario Culmone, Luca Tesei, Leonardo Vito
ACTIVAge: proACTIVe and Self-Adaptive Social Sensor Network for Ageing People. ERCIM News 2011 (87) (2011)
Federico Buti, Massimo Callisto De Donato, Flavio Corradini, Emanuela Merelli, Luca Tesei
Multiscale Modelling: A Mobile Membrane Approach CoRR (2011)
Nicola Paoletti, Pietro Liò, Emanuela Merelli, Marco Viceconti
Osteoporosis: a multiscale modeling viewpoint. CMSB (2011)
Pietro Liò, Emanuela Merelli, Nicola Paoletti, Marco Viceconti
A Combined Process Algebraic and Stochastic Approach to Bone Remodeling. Electron. Notes Theor. Comput. Sci. 277 (2011)
Emanuela Merelli, Nicola Paoletti, Pietro Liò
Methodological Bridges for Multi-Level Systems. FET (2011)
Roberta Alfieri, Ezio Bartocci, Emanuela Merelli, Luciano Milanesi
Modeling the cell cycle: From deterministic models to hybrid systems. Biosyst. 105 (1) (2011)
Pietro Liò, Emanuela Merelli, Nicola Paoletti
Multiple verification in computational modeling of bone pathologies CompMod (2011)
Federico Buti, Flavio Corradini, Emanuela Merelli, Elio Paschini, Pierluigi Penna, Luca Tesei
An Individual-based Probabilistic Model for Fish Stock Simulation AMCA-POP (2010)
Federico Buti, Diletta Cacciagrano, Flavio Corradini, Emanuela Merelli, Luca Tesei, M. Pani
Bone Remodelling in BioShape. Electron. Notes Theor. Comput. Sci. 268 (2010)
Ezio Bartocci, Diletta Romana Cacciagrano, Maria Rita Di Berardini, Emanuela Merelli, Luca Tesei
Timed Operational Semantics and Well-Formedness of Shape Calculus. Sci. Ann. Comput. Sci. 20 (2010)
Federico Buti, Diletta Cacciagrano, Flavio Corradini, Emanuela Merelli, Luca Tesei
BioShape: a spatial shape-based scale-independent simulation environment for biological systems. ICCS (1) (2010)
Ezio Bartocci, Diletta Romana Cacciagrano, Maria Rita Di Berardini, Emanuela Merelli, Luca Tesei
Shape Calculus: Timed Operational Semantics and Well-formedness CoRR (2010)
Diletta Cacciagrano, Flavio Corradini, Emanuela Merelli, Luca Tesei
Multiscale Bone Remodelling with Spatial P Systems MeCBIC (2010)
Ezio Bartocci, Flavio Corradini, Emanuela Merelli, Luca Tesei
Detecting synchronisation of biological oscillators by model checking. Theor. Comput. Sci. 411 (20) (2010)
Nicola Cannata, Emanuela Merelli, Irek Ulidowski
Preface: Hybrid automata and oscillatory behaviour in biological systems. Theor. Comput. Sci. 411 (20) (2010)
Ezio Bartocci, Flavio Corradini, Maria Rita Di Berardini, Emanuela Merelli, Luca Tesei
Shape Calculus. A Spatial Mobile Calculus for 3D Shapes. Sci. Ann. Comput. Sci. 20 (2010)
Diletta Cacciagrano, Flavio Corradini, Emanuela Merelli
Bone Remodelling: A Complex Automata-Based Model Running in BioShape. ACRI (2010)
Ezio Bartocci, Flavio Corradini, Emanuela Merelli, Luca Tesei
Model Checking Biological Oscillators. Electron. Notes Theor. Comput. Sci. 229 (1) (2009)
Nicola Cannata, Emanuela Merelli, Irek Ulidowski
Preface. Electron. Notes Theor. Comput. Sci. 229 (1) (2009)
Ezio Bartocci, Flavio Corradini, Maria Rita Di Berardini, Emanuela Merelli, Luca Tesei
A Shape Calculus for Biological Processes. ICTCS (2009)
Flavio Corradini, Emanuela Merelli, Alberto Polzonetti, Barbara Re, Leonardo Vito
Resourceome for e-Government: Semantic Web Tool for Managing PA Resources. CSREA EE (2009)
