Michael Schroeder

ORCID

Publication Activity (10 Years)

Years Active: 1995-2023
Publications (10 Years): 14

Top Venues

Publications

Ali Al-Fatlawi, Eka Rusadze, Alexander Shmelkin, Negin Malekian, Cigdem Ozen, Christian Pilarsky, Michael Schroeder
Netrank: network-based approach for biomarker discovery. BMC Bioinform. 24 (1) (2023)
Özge Kart, Alexandre Mestiashvili, Kurt Lachmann, Richard Kwasnicki, Michael Schroeder
Emati: a recommender system for biomedical literature based on supervised learning. Database J. Biol. Databases Curation 2022 (2022) (2022)
Ali Al-Fatlawi, Nazia Afrin, Cigdem Ozen, Negin Malekian, Michael Schroeder
NetRank Recovers Known Cancer Hallmark Genes as Universal Biomarker Signature for Cancer Outcome Prediction. Frontiers Bioinform. 2 (2022)
Aldo Acevedo, Claudio Durán, Ming-Ju Kuo, Sara Ciucci, Michael Schroeder, Carlo Vittorio Cannistraci
Measuring Group Separability in Geometrical Space for Evaluation of Pattern Recognition and Dimension Reduction Algorithms. IEEE Access 10 (2022)
Melissa F. Adasme, Sarah Naomi Bolz, Ali Al-Fatlawi, Michael Schroeder
Decomposing compounds enables reconstruction of interaction fingerprints for structure-based drug screening. J. Cheminformatics 14 (1) (2022)
Sarah Naomi Bolz, Melissa F. Adasme, Michael Schroeder
Toward an Understanding of Pan-Assay Interference Compounds and Promiscuity: A Structural Perspective on Binding Modes. J. Chem. Inf. Model. 61 (5) (2021)
François Bonnardel, Julien Mariethoz, Sebastian Salentin, Xavier Robin, Michael Schroeder, Serge Pérez, Frédérique Lisacek, Anne Imberty
UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. Nucleic Acids Res. 47 (Database-Issue) (2019)
Claudio Durán, Simone Daminelli, Josephine Maria Thomas, V. Joachim Haupt, Michael Schroeder, Carlo Vittorio Cannistraci
Pioneering topological methods for network-based drug-target prediction by exploiting a brain-network self-organization theory. Briefings Bioinform. 19 (6) (2018)
Florian Kaiser, Sebastian Bittrich, Sebastian Salentin, Christoph Leberecht, V. Joachim Haupt, Sarah Krautwurst, Michael Schroeder, Dirk Labudde
Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases. PLoS Comput. Biol. 14 (4) (2018)
Christoph Baldow, Sebastian Salentin, Michael Schroeder, Ingo Roeder, Ingmar Glauche
MAGPIE: Simplifying access and execution of computational models in the life sciences. PLoS Comput. Biol. 13 (12) (2017)
George Tsatsaronis, Georgios Balikas, Prodromos Malakasiotis, Ioannis Partalas, Matthias Zschunke, Michael R. Alvers, Dirk Weissenborn, Anastasia Krithara, Sergios Petridis, Dimitris Polychronopoulos, Yannis Almirantis, John Pavlopoulos, Nicolas Baskiotis, Patrick Gallinari, Thierry Artières, Axel-Cyrille Ngonga Ngomo, Norman Heino, Éric Gaussier, Liliana Barrio-Alvers, Michael Schroeder, Ion Androutsopoulos, Georgios Paliouras
An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition. BMC Bioinform. 16 (2015)
Alina Petrova, Yue Ma, George Tsatsaronis, Maria Kissa, Felix Distel, Franz Baader, Michael Schroeder
Formalizing biomedical concepts from textual definitions. J. Biomed. Semant. 6 (2015)
Sebastian Salentin, Sven Schreiber, V. Joachim Haupt, Melissa F. Adasme, Michael Schroeder
PLIP: fully automated protein-ligand interaction profiler. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Dirk Weissenborn, Michael Schroeder, George Tsatsaronis
Discovering relations between indirectly connected biomedical concepts. J. Biomed. Semant. 6 (2015)
Dirk Weissenborn, Michael Schroeder, George Tsatsaronis
Discovering Relations between Indirectly Connected Biomedical Concepts. DILS (2014)
Daniel Eisinger, Jan Mönnich, Michael Schroeder
Developing Semantic Search for the Patent Domain. IPaMin@KONVENS (2014)
