Kyungsook Han

ORCID

Publication Activity (10 Years)

Years Active: 1990-2023
Publications (10 Years): 30

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

ICIC (3)

ICIC (2)

ICIC (1)

Publications

Wook Lee, Seokwoo Lee, Kyungsook Han
Constructing a Cancer Patient-Specific Network Based on Second-Order Partial Correlations of Gene Expression and DNA Methylation. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Seokwoo Lee, Wook Lee, Shulei Ren, Byungkyu Park, Kyungsook Han
Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers in Renal Cell Carcinoma. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Byungkyu Park, Wook Lee, Kyungsook Han
A New Approach to Deriving Prognostic Gene Pairs From Cancer Patient-Specific Gene Correlation Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Siguo Wang, Qinhu Zhang, Ying He, Zhen Cui, Zhen-Hao Guo, Kyungsook Han, De-Shuang Huang
DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes. PLoS Comput. Biol. 18 (10) (2022)
De-Shuang Huang, Kyungsook Han, Tatsuya Akutsu
Guest Editorial for Special Section on the 16th International Conference on Intelligent Computing (ICIC). IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Seokwoo Lee, Myounghoon Cho, Wook Lee, Byungkyu Park, Kyungsook Han
Predicting Lymph Node Metastasis and Distant Metastasis using Differential Correlations of miRNAs and Their Target RNAs in Cancer. BIBM (2022)
Zhen Shen, Qinhu Zhang, Kyungsook Han, De-Shuang Huang
A Deep Learning Model for RNA-Protein Binding Preference Prediction Based on Hierarchical LSTM and Attention Network. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (2) (2022)
Qinhu Zhang, Wenbo Yu, Kyungsook Han, Asoke K. Nandi, De-Shuang Huang
Multi-Scale Capsule Network for Predicting DNA-Protein Binding Sites. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Qinhu Zhang, Dailun Wang, Kyungsook Han, De-Shuang Huang
Predicting TF-DNA Binding Motifs from ChIP-seq Datasets Using the Bag-Based Classifier Combined With a Multi-Fold Learning Scheme. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Byungkyu Park, Wook Lee, Kyungsook Han
GeneCoNet: A web application server for constructing cancer patient-specific gene correlation networks with prognostic gene pairs. Comput. Methods Programs Biomed. 212 (2021)
Seokwoo Lee, Wook Lee, Shulei Ren, Kyungsook Han
A Method for Constructing an Integrative Network of Competing Endogenous RNAs. ICIC (3) (2021)
Wook Lee, Kyungsook Han
Constructive Prediction of Potential RNA Aptamers for a Protein Target. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (5) (2020)
Byungkyu Park, Kyungsook Han
Discovering protein-binding RNA motifs with a generative model of RNA sequences. Comput. Biol. Chem. 84 (2020)
Lin Yuan, Le-Hang Guo, Chang-an Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
Integration of Multi-Omics Data for Gene Regulatory Network Inference and Application to Breast Cancer. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (3) (2019)
Wenzheng Bao, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
Mutli-Features Prediction of Protein Translational Modification Sites. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Wook Lee, Byungkyu Park, Kyungsook Han
Sequence-Based Prediction of Putative Transcription Factor Binding Sites in DNA Sequences of Any Length. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Wook Lee, Jisu Lee, Kyungsook Han
Finding Potential RNA Aptamers for a Protein Target Using Sequence and Structure Features. ICIC (1) (2018)
Jinho Im, Byungkyu Park, Kyungsook Han
Finding Protein-Binding Nucleic Acid Sequences Using a Long Short-Term Memory Neural Network. ICIC (2) (2018)
Byungkyu Park, Jinho Im, Kyungsook Han
Constructing Gene Co-expression Networks for Prognosis of Lung Adenocarcinoma. ICIC (2) (2018)
Zhen Shen, You-Hua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
miRNA-Disease Association Prediction with Collaborative Matrix Factorization. Complex. 2017 (2017)
Daesik Choi, Byungkyu Park, Hanju Chae, Wook Lee, Kyungsook Han