Nicola Cannata, Emanuela Merelli
Preface. Theor. Comput. Sci. 410 (33-34) (2009)
Nicola Cannata, Flavio Corradini, Emanuela Merelli
Multiagent modelling and simulation of carbohydrate oxidation in cell. Int. J. Model. Identif. Control. 3 (1) (2008)
Ezio Bartocci, Flavio Corradini, Radu Grosu, Emanuela Merelli, Oliviero Riganelli, Scott A. Smolka
StonyCam: A Formal Framework for Modeling, Analyzing and Regulating Cardiac Myocytes. Concurrency, Graphs and Models (2008)
Nicola Cannata, Emanuela Merelli
Preface. Electron. Notes Theor. Comput. Sci. 194 (3) (2008)
Paolo Romano, Ezio Bartocci, Guglielmo Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Luciano Milanesi
Biowep: a workflow enactment portal for bioinformatics applications. BMC Bioinform. 8 (S-1) (2007)
Ezio Bartocci, Flavio Corradini, Emanuela Merelli, Lorenzo Scortichini
BioWMS: a web-based Workflow Management System for bioinformatics. BMC Bioinform. 8 (S-1) (2007)
Emanuela Merelli, Giuliano Armano, Nicola Cannata, Flavio Corradini, Mark d'Inverno, Andreas Doms, Phillip W. Lord, Andrew C. R. Martin, Luciano Milanesi, Steffen Möller, Michael Schroeder, Michael Luck
Agents in bioinformatics, computational and systems biology. Briefings Bioinform. 8 (1) (2007)
Nicola Cannata, Flavio Corradini, Francesca Piersigilli, Emanuela Merelli, Leonardo Vito
Semantic Resource Management in MAS. WOA (2007)
Emanuela Merelli, Michal Young
Validating MAS simulation models with mutation. Multiagent Grid Syst. 3 (2) (2007)
Nicola Cannata, Flavio Corradini, Emanuela Merelli
A Resourceomic Grid for bioinformatics. Future Gener. Comput. Syst. 23 (3) (2007)
Paolo Romano, Guglielmo Bertolini, Flavio De Paoli, M. Fattore, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Ivan Porro, Silvia Scaglione, Luciano Milanesi
Network integration of data and analysis of oncology interest. J. Integr. Bioinform. 3 (1) (2006)
Ezio Bartocci, Flavio Corradini, Emanuela Merelli
Enacting Proactive Workflows Engine in e-Science. International Conference on Computational Science (3) (2006)
Ezio Bartocci, Flavio Corradini, Emanuela Merelli
Building a MultiAgent System from a User Workflow Specification. WOA (2006)
Nicola Cannata, Emanuela Merelli, Russ B. Altman
Correction: Time to Organize the Bioinformatics Resourceome. PLoS Comput. Biol. 2 (2) (2006)
Ezio Bartocci, Flavio Corradini, Emanuela Merelli, Leonardo Vito
Model driven design and implementation of activity-based applications in Hermes. WOA (2006)
Michael Luck, Emanuela Merelli
Agents in bioinformatics. Knowl. Eng. Rev. 20 (2) (2005)
Nicola Cannata, Emanuela Merelli, Russ B. Altman
Time to Organize the Bioinformatics Resourceome. PLoS Comput. Biol. 1 (7) (2005)
Flavio Corradini, Emanuela Merelli, Marco Vita
A Multi-agent System for Modelling Carbohydrate Oxidation in Cell. ICCSA (2) (2005)
Flavio Corradini, Emanuela Merelli
Hermes: Agent-Based Middleware for Mobile Computing. SFM (2005)
Flavio Corradini, Rosario Culmone, Maria Rita Di Berardini, Emanuela Merelli
Integrating Ontologies in Mobile Agents. WOA (2005)

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Publication Activity (10 Years)

Top Topics

Top Venues

Emanuela Merelli