Janine Roy, Christof Winter, Zerrin Isik, Michael Schroeder
Network information improves cancer outcome prediction. Briefings Bioinform. 15 (4) (2014)
Daniel Eisinger, George Tsatsaronis, Markus Bundschus, Ulrich Wieneke, Michael Schroeder
Automated Patent Categorization and Guided Patent Search using IPC as Inspired by MeSH and PubMed. J. Biomed. Semant. 4 (S-1) (2013)
Dirk Weissenborn, George Tsatsaronis, Michael Schroeder
Answering Factoid Questions in the Biomedical Domain. BioASQ@CLEF (2013)
George Tsatsaronis, Alina Petrova, Maria Kissa, Yue Ma, Felix Distel, Franz Baader, Michael Schroeder
Learning Formal Definitions for Biomedical Concepts. OWLED (2013)
Götz Fabian, Thomas Wächter, Michael Schroeder
Extending ontologies by finding siblings using set expansion techniques. Bioinform. 28 (12) (2012)
Anastasios Tagaris, Efthymios Chondrogiannis, Vassiliki Andronikou, George Tsatsaronis, Konstantinos Mourtzoukos, Joseph Roumier, Nikolaos Matskanis, Michael Schroeder, Philippe Massonet, Dimitrios D. Koutsouris, Theodora A. Varvarigou
Semantic Interoperability Between Clinical Research and Healthcare: The PONTE Approach. ESWC (Satellite Events) (2012)
George Tsatsaronis, Natalia Macari, Sunna Torge, Heiko Dietze, Michael Schroeder
A Maximum-Entropy approach for accurate document annotation in the biomedical domain. J. Biomed. Semant. 3 (S-1) (2012)
Christof Winter, Glen Kristiansen, Stephan Kersting, Janine Roy, Daniela Aust, Thomas Knösel, Petra Rümmele, Beatrix Jahnke, Vera Hentrich, Felix Rückert, Marco Niedergethmann, Wilko Weichert, Marcus Bahra, Hans J. Schlitt, Utz Settmacher, Helmut Friess, Markus W. Büchler, Hans-Detlev Saeger, Michael Schroeder, Christian Pilarsky, Robert Grützmann
Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes. PLoS Comput. Biol. 8 (5) (2012)
George Tsatsaronis, Michael Schroeder, Georgios Paliouras, Yannis Almirantis, Ion Androutsopoulos, Éric Gaussier, Patrick Gallinari, Thierry Artières, Michael R. Alvers, Matthias Zschunke, Axel-Cyrille Ngonga Ngomo
BioASQ: A Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text (2012)
Jing-Na Si, Zengming Zhang, Biaoyang Lin, Michael Schroeder, Bingding Huang
MetaDBSite: a meta approach to improve protein DNA-binding sites prediction. BMC Syst. Biol. 5 (S-1) (2011)
V. Joachim Haupt, Michael Schroeder
Old friends in new guise: repositioning of known drugs with structural bioinformatics. Briefings Bioinform. 12 (4) (2011)
Thomas Wächter, Götz Fabian, Michael Schroeder
DOG4DAG: semi-automated ontology generation in OBO-Edit and Protégé. SWAT4LS (2011)
Zengming Zhang, Yu Li, Biaoyang Lin, Michael Schroeder, Bingding Huang
Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction. Bioinform. 27 (15) (2011)
Jörg Hakenberg, Martin Gerner, Maximilian Haeussler, Illés Solt, Conrad Plake, Michael Schroeder, Graciela Gonzalez, Goran Nenadic, Casey M. Bergman
The GNAT library for local and remote gene mention normalization. Bioinform. 27 (19) (2011)
George Tsatsaronis, Iraklis Varlamis, Sunna Torge, Matthias Reimann, Kjetil Nørvåg, Michael Schroeder, Matthias Zschunke
How to Become a Group Leader? or Modeling Author Types Based on Graph Mining. TPDL (2011)
Michael Schroeder
Semantic search for the life sciences. ISI (2011)
Annalisa Marsico, Andreas Henschel, Christof Winter, Anne Tuukkanen, Boris Vassilev, Kerstin Scheubert, Michael Schroeder
-helical transmembrane proteins. BMC Bioinform. 11 (2010)
Annalisa Marsico, Kerstin Scheubert, Anne Tuukkanen, Andreas Henschel, Christof Winter, Rainer Winnenburg, Michael Schroeder
MeMotif: a database of linear motifs in α-helical transmembrane proteins. Nucleic Acids Res. 38 (Database-Issue) (2010)
Thomas Wächter, Michael Schroeder
Semi-automated ontology generation within OBO-Edit. Bioinform. 26 (12) (2010)