Predicting protein-binding regions in RNA using nucleotide profiles and compositions. BMC Syst. Biol. 11 (S-2) (2017)
Byungmin Kim, Saud Alguwaizani, Xiang Zhou, De-Shuang Huang, Byunkyu Park, Kyungsook Han
An improved method for predicting interactions between virus and human proteins. J. Bioinform. Comput. Biol. 15 (1) (2017)
Wei-Li Guo, Kyungsook Han, De-Shuang Huang
Prediction of Target Genes Based on Multiway Integration of High-Throughput Data. ICIC (1) (2016)
Narankhuu Tuvshinjargal, Wook Lee, Byungkyu Park, Kyungsook Han
PRIdictor: Protein-RNA Interaction predictor. Biosyst. 139 (2016)
Kyungsook Han, Jeonghoon Lee
GeneNetFinder2: Improved Inference of Dynamic Gene Regulatory Relations with Multiple Regulators. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (1) (2016)
Wei-Li Guo, Kyungsook Han, De-Shuang Huang
Analysis of MicroRNA and Transcription Factor Regulation. ICIC (1) (2016)
Lin Yuan, Kyungsook Han, De-Shuang Huang
Novel Algorithm for Multiple Quantitative Trait Loci Mapping by Using Bayesian Variable Selection Regression. ICIC (3) (2016)
Wenzheng Bao, Zhichao Jiang, Kyungsook Han, De-Shuang Huang
Prediction of Lysine Acetylation Sites Based on Neural Network. ICIC (2) (2016)
Wook Lee, Byungkyu Park, Daesik Choi, Chungkeun Lee, Hanju Chae, Kyungsook Han
Predicting Transcription Factor Binding Sites in DNA Sequences Without Prior Knowledge. ICIC (1) (2016)
Yanga Byun, Kyungsook Han
An efficient algorithm for planar drawing of RNA structures with pseudoknots of any type. J. Bioinform. Comput. Biol. 14 (3) (2016)
Narankhuu Tuvshinjargal, Wook Lee, Byungkyu Park, Kyungsook Han
Predicting protein-binding RNA nucleotides with consideration of binding partners. Comput. Methods Programs Biomed. 120 (1) (2015)
Wook Lee, Byungkyu Park, Kyungsook Han
SVM-Based Classification of Diffusion Tensor Imaging Data for Diagnosing Alzheimer's Disease and Mild Cognitive Impairment. ICIC (2) (2015)
Guangyu Cui, Byungmin Kim, Saud Alguwaizani, Kyungsook Han
Assessing protein-protein interactions based on the semantic similarity of interacting proteins. Int. J. Data Min. Bioinform. 13 (1) (2015)
Byungkyu Brian Park, Hyungchan Kim, Kyungsook Han
DBBP: database of binding pairs in protein-nucleic acid interactions. BMC Bioinform. 15 (S-15) (2014)
Jeonghoon Lee, Yu Chen, Kyungsook Han
Inference of Dynamic Gene Regulatory Relations with Multiple Regulators. ICIC (3) (2014)
Byungkyu Brian Park, Jinyong Im, Narankhuu Tuvshinjargal, Wook Lee, Kyungsook Han
Sequence-based prediction of protein-binding sites in DNA: Comparative study of two SVM models. Comput. Methods Programs Biomed. 117 (2) (2014)
Sungwook Choi, Kyungsook Han
Predicting protein-binding RNA nucleotides using the feature-based removal of data redundancy and the interaction propensity of nucleotide triplets. Comput. Biol. Medicine 43 (11) (2013)
Wook Lee, Byungkyu Park, Kyungsook Han
Classification of diffusion tensor images for the early detection of Alzheimer's disease. Comput. Biol. Medicine 43 (10) (2013)
Byungkyu Park, Hyungchan Kim, Sangmin Lee, Kyungsook Han
Database of Protein-Nucleic Acid Binding Pairs at Atomic and Residue Levels. ICIC (3) (2013)
Sanghoon Moon, Kwang Su Jung, Young Jin Kim, Mi Yeong Hwang, Kyungsook Han, Jong-Young Lee, Kiejung Park, Bong-Jo Kim
KGVDB: a population-based genomic map of CNVs tagged by SNPs in Koreans. Bioinform. 29 (11) (2013)
Guangyu Cui, Kyungsook Han
Scoring Protein-Protein Interactions Using the Width of Gene Ontology Terms and the Information Content of Common Ancestors. ICIC (3) (2013)
Byungkyu Park, Wook Lee, Kyungsook Han
Modeling the interactions of Alzheimer-related genes from the whole brain microarray data and diffusion tensor images of human brain. BMC Bioinform. 13 (S-7) (2012)
Guangyu Cui, Chao Fang, Kyungsook Han
Prediction of protein-protein interactions between viruses and human by an SVM model. BMC Bioinform. 13 (S-7) (2012)
Guangyu Cui, Chao Fang, Kyungsook Han
Prediction of Human Proteins Interacting with Human Papillomavirus Proteins. ICIC (3) (2011)