Saskia Preissner, Katharina Kroll, Mathias Dunkel, Christian Senger, Gady Goldsobel, Daniel Kuzman, Stefan Günther, Rainer Winnenburg, Michael Schroeder, Robert Preissner
SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions. Nucleic Acids Res. 38 (Database-Issue) (2010)
Bill Andreopoulos, Christof Winter, Dirk Labudde, Michael Schroeder
Triangle network motifs predict complexes by complementing high-error interactomes with structural information. BMC Bioinform. 10 (2009)
Conrad Plake, Loïc Royer, Rainer Winnenburg, Jörg Hakenberg, Michael Schroeder
GoGene: gene annotation in the fast lane. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Loïc Royer, Conrad Plake, Michael Schroeder
Identifying Hot Cancer and Novel Novel Cell-cycle Genes from Literature. GCB (2009)
Ed de Quincey, Helen Oliver, Patty Kostkova, Gawesh Jawaheer, Gemma Madle, Gayo Diallo, Dimitra Alexopoulou, Michael Schroeder, Bianca Habermann, Khaled Khelif, Simon Jupp, Robert Stevens
Mining for Patterns of Semantic Link Usage: Do Domain Users Actually Like Semantic Browsing? Web Intelligence/IAT Workshops (2009)
Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder
A roadmap of clustering algorithms: finding a match for a biomedical application. Briefings Bioinform. 10 (3) (2009)
Dimitra Alexopoulou, Bill Andreopoulos, Heiko Dietze, Andreas Doms, Fabien Gandon, Jörg Hakenberg, Khaled Khelif, Michael Schroeder, Thomas Wächter
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy. BMC Bioinform. 10 (2009)
Heiko Dietze, Michael Schroeder
GoWeb: a semantic search engine for the life science web. BMC Bioinform. 10 (S-10) (2009)
Helen Oliver, Gayo Diallo, Ed de Quincey, Dimitra Alexopoulou, Bianca Habermann, Patty Kostkova, Michael Schroeder, Simon Jupp, Khaled Khelif, Robert Stevens, Gawesh Jawaheer, Gemma Madle
A user-centred evaluation framework for the Sealife semantic web browsers. BMC Bioinform. 10 (S-10) (2009)
Rainer Winnenburg, Conrad Plake, Michael Schroeder
Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. BMC Bioinform. 10 (S-8) (2009)
Rainer Winnenburg, Thomas Wächter, Conrad Plake, Andreas Doms, Michael Schroeder
Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? Briefings Bioinform. 9 (6) (2008)
Rainer Winnenburg, Conrad Plake, Michael Schroeder
Mutation tagging with gene identifiers applied to membrane protein stability prediction. AIMM (2008)
Dimitra Alexopoulou, Thomas Wächter, Laura Pickersgill, Cecilia Eyre, Michael Schroeder
Ontology learning with text mining: Two use cases in lipoprotein metabolism and toxicology. Ontologies and Text Mining for Life Sciences (2008)
Heiko Dietze, Michael Schroeder
GoWeb: A Semantic Search Engine for the Life Science Web. SWAT4LS (2008)
Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
Unraveling Protein Networks with Power Graph Analysis. PLoS Comput. Biol. 4 (7) (2008)
Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez
Inter-species normalization of gene mentions with GNAT. ECCB (2008)
Heiko Dietze, Dimitra Alexopoulou, Michael R. Alvers, Bill Barrio-Alvers, Andreas Doms, Jörg Hakenberg, Jan Mönnich, Conrad Plake, Andreas Reischuck, Loïc Royer, Thomas Wächter, Matthias Zschunke, Michael Schroeder
GoPubMed: Exploring Pubmed with Ontological Background Knowledge. Ontologies and Text Mining for Life Sciences (2008)
Dimitra Alexopoulou, Thomas Wächter, Laura Pickersgill, Cecilia Eyre, Michael Schroeder
Terminologies for text-mining; an experiment in the lipoprotein metabolism domain. BMC Bioinform. 9 (S-4) (2008)
Bill Andreopoulos, Dimitra Alexopoulou, Michael Schroeder
Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering. Int. J. Data Min. Bioinform. 2 (3) (2008)
Nicola Cannata, Michael Schroeder, Roberto Marangoni, Paolo Romano
A Semantic Web for bioinformatics: goals, tools, systems, applications. BMC Bioinform. 9 (S-4) (2008)
Dirk Labudde, Annalisa Marsico, K. Tanuj Sapra, Michael Schroeder
Pattern Recognition of Single-Molecule Force Spectroscopy Data. ER Workshops (2007)
Emanuela Merelli, Giuliano Armano, Nicola Cannata, Flavio Corradini, Mark d'Inverno, Andreas Doms, Phillip W. Lord, Andrew C. R. Martin, Luciano Milanesi, Steffen Möller, Michael Schroeder, Michael Luck
Agents in bioinformatics, computational and systems biology. Briefings Bioinform. 8 (1) (2007)
Bill Andreopoulos, Aijun An, Xiaogang Wang, Michalis Faloutsos, Michael Schroeder
Clustering by common friends finds locally significant proteins mediating modules. Bioinform. 23 (9) (2007)
Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
Visualising protein interaction networks with power graphs. BMC Syst. Biol. 1 (S-1) (2007)
Andreas Henschel, Christof Winter, Wan Kyu Kim, Michael Schroeder
Using structural motif descriptors for sequence-based binding site prediction. BMC Bioinform. 8 (S-4) (2007)
Annalisa Marsico, Dirk Labudde, K. Tanuj Sapra, Daniel J. Muller, Michael Schroeder
A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy. Bioinform. 23 (2) (2007)
Frank Dressel, Annalisa Marsico, Anne Tuukkanen, Michael Schroeder, Dirk Labudde
Understanding of SMFS Barriers by Means of Energy Profiles. German Conference on Bioinformatics (2007)
Gihan Dawelbait, Christof Winter, Yanju Zhang, Christian Pilarsky, Robert Grützmann, Jörg-Christian Heinrich, Michael Schroeder
Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Mark A. Musen, Michael Schroeder, Barry Smith
07132 Report - Towards Interoperability of Biomedical Ontologies. Towards Interoperability of Biomedical Ontologies (2007)
Tobias Kuhn, Loïc Royer, Norbert E. Fuchs, Michael Schroeder
Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions. DILS (2006)
Craig A. Stewart, Michael Schroeder, Concettina Guerra, Akihiko Konagaya
Topic 17: High-Performance Bioinformatics. Euro-Par (2006)
Alexander Kozlenkov, Rafael Peñaloza, Vivek Nigam, Loïc Royer, Gihan Dawelbait, Michael Schroeder
Prova: Rule-Based Java Scripting for Distributed Web Applications: A Case Study in Bioinformatics. EDBT Workshops (2006)
Wan Kyu Kim, Andreas Henschel, Christof Winter, Michael Schroeder
The Many Faces of Protein-Protein Interactions: A Compendium of Interface Geometry. PLoS Comput. Biol. 2 (9) (2006)
Andreas Henschel, Wan Kyu Kim, Michael Schroeder
Equivalent binding sites reveal convergently evolved interaction motifs. Bioinform. 22 (5) (2006)
Andreas Doms, Vaida Jakoniene, Patrick Lambrix, Michael Schroeder, Thomas Wächter
Ontologies and Text Mining as a Basis for a Semantic Web for the Life Sciences. Reasoning Web (2006)
Thomas Wächter, André Wobst, Michael Schroeder, He Tan, Patrick Lambrix
A corpus-driven approach for design, evolution and alignment of ontologies. WSC (2006)
Michael Schroeder, Eric Neumann
Editorial - Semantic Web for Life Sciences. J. Web Semant. 4 (3) (2006)
Michael Schroeder, Albert Burger, Patty Kostkova, Robert Stevens, Bianca Habermann, Rose Dieng-Kuntz
Sealife: A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases. HealthGrid (2006)
Samatha Kottha, Michael Schroeder
Classifying Permanent and Transient Protein Interactions. German Conference on Bioinformatics (2006)
Christof Winter, Andreas Henschel, Wan Kyu Kim, Michael Schroeder
SCOPPI: a structural classification of protein-protein interfaces. Nucleic Acids Res. 34 (Database-Issue) (2006)
Joan Teyra, Andreas Doms, Michael Schroeder, M. Teresa Pisabarro
SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. BMC Bioinform. 7 (2006)
Christof Winter, Thorsten Baust, Bernard Hoflack, Michael Schroeder