Sungwook Choi, Kyungsook Han
Prediction of RNA-binding amino acids from protein and RNA sequences. BMC Bioinform. 12 (S-13) (2011)
Md. Kamrul Hasan, Wook Lee, Byungkyu Park, Kyungsook Han
Connectivity Analysis of Hippocampus in Alzheimer's Brain Using Probabilistic Tractography. ICIC (3) (2011)
Byungkyu Park, Kyungsook Han
An ontology-based search engine for protein-protein interactions. BMC Bioinform. 11 (S-1) (2010)
Zhuhong You, Zheng Yin, Kyungsook Han, De-Shuang Huang, Xiaobo Zhou
A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network. BMC Bioinform. 11 (2010)
Bo Li, Chun-Hou Zheng, De-Shuang Huang, Lei Zhang, Kyungsook Han
Gene expression data classification using locally linear discriminant embedding. Comput. Biol. Medicine 40 (10) (2010)
Yu Chen, Kyungsook Han
Dynamic Identification and Visualization of Gene Regulatory Networks from Time-Series Gene Expression Profiles. ICIC (1) (2009)
Jisu Kim, De-Shuang Huang, Kyungsook Han
Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting. BMC Bioinform. 10 (S-1) (2009)
Yanga Byun, Kyungsook Han
PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots. Bioinform. 25 (11) (2009)
Rojan Shrestha, Jisu Kim, Kyungsook Han
Prediction of RNA-Binding Residues in Proteins Using the Interaction Propensities of Amino Acids and Nucleotides. ICIC (1) (2008)
Taihui Yoo, Jaetak Lee, Kyungsook Han
Prediction of Binding Sites in HCV Protein Complexes Using a Support Vector Machine. ICIC (1) (2008)
Chirag Nepal, Kyungsook Han
Analysis of HCV Envelope Proteins Interacting with Human Proteins. FBIT (2007)
Yanga Byun, Sanghoon Moon, Kyungsook Han
A general computational model for predicting ribosomal frameshifts in genome sequences. Comput. Biol. Medicine 37 (12) (2007)
Byungkyu Park, Kyungsook Han
Estimating the Reliability of Protein-Protein Interactions. FBIT (2007)
Kyungsook Han, Chirag Nepal
Mining Molecular Structure Data for the Patterns of Interactions Between Protein and RNA. International Conference on Computational Science (1) (2007)
Guang-Zheng Zhang, Chirag Nepal, Kyungsook Han
Predicting Binding Sites of Hepatitis C Virus Complexes Using Residue Binding Propensity and Sequence Entropy. International Conference on Computational Science (1) (2007)
Kyungsook Han, Guangyu Cui, Yu Chen
Identifying Functional Groups by Finding Cliques and Near-Cliques in Protein Interaction Networks. FBIT (2007)
Guang-Zheng Zhang, Kyungsook Han
Discovering Inter-Domain Paths between Hepatitis C Virus NS5A and Human Liver Proteins. FBIT (2007)
Guang-Zheng Zhang, Kyungsook Han
Hepatitis C virus contact map prediction based on binary encoding strategy. Comput. Biol. Chem. 31 (3) (2007)
Jisu Kim, Byungkyu Park, Kyungsook Han
Prediction of Interacting Motif Pairs Using Stochastic Boosting. FBIT (2007)
Kyungsook Han, Byungkyu Park
Comparative Analysis of the Interaction Networks of HIV-1 and Human Proteins. International Conference on Computational Science (2) (2007)
Yu Chen, Guangyu Cui, Kyungsook Han
Multi-Layered Networks for Visualizing the Interactions between Heterogeneous Proteins. FBIT (2007)
Sanghoon Moon, Yanga Byun, Kyungsook Han
FSDB: A frameshift signal database. Comput. Biol. Chem. 31 (4) (2007)
Yanga Byun, Kyungsook Han
PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Sanghoon Moon, Yanga Byun, Kyungsook Han
Prediction of Readthroughs Based on the Statistical Analysis of Nucleotides Around Stop Codons. International Conference on Computational Science (1) (2006)
Byungkyu Park, Kyungsook Han
Web Service for Predicting Interacting Proteins and Application to Human and HIV-1 Proteins. ICIC (3) (2006)
Sanghoon Moon, Yanga Byun, Kyungsook Han
K12 Genome. ICIC (3) (2006)
Yanga Byun, Sanghoon Moon, Kyungsook Han
Web Service for Finding Ribosomal Frameshifts. International Conference on Computational Science (1) (2006)
Byungkyu Park, Kyungsook Han
Online Prediction of Interacting Proteins with a User-Specified Protein. International Conference on Computational Science (3) (2005)
Yanga Byun, Sanghoon Moon, Kyungsook Han