A Novel, Comprehensive Method to Detect and Predict Proteinprotein Interactions Applied to the Study of Vesicular Trafficking. German Conference on Bioinformatics (2006)
Annalisa Marsico, K. Tanuj Sapra, Daniel J. Muller, Michael Schroeder, Dirk Labudde
A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants. CompLife (2006)
Andreas Doms, Michael Schroeder
GoPubMed: exploring PubMed with the Gene Ontology. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Bingding Huang, Michael Schroeder
Using residue propensities and tightness of fit to improve rigid-body protein-docking. German Conference on Bioinformatics (2005)
Gihan Dawelbait, Christian Pilarsky, Yanju Zhang, Robert Grützmann, Michael Schroeder
Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data. CompLife (2005)
Daeui Park, Semin Lee, Dan M. Bolser, Michael Schroeder, Michael Lappe, Donghoon Oh, Jong Bhak
Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). Bioinform. 21 (15) (2005)
Ralf Schweimeier, Michael Schroeder
A Parameterised Hierarchy of Argumentation Semantics for Extended Logic Programming and its Application to the Well-founded Semantics. Theory Pract. Log. Program. 5 (1-2) (2005)
Sungsam Gong, Giseok Yoon, Insoo Jang, Dan M. Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinform. 21 (10) (2005)
Jacek Gomoluch, Michael Schroeder
Performance evaluation of market-based resource allocation for Grid computing. Concurr. Pract. Exp. 16 (5) (2004)
Ralph Delfs, Andreas Doms, Alexander Kozlenkov, Michael Schroeder
GoPubMed: ontology-based literature search applied to Gene Ontology and PubMed. German Conference on Bioinformatics (2004)
François Bry, Wolfgang E. Nagel, Michael Schroeder
Grid-Computing. Inform. Spektrum 27 (6) (2004)
Ralf Schweimeier, Michael Schroeder
Fuzzy Unification and Argumentation for Well-Founded Semantics. SOFSEM (2004)
Panos Dafas, Dan M. Bolser, Jacek Gomoluch, Jong Park, Michael Schroeder
Using convex hulls to extract interaction interfaces from known structures. Bioinform. 20 (10) (2004)
Alexander Kozlenkov, Michael Schroeder
PROVA: Rule-Based Java-Scripting for a Bioinformatics Semantic Web. DILS (2004)
Jacek Gomoluch, Michael Schroeder
Market-based Resource Allocation for Grid Computing: A Model and Simulation. Middleware Workshops (2003)
Dan M. Bolser, Panos Dafas, Richard Harrington, Jong Park, Michael Schroeder
Visualisation and graph-theoretic analysis of a large-scale protein structural interactome. BMC Bioinform. 4 (2003)
Ralf Schweimeier, Michael Schroeder
A Parameterised Hierarchy of Argumentation Semantics for Extended Logic Programming and its Application to the Well-founded Semantics CoRR (2003)
Penny Noy, Michael Schroeder
Advancing Profile Use in Agent Societies. ESAW (2003)
Jens Dietrich, Alexander Kozlenkov, Michael Schroeder, Gerd Wagner
Rule-based agents for the semantic web. Electron. Commer. Res. Appl. 2 (4) (2003)
Tshiamo Motshegwa, Michael Schroeder
Interaction Monitoring and Termination Detection for Agent Societies: Preliminary Results. ESAW (2003)
Panos Dafas, Jacek Gomoluch, Alexander Kozlenkov, Michael Schroeder
Structural Protein Interactions: From Months to Minutes. PARCO (2003)
Panos Dafas, Dan M. Bolser, Jacek Gomoluch, Jong Park, Michael Schroeder
Fast and efficient computation of domain-domaininteractions from known protein structures in the PDB. German Conference on Bioinformatics (2003)
Michael Schroeder, Ralf Schweimeier
Fuzzy argumentation for negotiating agents. AAMAS (2002)
Ralf Schweimeier, Michael Schroeder
Well-Founded Argumentation Semantics for Extended Logic Programming CoRR (2002)

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Publication Activity (10 Years)

Top Topics

Top Venues

Michael Schroeder