Prediction of Ribosomal Frameshift Signals of User-Defined Models. International Conference on Computational Science (1) (2005)
Donghoon Lee, Byoung-Hyun Ju, Kyungsook Han
A Layout Algorithm for Signal Transduction Pathways as Two-Dimensional Drawings with Spline Curves. International Conference on Computational Science (1) (2005)
Jinsun Hong, Kyungsook Han
Prediction of Protein Interactions by the Domain and Sub-cellular Localization Information. International Conference on Computational Science (3) (2005)
Sungsam Gong, Giseok Yoon, Insoo Jang, Dan M. Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinform. 21 (10) (2005)
Namshik Han, Kyungsook Han
Prediction of Binding Sites in Protein-Nucleic Acid Complexes. International Conference on Computational Science (2004)
Sanghoon Moon, Yanga Byun, Kyungsook Han
Computational Identification of -1 Frameshift Signals. International Conference on Computational Science (2004)
Donghoon Lee, Byoung-Hyun Ju, Kyungsook Han
Dynamic Visualization of Signal Transduction Pathways from Database Information. AIS (2004)
Kyungsook Han, Byong-Hyon Ju, Haemoon Jung
WebInterViewer: visualizing and analyzing molecular interaction networks. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Haemoon Jung, Kyungsook Han
Prediction of Protein Functions Using Protein Interaction Data. International Conference on Computational Science (2004)
Daeho Lim, Kyungsook Han
PairAnalyzer: Extracting and Visualizing RNA Structure Elements Formed by Base Pairing. International Conference on Computational Science (2004)
Kyungsook Han, Byungkyu Park
A Database Server for Predicting Protein-Protein Interactions. International Conference on Computational Science (2004)
Yanga Byun, Kyungsook Han
DNA Secondary Structures for Probe Design. Graph Drawing (2004)
Kyungsook Han, Byungkyu Park, Hyongguen Kim, Jinsun Hong, Jong Park
HPID: The Human Protein Interaction Database. Bioinform. 20 (15) (2004)
Kyungsook Han, Yanga Byun
Three-dimensional visualization of protein interaction networks. Comput. Biol. Medicine 34 (2) (2004)
Dongkyu Lee, Kyungsook Han
A Genetic Algorithm for Inferring Pseudoknotted RNA Structures from Sequence Data. Discovery Science (2003)
Byong-Hyon Ju, Kyungsook Han
Complexity management in visualizing protein interaction networks. ISMB (Supplement of Bioinformatics) (2003)
Kyungsook Han, Yanga Byun
PSEUDOVIEWER2: visualization of RNA pseudoknots of any type. Nucleic Acids Res. 31 (13) (2003)
Kyungsook Han, Byong-Hyon Ju
A fast layout algorithm for protein interaction networks. Bioinform. 19 (15) (2003)
Dongkyu Lee, Kyungsook Han
A Genetic Algorithm for Predicting RNA Pseudoknot Structures. International Conference on Computational Science (2003)
Hyongguen Kim, Jong Park, Kyungsook Han
Predicting Protein Interactions in Human by Homologous Interactions in Yeast. PAKDD (2003)
Daeho Lim, Kyungsook Han
Mining RNA Structure Elements from the Structure Data of Protein-RNA Complexes. Discovery Science (2003)
Namshik Han, Hyunwoo Kim, Kyungsook Han
Computational Approach to Structural Analysis of Protein-RNA Complexes. International Conference on Computational Science (2003)
Yanga Byun, Kyungsook Han
Visualization of Protein-Protein Interaction Networks Using Force-Directed Layout. International Conference on Computational Science (2003)
Byong-Hyon Ju, Byungkyu Park, Jong H. Park, Kyungsook Han
Visualization and analysis of protein interactions. Bioinform. 19 (2) (2003)
Wootaek Kim, Yujin Lee, Kyungsook Han
Visualization of RNA Pseudoknot Structures. VECPAR (2002)
Kyungsook Han, Byong-Hyon Ju, Jong H. Park
InterViewer: Dynamic Visualization of Protein-Protein Interactions. Graph Drawing (2002)
Kyungsook Han, Yujin Lee, Wootaek Kim
PseudoViewer: automatic visualization of RNA pseudoknots. ISMB (2002)
Kyungsook Han, Hyoungguen Kim
A Mobile System for Extracting and Visualizing Protein-Protein Interactions. EurAsia-ICT (2002)

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Publication Activity (10 Years)

Top Topics

Top Venues

Kyungsook Han